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Items: 24

1.

An integrative transcriptome analysis indicates regulatory mRNA-miRNA networks for residual feed intake in Nelore cattle.

De Oliveira PSN, Coutinho LL, Tizioto PC, Cesar ASM, de Oliveira GB, Diniz WJDS, De Lima AO, Reecy JM, Mourão GB, Zerlotini A, Regitano LCA.

Sci Rep. 2018 Nov 20;8(1):17072. doi: 10.1038/s41598-018-35315-5.

2.

A comprehensive manually-curated compendium of bovine transcription factors.

de Souza MM, Zerlotini A, Geistlinger L, Tizioto PC, Taylor JF, Rocha MIP, Diniz WJS, Coutinho LL, Regitano LCA.

Sci Rep. 2018 Sep 13;8(1):13747. doi: 10.1038/s41598-018-32146-2.

3.

Identification of putative regulatory regions and transcription factors associated with intramuscular fat content traits.

Cesar ASM, Regitano LCA, Reecy JM, Poleti MD, Oliveira PSN, de Oliveira GB, Moreira GCM, Mudadu MA, Tizioto PC, Koltes JE, Fritz-Waters E, Kramer L, Garrick D, Beiki H, Geistlinger L, Mourão GB, Zerlotini A, Coutinho LL.

BMC Genomics. 2018 Jun 27;19(1):499. doi: 10.1186/s12864-018-4871-y.

4.

Corrigendum: Gene expression differences in Longissimus muscle of Nelore steers genetically divergent for residual feed intake.

Tizioto PC, Coutinho LL, Oliveira PS, Cesar AS, Diniz WJ, Lima AO, Rocha MI, Decker JE, Schnabel RD, Mourão GB, Tullio RR, Zerlotini A, Taylor JF, Regitano LC.

Sci Rep. 2017 Apr 5;7:44345. doi: 10.1038/srep44345. No abstract available.

5.

Single nucleotide variants and InDels identified from whole-genome re-sequencing of Guzerat, Gyr, Girolando and Holstein cattle breeds.

Stafuzza NB, Zerlotini A, Lobo FP, Yamagishi ME, Chud TC, Caetano AR, Munari DP, Garrick DJ, Machado MA, Martins MF, Carvalho MR, Cole JB, Barbosa da Silva MV.

PLoS One. 2017 Mar 21;12(3):e0173954. doi: 10.1371/journal.pone.0173954. eCollection 2017.

6.

Gene expression differences in Longissimus muscle of Nelore steers genetically divergent for residual feed intake.

Tizioto PC, Coutinho LL, Oliveira PS, Cesar AS, Diniz WJ, Lima AO, Rocha MI, Decker JE, Schnabel RD, Mourão GB, Tullio RR, Zerlotini A, Taylor JF, Regitano LC.

Sci Rep. 2016 Dec 22;6:39493. doi: 10.1038/srep39493. Erratum in: Sci Rep. 2017 Apr 05;7:44345.

7.

Whole genome sequencing of Guzerá cattle reveals genetic variants in candidate genes for production, disease resistance, and heat tolerance.

Rosse IC, Assis JG, Oliveira FS, Leite LR, Araujo F, Zerlotini A, Volpini A, Dominitini AJ, Lopes BC, Arbex WA, Machado MA, Peixoto MG, Verneque RS, Martins MF, Coimbra RS, Silva MV, Oliveira G, Carvalho MR.

Mamm Genome. 2017 Feb;28(1-2):66-80. doi: 10.1007/s00335-016-9670-7. Epub 2016 Nov 16.

PMID:
27853861
8.

Synergy of Omeprazole and Praziquantel In Vitro Treatment against Schistosoma mansoni Adult Worms.

Almeida GT, Lage RC, Anderson L, Venancio TM, Nakaya HI, Miyasato PA, Rofatto HK, Zerlotini A, Nakano E, Oliveira G, Verjovski-Almeida S.

PLoS Negl Trop Dis. 2015 Sep 24;9(9):e0004086. doi: 10.1371/journal.pntd.0004086. eCollection 2015.

9.

POTION: an end-to-end pipeline for positive Darwinian selection detection in genome-scale data through phylogenetic comparison of protein-coding genes.

Hongo JA, de Castro GM, Cintra LC, Zerlotini A, Lobo FP.

BMC Genomics. 2015 Aug 1;16:567. doi: 10.1186/s12864-015-1765-0.

10.

Significant variance in genetic diversity among populations of Schistosoma haematobium detected using microsatellite DNA loci from a genome-wide database.

Glenn TC, Lance SL, McKee AM, Webster BL, Emery AM, Zerlotini A, Oliveira G, Rollinson D, Faircloth BC.

Parasit Vectors. 2013 Oct 17;6(1):300. doi: 10.1186/1756-3305-6-300.

11.

Complete genome sequence of Streptococcus agalactiae strain SA20-06, a fish pathogen associated to meningoencephalitis outbreaks.

Pereira Ude P, Rodrigues Dos Santos A, Hassan SS, Aburjaile FF, Soares Sde C, Ramos RT, Carneiro AR, Guimarães LC, Silva de Almeida S, Diniz CA, Barbosa MS, Gomes de Sá P, Ali A, Bakhtiar SM, Dorella FA, Zerlotini A, Araújo FM, Leite LR, Oliveira G, Miyoshi A, Silva A, Azevedo V, Figueiredo HC.

Stand Genomic Sci. 2013 May 25;8(2):188-97. doi: 10.4056/sigs.3687314. eCollection 2013.

12.

SchistoDB: an updated genome resource for the three key schistosomes of humans.

Zerlotini A, Aguiar ER, Yu F, Xu H, Li Y, Young ND, Gasser RB, Protasio AV, Berriman M, Roos DS, Kissinger JC, Oliveira G.

Nucleic Acids Res. 2013 Jan;41(Database issue):D728-31. doi: 10.1093/nar/gks1087. Epub 2012 Nov 17.

13.

The Schistosoma mansoni phylome: using evolutionary genomics to gain insight into a parasite's biology.

Silva LL, Marcet-Houben M, Nahum LA, Zerlotini A, Gabaldón T, Oliveira G.

BMC Genomics. 2012 Nov 13;13:617. doi: 10.1186/1471-2164-13-617.

14.

Chromatin structural changes around satellite repeats on the female sex chromosome in Schistosoma mansoni and their possible role in sex chromosome emergence.

Lepesant JM, Cosseau C, Boissier J, Freitag M, Portela J, Climent D, Perrin C, Zerlotini A, Grunau C.

Genome Biol. 2012 Feb 29;13(2):R14. doi: 10.1186/gb-2012-13-2-r14.

15.

A systematically improved high quality genome and transcriptome of the human blood fluke Schistosoma mansoni.

Protasio AV, Tsai IJ, Babbage A, Nichol S, Hunt M, Aslett MA, De Silva N, Velarde GS, Anderson TJ, Clark RC, Davidson C, Dillon GP, Holroyd NE, LoVerde PT, Lloyd C, McQuillan J, Oliveira G, Otto TD, Parker-Manuel SJ, Quail MA, Wilson RA, Zerlotini A, Dunne DW, Berriman M.

PLoS Negl Trop Dis. 2012 Jan;6(1):e1455. doi: 10.1371/journal.pntd.0001455. Epub 2012 Jan 10.

16.

Whole-genome sequence of Schistosoma haematobium.

Young ND, Jex AR, Li B, Liu S, Yang L, Xiong Z, Li Y, Cantacessi C, Hall RS, Xu X, Chen F, Wu X, Zerlotini A, Oliveira G, Hofmann A, Zhang G, Fang X, Kang Y, Campbell BE, Loukas A, Ranganathan S, Rollinson D, Rinaldi G, Brindley PJ, Yang H, Wang J, Wang J, Gasser RB.

Nat Genet. 2012 Jan 15;44(2):221-5. doi: 10.1038/ng.1065.

PMID:
22246508
17.

Evolutionary histories of expanded peptidase families in Schistosoma mansoni.

Silva LL, Marcet-Houben M, Zerlotini A, Gabaldón T, Oliveira G, Nahum LA.

Mem Inst Oswaldo Cruz. 2011 Nov;106(7):864-77.

18.

Eukaryotic protein kinases (ePKs) of the helminth parasite Schistosoma mansoni.

Andrade LF, Nahum LA, Avelar LG, Silva LL, Zerlotini A, Ruiz JC, Oliveira G.

BMC Genomics. 2011 May 6;12:215. doi: 10.1186/1471-2164-12-215.

19.

Evidence for reductive genome evolution and lateral acquisition of virulence functions in two Corynebacterium pseudotuberculosis strains.

Ruiz JC, D'Afonseca V, Silva A, Ali A, Pinto AC, Santos AR, Rocha AA, Lopes DO, Dorella FA, Pacheco LG, Costa MP, Turk MZ, Seyffert N, Moraes PM, Soares SC, Almeida SS, Castro TL, Abreu VA, Trost E, Baumbach J, Tauch A, Schneider MP, McCulloch J, Cerdeira LT, Ramos RT, Zerlotini A, Dominitini A, Resende DM, Coser EM, Oliveira LM, Pedrosa AL, Vieira CU, Guimarães CT, Bartholomeu DC, Oliveira DM, Santos FR, Rabelo ÉM, Lobo FP, Franco GR, Costa AF, Castro IM, Dias SR, Ferro JA, Ortega JM, Paiva LV, Goulart LR, Almeida JF, Ferro MI, Carneiro NP, Falcão PR, Grynberg P, Teixeira SM, Brommonschenkel S, Oliveira SC, Meyer R, Moore RJ, Miyoshi A, Oliveira GC, Azevedo V.

PLoS One. 2011 Apr 18;6(4):e18551. doi: 10.1371/journal.pone.0018551.

20.

Identification of Schistosoma mansoni microRNAs.

Simões MC, Lee J, Djikeng A, Cerqueira GC, Zerlotini A, da Silva-Pereira RA, Dalby AR, LoVerde P, El-Sayed NM, Oliveira G.

BMC Genomics. 2011 Jan 19;12:47. doi: 10.1186/1471-2164-12-47.

21.

The contributions of the Genome Project to the study of schistosomiasis.

Zerlotini A, Oliveira G.

Mem Inst Oswaldo Cruz. 2010 Jul;105(4):367-9. Review.

22.

The genome of the blood fluke Schistosoma mansoni.

Berriman M, Haas BJ, LoVerde PT, Wilson RA, Dillon GP, Cerqueira GC, Mashiyama ST, Al-Lazikani B, Andrade LF, Ashton PD, Aslett MA, Bartholomeu DC, Blandin G, Caffrey CR, Coghlan A, Coulson R, Day TA, Delcher A, DeMarco R, Djikeng A, Eyre T, Gamble JA, Ghedin E, Gu Y, Hertz-Fowler C, Hirai H, Hirai Y, Houston R, Ivens A, Johnston DA, Lacerda D, Macedo CD, McVeigh P, Ning Z, Oliveira G, Overington JP, Parkhill J, Pertea M, Pierce RJ, Protasio AV, Quail MA, Rajandream MA, Rogers J, Sajid M, Salzberg SL, Stanke M, Tivey AR, White O, Williams DL, Wortman J, Wu W, Zamanian M, Zerlotini A, Fraser-Liggett CM, Barrell BG, El-Sayed NM.

Nature. 2009 Jul 16;460(7253):352-8. doi: 10.1038/nature08160.

23.

SchistoDB: a Schistosoma mansoni genome resource.

Zerlotini A, Heiges M, Wang H, Moraes RL, Dominitini AJ, Ruiz JC, Kissinger JC, Oliveira G.

Nucleic Acids Res. 2009 Jan;37(Database issue):D579-82. doi: 10.1093/nar/gkn681. Epub 2008 Oct 8.

24.

Single nucleotide polymorphisms identification in expressed genes of Schistosoma mansoni.

Simões M, Bahia D, Zerlotini A, Torres K, Artiguenave F, Neshich G, Kuser P, Oliveira G.

Mol Biochem Parasitol. 2007 Aug;154(2):134-40. Epub 2007 Apr 13.

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