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Items: 13

1.

Protective role of the vulture facial skin and gut microbiomes aid adaptation to scavenging.

Zepeda Mendoza ML, Roggenbuck M, Manzano Vargas K, Hansen LH, Brunak S, Gilbert MTP, Sicheritz-Pontén T.

Acta Vet Scand. 2018 Oct 11;60(1):61. doi: 10.1186/s13028-018-0415-3.

2.

Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat.

Zepeda Mendoza ML, Xiong Z, Escalera-Zamudio M, Runge AK, Thézé J, Streicker D, Frank HK, Loza-Rubio E, Liu S, Ryder OA, Samaniego Castruita JA, Katzourakis A, Pacheco G, Taboada B, Löber U, Pybus OG, Li Y, Rojas-Anaya E, Bohmann K, Carmona Baez A, Arias CF, Liu S, Greenwood AD, Bertelsen MF, White NE, Bunce M, Zhang G, Sicheritz-Pontén T, Gilbert MPT.

Nat Ecol Evol. 2018 Apr;2(4):659-668. doi: 10.1038/s41559-018-0476-8. Epub 2018 Feb 19.

3.

Evolutionary History of Saber-Toothed Cats Based on Ancient Mitogenomics.

Paijmans JLA, Barnett R, Gilbert MTP, Zepeda-Mendoza ML, Reumer JWF, de Vos J, Zazula G, Nagel D, Baryshnikov GF, Leonard JA, Rohland N, Westbury MV, Barlow A, Hofreiter M.

Curr Biol. 2017 Nov 6;27(21):3330-3336.e5. doi: 10.1016/j.cub.2017.09.033. Epub 2017 Oct 19.

4.

Do Vertebrate Gut Metagenomes Confer Rapid Ecological Adaptation?

Alberdi A, Aizpurua O, Bohmann K, Zepeda-Mendoza ML, Gilbert MTP.

Trends Ecol Evol. 2016 Sep;31(9):689-699. doi: 10.1016/j.tree.2016.06.008. Epub 2016 Jul 21. Review.

PMID:
27453351
5.

Next-generation biology: Sequencing and data analysis approaches for non-model organisms.

da Fonseca RR, Albrechtsen A, Themudo GE, Ramos-Madrigal J, Sibbesen JA, Maretty L, Zepeda-Mendoza ML, Campos PF, Heller R, Pereira RJ.

Mar Genomics. 2016 Dec;30:3-13. doi: 10.1016/j.margen.2016.04.012. Epub 2016 May 13. Review.

6.

DAMe: a toolkit for the initial processing of datasets with PCR replicates of double-tagged amplicons for DNA metabarcoding analyses.

Zepeda-Mendoza ML, Bohmann K, Carmona Baez A, Gilbert MT.

BMC Res Notes. 2016 May 3;9:255. doi: 10.1186/s13104-016-2064-9.

7.

Metagenomic Analysis from the Interior of a Speleothem in Tjuv-Ante's Cave, Northern Sweden.

Zepeda Mendoza ML, Lundberg J, Ivarsson M, Campos P, Nylander JA, Sallstedt T, Dalen L.

PLoS One. 2016 Mar 17;11(3):e0151577. doi: 10.1371/journal.pone.0151577. eCollection 2016.

8.

The evolution of bat nucleic acid-sensing Toll-like receptors.

Escalera-Zamudio M, Zepeda-Mendoza ML, Loza-Rubio E, Rojas-Anaya E, Méndez-Ojeda ML, Arias CF, Greenwood AD.

Mol Ecol. 2015 Dec;24(23):5899-909. doi: 10.1111/mec.13431. Epub 2015 Nov 24.

PMID:
26503258
9.

Odintifier--A computational method for identifying insertions of organellar origin from modern and ancient high-throughput sequencing data based on haplotype phasing.

Samaniego Castruita JA, Zepeda Mendoza ML, Barnett R, Wales N, Gilbert MT.

BMC Bioinformatics. 2015 Jul 28;16:232. doi: 10.1186/s12859-015-0682-1.

10.

A refined model of the genomic basis for phenotypic variation in vertebrate hemostasis.

Ribeiro ÂM, Zepeda-Mendoza ML, Bertelsen MF, Kristensen AT, Jarvis ED, Gilbert MT, da Fonseca RR.

BMC Evol Biol. 2015 Jun 30;15:124. doi: 10.1186/s12862-015-0409-y.

11.

Environmental genes and genomes: understanding the differences and challenges in the approaches and software for their analyses.

Zepeda Mendoza ML, Sicheritz-Pontén T, Gilbert MT.

Brief Bioinform. 2015 Sep;16(5):745-58. doi: 10.1093/bib/bbv001. Epub 2015 Feb 11.

12.

DivA: detection of non-homologous and very divergent regions in protein sequence alignments.

Zepeda Mendoza ML, Nygaard S, da Fonseca RR.

BMC Res Notes. 2014 Nov 18;7:806. doi: 10.1186/1756-0500-7-806.

13.

Second generation sequencing and morphological faecal analysis reveal unexpected foraging behaviour by Myotis nattereri (Chiroptera, Vespertilionidae) in winter.

Hope PR, Bohmann K, Gilbert MTP, Zepeda-Mendoza ML, Razgour O, Jones G.

Front Zool. 2014 May 9;11:39. doi: 10.1186/1742-9994-11-39. eCollection 2014.

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