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Items: 37

1.

Mediator Is Essential for Small Nuclear and Nucleolar RNA Transcription in Yeast.

Tourigny JP, Saleh MM, Schumacher K, Devys D, Zentner GE.

Mol Cell Biol. 2018 Nov 28;38(24). pii: e00296-18. doi: 10.1128/MCB.00296-18. Print 2018 Dec 15.

PMID:
30275344
2.

Distinct patterns of histone acetyltransferase and Mediator deployment at yeast protein-coding genes.

Bruzzone MJ, Grünberg S, Kubik S, Zentner GE, Shore D.

Genes Dev. 2018 Sep 1;32(17-18):1252-1265. doi: 10.1101/gad.312173.118. Epub 2018 Aug 14.

3.

Expanding the genetic toolkit of Tribolium castaneum.

Rylee JC, Siniard DJ, Doucette K, Zentner GE, Zelhof AC.

PLoS One. 2018 Apr 12;13(4):e0195977. doi: 10.1371/journal.pone.0195977. eCollection 2018.

4.

Discovering a binary CTCF code with a little help from BORIS.

Lobanenkov VV, Zentner GE.

Nucleus. 2018 Jan 1;9(1):33-41. doi: 10.1080/19491034.2017.1394536. Epub 2017 Dec 5.

5.

Enzymatic methods for genome-wide profiling of protein binding sites.

Policastro RA, Zentner GE.

Brief Funct Genomics. 2018 Mar 1;17(2):138-145. doi: 10.1093/bfgp/elx030. Review.

PMID:
29028882
6.
7.

Corrigendum: Testis-specific transcriptional regulators selectively occupy BORIS-bound CTCF target regions in mouse male germ cells.

Rivero-Hinojosa S, Kang S, Lobanenkov VV, Zentner GE.

Sci Rep. 2017 Aug 4;7:46891. doi: 10.1038/srep46891.

8.

Genome-wide Mapping of Protein-DNA Interactions with ChEC-seq in Saccharomyces cerevisiae.

Grünberg S, Zentner GE.

J Vis Exp. 2017 Jun 3;(124). doi: 10.3791/55836.

9.

Corrigendum: ChEC-seq kinetics discriminates transcription factor binding sites by DNA sequence and shape in vivo.

Zentner GE, Kasinathan S, Xin B, Rohs R, Henikoff S.

Nat Commun. 2017 Jun 5;8:15723. doi: 10.1038/ncomms15723.

10.

Correspondence: Reply to 'DNA shape is insufficient to explain binding'.

Kasinathan S, Zentner GE, Xin B, Rohs R, Henikoff S.

Nat Commun. 2017 Jun 5;8:15644. doi: 10.1038/ncomms15644. No abstract available.

11.

CRISPR/Cas9 gene drives in genetically variable and nonrandomly mating wild populations.

Drury DW, Dapper AL, Siniard DJ, Zentner GE, Wade MJ.

Sci Adv. 2017 May 19;3(5):e1601910. doi: 10.1126/sciadv.1601910. eCollection 2017 May.

12.

Genome-wide characterization of Mediator recruitment, function, and regulation.

Grünberg S, Zentner GE.

Transcription. 2017 May 27;8(3):169-174. doi: 10.1080/21541264.2017.1291082. Epub 2017 Feb 8. Review.

13.

Testis-specific transcriptional regulators selectively occupy BORIS-bound CTCF target regions in mouse male germ cells.

Rivero-Hinojosa S, Kang S, Lobanenkov VV, Zentner GE.

Sci Rep. 2017 Feb 1;7:41279. doi: 10.1038/srep41279. Erratum in: Sci Rep. 2017 Aug 04;7:46891.

14.

Mediator binding to UASs is broadly uncoupled from transcription and cooperative with TFIID recruitment to promoters.

Grünberg S, Henikoff S, Hahn S, Zentner GE.

EMBO J. 2016 Nov 15;35(22):2435-2446. Epub 2016 Oct 20.

15.

Corrigendum: ChEC-seq kinetics discriminates transcription factor binding sites by DNA sequence and shape in vivo.

Zentner GE, Kasinathan S, Xin B, Rohs R, Henikoff S.

Nat Commun. 2015 Dec 16;6:10264. doi: 10.1038/ncomms10264. No abstract available.

16.

ChEC-seq kinetics discriminates transcription factor binding sites by DNA sequence and shape in vivo.

Zentner GE, Kasinathan S, Xin B, Rohs R, Henikoff S.

Nat Commun. 2015 Oct 22;6:8733. doi: 10.1038/ncomms9733. Erratum in: Nat Commun. 2015;6:10264.

17.

Epigenome editing made easy.

Zentner GE, Henikoff S.

Nat Biotechnol. 2015 Jun;33(6):606-7. doi: 10.1038/nbt.3248. No abstract available.

PMID:
26057978
18.

Mapping regulatory factors by immunoprecipitation from native chromatin.

Orsi GA, Kasinathan S, Zentner GE, Henikoff S, Ahmad K.

Curr Protoc Mol Biol. 2015 Apr 1;110:21.31.1-25. doi: 10.1002/0471142727.mb2131s110.

19.

Asymmetric nucleosomes flank promoters in the budding yeast genome.

Ramachandran S, Zentner GE, Henikoff S.

Genome Res. 2015 Mar;25(3):381-90. doi: 10.1101/gr.182618.114. Epub 2014 Dec 9.

20.

High-resolution digital profiling of the epigenome.

Zentner GE, Henikoff S.

Nat Rev Genet. 2014 Dec;15(12):814-27. doi: 10.1038/nrg3798. Epub 2014 Oct 9. Review.

PMID:
25297728
21.

Epigenomic comparison reveals activation of "seed" enhancers during transition from naive to primed pluripotency.

Factor DC, Corradin O, Zentner GE, Saiakhova A, Song L, Chenoweth JG, McKay RD, Crawford GE, Scacheri PC, Tesar PJ.

Cell Stem Cell. 2014 Jun 5;14(6):854-63. doi: 10.1016/j.stem.2014.05.005.

22.

Uracil DNA glycosylase (UNG) loss enhances DNA double strand break formation in human cancer cells exposed to pemetrexed.

Weeks LD, Zentner GE, Scacheri PC, Gerson SL.

Cell Death Dis. 2014 Feb 6;5:e1045. doi: 10.1038/cddis.2013.477.

23.

Genomic characterization of the mouse ribosomal DNA locus.

Zentner GE, Balow SA, Scacheri PC.

G3 (Bethesda). 2014 Feb 19;4(2):243-54. doi: 10.1534/g3.113.009290.

24.

High-resolution mapping of transcription factor binding sites on native chromatin.

Kasinathan S, Orsi GA, Zentner GE, Ahmad K, Henikoff S.

Nat Methods. 2014 Feb;11(2):203-9. doi: 10.1038/nmeth.2766. Epub 2013 Dec 15.

25.

Mot1 redistributes TBP from TATA-containing to TATA-less promoters.

Zentner GE, Henikoff S.

Mol Cell Biol. 2013 Dec;33(24):4996-5004. doi: 10.1128/MCB.01218-13. Epub 2013 Oct 21.

26.

Knockdown of fbxl10/kdm2bb rescues chd7 morphant phenotype in a zebrafish model of CHARGE syndrome.

Balow SA, Pierce LX, Zentner GE, Conrad PA, Davis S, Sabaawy HE, McDermott BM Jr, Scacheri PC.

Dev Biol. 2013 Oct 1;382(1):57-69. doi: 10.1016/j.ydbio.2013.07.026. Epub 2013 Aug 3.

27.

ISWI and CHD chromatin remodelers bind promoters but act in gene bodies.

Zentner GE, Tsukiyama T, Henikoff S.

PLoS Genet. 2013;9(2):e1003317. doi: 10.1371/journal.pgen.1003317. Epub 2013 Feb 28.

28.

Regulation of nucleosome dynamics by histone modifications.

Zentner GE, Henikoff S.

Nat Struct Mol Biol. 2013 Mar;20(3):259-66. doi: 10.1038/nsmb.2470. Review.

PMID:
23463310
29.

Surveying the epigenomic landscape, one base at a time.

Zentner GE, Henikoff S.

Genome Biol. 2012 Oct 22;13(10):250. doi: 10.1186/gb4051. Review.

30.

The chromatin fingerprint of gene enhancer elements.

Zentner GE, Scacheri PC.

J Biol Chem. 2012 Sep 7;287(37):30888-96. doi: 10.1074/jbc.R111.296491. Epub 2012 Sep 5. Review.

31.

Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions.

Zentner GE, Tesar PJ, Scacheri PC.

Genome Res. 2011 Aug;21(8):1273-83. doi: 10.1101/gr.122382.111. Epub 2011 Jun 1.

32.

Deep congenic analysis identifies many strong, context-dependent QTLs, one of which, Slc35b4, regulates obesity and glucose homeostasis.

Yazbek SN, Buchner DA, Geisinger JM, Burrage LC, Spiezio SH, Zentner GE, Hsieh CW, Scacheri PC, Croniger CM, Nadeau JH.

Genome Res. 2011 Jul;21(7):1065-73. doi: 10.1101/gr.120741.111. Epub 2011 Apr 19.

33.

Integrative genomic analysis of human ribosomal DNA.

Zentner GE, Saiakhova A, Manaenkov P, Adams MD, Scacheri PC.

Nucleic Acids Res. 2011 Jul;39(12):4949-60. doi: 10.1093/nar/gkq1326. Epub 2011 Feb 25.

34.

Role of canonical Wnt signaling/ß-catenin via Dermo1 in cranial dermal cell development.

Tran TH, Jarrell A, Zentner GE, Welsh A, Brownell I, Scacheri PC, Atit R.

Development. 2010 Dec;137(23):3973-84. doi: 10.1242/dev.056473. Epub 2010 Oct 27.

35.

CHD7 functions in the nucleolus as a positive regulator of ribosomal RNA biogenesis.

Zentner GE, Hurd EA, Schnetz MP, Handoko L, Wang C, Wang Z, Wei C, Tesar PJ, Hatzoglou M, Martin DM, Scacheri PC.

Hum Mol Genet. 2010 Sep 15;19(18):3491-501. doi: 10.1093/hmg/ddq265. Epub 2010 Jun 29.

36.

Molecular and phenotypic aspects of CHD7 mutation in CHARGE syndrome.

Zentner GE, Layman WS, Martin DM, Scacheri PC.

Am J Med Genet A. 2010 Mar;152A(3):674-86. doi: 10.1002/ajmg.a.33323. Review.

37.

Genomic distribution of CHD7 on chromatin tracks H3K4 methylation patterns.

Schnetz MP, Bartels CF, Shastri K, Balasubramanian D, Zentner GE, Balaji R, Zhang X, Song L, Wang Z, Laframboise T, Crawford GE, Scacheri PC.

Genome Res. 2009 Apr;19(4):590-601. doi: 10.1101/gr.086983.108. Epub 2009 Feb 27.

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