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Items: 50


The return of the frogs: The importance of habitat refugia in maintaining diversity during a disease outbreak.

McKnight DT, Lal MM, Bower DS, Schwarzkopf L, Alford RA, Zenger KR.

Mol Ecol. 2019 Jun;28(11):2731-2745. doi: 10.1111/mec.15108. Epub 2019 Jun 23.


Genomic Selection in Aquaculture: Application, Limitations and Opportunities With Special Reference to Marine Shrimp and Pearl Oysters.

Zenger KR, Khatkar MS, Jones DB, Khalilisamani N, Jerry DR, Raadsma HW.

Front Genet. 2019 Jan 23;9:693. doi: 10.3389/fgene.2018.00693. eCollection 2018. Review.


Genome-wide SNP analyses reveal high gene flow and signatures of local adaptation among the scalloped spiny lobster (Panulirus homarus) along the Omani coastline.

Al-Breiki RD, Kjeldsen SR, Afzal H, Al Hinai MS, Zenger KR, Jerry DR, Al-Abri MA, Delghandi M.

BMC Genomics. 2018 Sep 19;19(1):690. doi: 10.1186/s12864-018-5044-8.


Sex-specific dmrt1 and cyp19a1 methylation and alternative splicing in gonads of the protandrous hermaphrodite barramundi.

Domingos JA, Budd AM, Banh QQ, Goldsbury JA, Zenger KR, Jerry DR.

PLoS One. 2018 Sep 18;13(9):e0204182. doi: 10.1371/journal.pone.0204182. eCollection 2018.


Genomic comparisons reveal biogeographic and anthropogenic impacts in the koala (Phascolarctos cinereus): a dietary-specialist species distributed across heterogeneous environments.

Kjeldsen SR, Raadsma HW, Leigh KA, Tobey JR, Phalen D, Krockenberger A, Ellis WA, Hynes E, Higgins DP, Zenger KR.

Heredity (Edinb). 2019 May;122(5):525-544. doi: 10.1038/s41437-018-0144-4. Epub 2018 Sep 12.


De novo assembly, characterization, functional annotation and expression patterns of the black tiger shrimp (Penaeus monodon) transcriptome.

Huerlimann R, Wade NM, Gordon L, Montenegro JD, Goodall J, McWilliam S, Tinning M, Siemering K, Giardina E, Donovan D, Sellars MJ, Cowley JA, Condon K, Coman GJ, Khatkar MS, Raadsma HW, Maes GE, Zenger KR, Jerry DR.

Sci Rep. 2018 Sep 10;8(1):13553. doi: 10.1038/s41598-018-31148-4.


The State of "Omics" Research for Farmed Penaeids: Advances in Research and Impediments to Industry Utilization.

Guppy JL, Jones DB, Jerry DR, Wade NM, Raadsma HW, Huerlimann R, Zenger KR.

Front Genet. 2018 Aug 3;9:282. doi: 10.3389/fgene.2018.00282. eCollection 2018. Review.


Gene flow and genetic structure in Nile perch, Lates niloticus, from African freshwater rivers and lakes.

Basiita RK, Zenger KR, Mwanja MT, Jerry DR.

PLoS One. 2018 Jul 11;13(7):e0200001. doi: 10.1371/journal.pone.0200001. eCollection 2018.


Genome-wide comparisons reveal a clinal species pattern within a holobenthic octopod-the Australian Southern blue-ringed octopus, Hapalochlaena maculosa (Cephalopoda: Octopodidae).

Morse P, Kjeldsen SR, Meekan MG, Mccormick MI, Finn JK, Huffard CL, Zenger KR.

Ecol Evol. 2018 Jan 25;8(4):2253-2267. doi: 10.1002/ece3.3845. eCollection 2018 Feb.


Genome-wide comparisons reveal evidence for a species complex in the black-lip pearl oyster Pinctada margaritifera (Bivalvia: Pteriidae).

Lal MM, Southgate PC, Jerry DR, Zenger KR.

Sci Rep. 2018 Jan 9;8(1):191. doi: 10.1038/s41598-017-18602-5.


Rapid and comprehensive discovery of unreported shellfish allergens using large-scale transcriptomic and proteomic resources.

Nugraha R, Kamath SD, Johnston E, Zenger KR, Rolland JM, O'Hehir RE, Lopata AL.

J Allergy Clin Immunol. 2018 Apr;141(4):1501-1504.e8. doi: 10.1016/j.jaci.2017.11.028. Epub 2017 Dec 16. No abstract available.


Fighting an uphill battle: the recovery of frogs in Australia's Wet Tropics.

McKnight DT, Alford RA, Hoskin CJ, Schwarzkopf L, Greenspan SE, Zenger KR, Bower DS.

Ecology. 2017 Dec;98(12):3221-3223. doi: 10.1002/ecy.2019. Epub 2017 Nov 15. No abstract available.


A comparative integrated gene-based linkage and locus ordering by linkage disequilibrium map for the Pacific white shrimp, Litopenaeus vannamei.

Jones DB, Jerry DR, Khatkar MS, Raadsma HW, Steen HV, Prochaska J, Forêt S, Zenger KR.

Sci Rep. 2017 Sep 4;7(1):10360. doi: 10.1038/s41598-017-10515-7.


Extensive genetic differentiation detected within a model marsupial, the tammar wallaby (Notamacropus eugenii).

Eldridge MD, Miller EJ, Neaves LE, Zenger KR, Herbert CA.

PLoS One. 2017 Mar 3;12(3):e0172777. doi: 10.1371/journal.pone.0172777. eCollection 2017.


A Parallel Population Genomic and Hydrodynamic Approach to Fishery Management of Highly-Dispersive Marine Invertebrates: The Case of the Fijian Black-Lip Pearl Oyster Pinctada margaritifera.

Lal MM, Southgate PC, Jerry DR, Bosserelle C, Zenger KR.

PLoS One. 2016 Aug 25;11(8):e0161390. doi: 10.1371/journal.pone.0161390. eCollection 2016.


Unravelling the effects of gene flow and selection in highly connected populations of the silver-lip pearl oyster (Pinctada maxima).

Nayfa MG, Zenger KR.

Mar Genomics. 2016 Aug;28:99-106. doi: 10.1016/j.margen.2016.02.005. Epub 2016 Feb 28.


Fishing for divergence in a sea of connectivity: The utility of ddRADseq genotyping in a marine invertebrate, the black-lip pearl oyster Pinctada margaritifera.

Lal MM, Southgate PC, Jerry DR, Zenger KR.

Mar Genomics. 2016 Feb;25:57-68. doi: 10.1016/j.margen.2015.10.010. Epub 2015 Nov 3.


Whole-genome shotgun sequence assembly enables rapid gene characterization in the tropical fish barramundi, Lates calcarifer.

Domingos JA, Zenger KR, Jerry DR.

Anim Genet. 2015 Aug;46(4):468-9. doi: 10.1111/age.12312. No abstract available.


Phylogenetic Analysis of Nucleus-Encoded Acetyl-CoA Carboxylases Targeted at the Cytosol and Plastid of Algae.

Huerlimann R, Zenger KR, Jerry DR, Heimann K.

PLoS One. 2015 Jul 1;10(7):e0131099. doi: 10.1371/journal.pone.0131099. eCollection 2015.


netview p: a network visualization tool to unravel complex population structure using genome-wide SNPs.

Steinig EJ, Neuditschko M, Khatkar MS, Raadsma HW, Zenger KR.

Mol Ecol Resour. 2016 Jan;16(1):216-27. doi: 10.1111/1755-0998.12442. Epub 2015 Jul 24.


Development of genome-wide microsatellite genetic resources in a commercially important African freshwater fish species - the Nile perch, Lates niloticus.

Basiita RK, Zenger KR, Mwanja MT, Jerry DR.

Anim Genet. 2015 Jun;46(3):340. doi: 10.1111/age.12283. Epub 2015 Mar 5. No abstract available.


Effects of growth phase and nitrogen starvation on expression of fatty acid desaturases and fatty acid composition of Isochrysis aff. galbana (TISO).

Huerlimann R, Steinig EJ, Loxton H, Zenger KR, Jerry DR, Heimann K.

Gene. 2014 Jul 15;545(1):36-44. doi: 10.1016/j.gene.2014.05.009. Epub 2014 May 4.


The effect of nitrogen limitation on acetyl-CoA carboxylase expression and fatty acid content in Chromera velia and Isochrysis aff. galbana (TISO).

Huerlimann R, Steinig EJ, Loxton H, Zenger KR, Jerry DR, Heimann K.

Gene. 2014 Jun 15;543(2):204-11. doi: 10.1016/j.gene.2014.04.022. Epub 2014 Apr 13.


A high-density SNP genetic linkage map for the silver-lipped pearl oyster, Pinctada maxima: a valuable resource for gene localisation and marker-assisted selection.

Jones DB, Jerry DR, Khatkar MS, Raadsma HW, Zenger KR.

BMC Genomics. 2013 Nov 20;14:810. doi: 10.1186/1471-2164-14-810.


Genome-wide SNP validation and mantle tissue transcriptome analysis in the silver-lipped pearl oyster, Pinctada maxima.

Jones DB, Jerry DR, Forêt S, Konovalov DA, Zenger KR.

Mar Biotechnol (NY). 2013 Dec;15(6):647-58. doi: 10.1007/s10126-013-9514-3. Epub 2013 May 30.


Transcriptome analysis of biomineralisation-related genes within the pearl sac: host and donor oyster contribution.

McGinty EL, Zenger KR, Jones DB, Jerry DR.

Mar Genomics. 2012 Mar;5:27-33. doi: 10.1016/j.margen.2011.08.006. Epub 2012 Jan 21.


In silico whole-genome EST analysis reveals 2322 novel microsatellites for the silver-lipped pearl oyster, Pinctada maxima.

Jones DB, Zenger KR, Jerry DR.

Mar Genomics. 2011 Dec;4(4):287-90. doi: 10.1016/j.margen.2011.06.007. Epub 2011 Aug 15.


A second-generation anchored genetic linkage map of the tammar wallaby (Macropus eugenii).

Wang C, Webley L, Wei KJ, Wakefield MJ, Patel HR, Deakin JE, Alsop A, Marshall Graves JA, Cooper DW, Nicholas FW, Zenger KR.

BMC Genet. 2011 Aug 19;12:72. doi: 10.1186/1471-2156-12-72.


Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development.

Renfree MB, Papenfuss AT, Deakin JE, Lindsay J, Heider T, Belov K, Rens W, Waters PD, Pharo EA, Shaw G, Wong ES, Lefèvre CM, Nicholas KR, Kuroki Y, Wakefield MJ, Zenger KR, Wang C, Ferguson-Smith M, Nicholas FW, Hickford D, Yu H, Short KR, Siddle HV, Frankenberg SR, Chew KY, Menzies BR, Stringer JM, Suzuki S, Hore TA, Delbridge ML, Patel HR, Mohammadi A, Schneider NY, Hu Y, O'Hara W, Al Nadaf S, Wu C, Feng ZP, Cocks BG, Wang J, Flicek P, Searle SM, Fairley S, Beal K, Herrero J, Carone DM, Suzuki Y, Sugano S, Toyoda A, Sakaki Y, Kondo S, Nishida Y, Tatsumoto S, Mandiou I, Hsu A, McColl KA, Lansdell B, Weinstock G, Kuczek E, McGrath A, Wilson P, Men A, Hazar-Rethinam M, Hall A, Davis J, Wood D, Williams S, Sundaravadanam Y, Muzny DM, Jhangiani SN, Lewis LR, Morgan MB, Okwuonu GO, Ruiz SJ, Santibanez J, Nazareth L, Cree A, Fowler G, Kovar CL, Dinh HH, Joshi V, Jing C, Lara F, Thornton R, Chen L, Deng J, Liu Y, Shen JY, Song XZ, Edson J, Troon C, Thomas D, Stephens A, Yapa L, Levchenko T, Gibbs RA, Cooper DW, Speed TP, Fujiyama A, Graves JA, O'Neill RJ, Pask AJ, Forrest SM, Worley KC.

Genome Biol. 2011 Aug 29;12(8):R81. doi: 10.1186/gb-2011-12-8-r81. Erratum in: Genome Biol. 2011;12(12):414. Patel, Hardip R [added].


A first-generation integrated tammar wallaby map and its use in creating a tammar wallaby first-generation virtual genome map.

Wang C, Deakin JE, Rens W, Zenger KR, Belov K, Marshall Graves JA, Nicholas FW.

BMC Genomics. 2011 Aug 19;12:422. doi: 10.1186/1471-2164-12-422.


Molecular detection of hybridization between sympatric kangaroo species in south-eastern Australia.

Neaves LE, Zenger KR, Cooper DW, Eldridge MD.

Heredity (Edinb). 2010 May;104(5):502-12. doi: 10.1038/hdy.2009.137. Epub 2009 Oct 7.


Landscape discontinuities influence gene flow and genetic structure in a large, vagile Australian mammal, Macropus fuliginosus.

Neaves LE, Zenger KR, Prince RI, Eldridge MD, Cooper DW.

Mol Ecol. 2009 Aug;18(16):3363-78. doi: 10.1111/j.1365-294X.2009.04293.x. Epub 2009 Jul 31.


Mapping quantitative trait loci (QTL) in sheep. I. A new male framework linkage map and QTL for growth rate and body weight.

Raadsma HW, Thomson PC, Zenger KR, Cavanagh C, Lam MK, Jonas E, Jones M, Attard G, Palmer D, Nicholas FW.

Genet Sel Evol. 2009 Apr 24;41:34. doi: 10.1186/1297-9686-41-34.


Predicting genetic merit for mastitis and fertility in dairy cattle using genome wide selection and high density SNP screens.

Raadsma HW, Moser G, Crump RE, Khatkar MS, Zenger KR, Cavanagh JAL, Hawken RJ, Hobbs M, Barris W, Solkner J, Nicholas FW, Tier B.

Dev Biol (Basel). 2008;132:219-223. doi: 10.1159/000317163.


Extent of genome-wide linkage disequilibrium in Australian Holstein-Friesian cattle based on a high-density SNP panel.

Khatkar MS, Nicholas FW, Collins AR, Zenger KR, Cavanagh JA, Barris W, Schnabel RD, Taylor JF, Raadsma HW.

BMC Genomics. 2008 Apr 24;9:187. doi: 10.1186/1471-2164-9-187.


A primary assembly of a bovine haplotype block map based on a 15,036-single-nucleotide polymorphism panel genotyped in holstein-friesian cattle.

Khatkar MS, Zenger KR, Hobbs M, Hawken RJ, Cavanagh JA, Barris W, McClintock AE, McClintock S, Thomson PC, Tier B, Nicholas FW, Raadsma HW.

Genetics. 2007 Jun;176(2):763-72. Epub 2007 Apr 15.


Widespread utility of highly informative AFLP molecular markers across divergent shark species.

Zenger KR, Stow AJ, Peddemors V, Briscoe DA, Harcourt RG.

J Hered. 2006 Nov-Dec;97(6):607-11. Epub 2006 Dec 5.


A first-generation metric linkage disequilibrium map of bovine chromosome 6.

Khatkar MS, Collins A, Cavanagh JA, Hawken RJ, Hobbs M, Zenger KR, Barris W, McClintock AE, Thomson PC, Nicholas FW, Raadsma HW.

Genetics. 2006 Sep;174(1):79-85. Epub 2006 Jul 2.


Technical note: Whole-genome amplification of DNA extracted from cattle semen samples.

Hawken RJ, Cavanagh JA, Meadows JR, Khatkar MS, Husaini Y, Zenger KR, McClintock S, McClintock AE, Raadsma HW.

J Dairy Sci. 2006 Jun;89(6):2217-21.


Quantitative trait loci for steady-state platelet count in mice.

Cheung CC, Martin IC, Zenger KR, Donald JA, Thomson PC, Moran C, Buckley MF.

Mamm Genome. 2004 Oct;15(10):784-97.


A rapid population expansion retains genetic diversity within European rabbits in Australia.

Zenger KR, Richardson BJ, Vachot-Griffin AM.

Mol Ecol. 2003 Mar;12(3):789-94.


Echidna IgA supports mammalian unity and traditional Therian relationship.

Belov K, Zenger KR, Hellman L, Cooper DW.

Mamm Genome. 2002 Nov;13(11):656-63.


Ontogeny of immunoglobulin expression in the brushtail possum (Trichosurus vulpecula).

Belov K, Nguyen MA, Zenger KR, Cooper DW.

Dev Comp Immunol. 2002 Sep;26(7):599-602.


Characterization of 14 macropod microsatellite genetic markers.

Zenger KR, Cooper DW.

Anim Genet. 2001 Jun;32(3):166-7. No abstract available.


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