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Items: 13

1.

Ice-Age Climate Adaptations Trap the Alpine Marmot in a State of Low Genetic Diversity.

Gossmann TI, Shanmugasundram A, Börno S, Duvaux L, Lemaire C, Kuhl H, Klages S, Roberts LD, Schade S, Gostner JM, Hildebrand F, Vowinckel J, Bichet C, Mülleder M, Calvani E, Zelezniak A, Griffin JL, Bork P, Allaine D, Cohas A, Welch JJ, Timmermann B, Ralser M.

Curr Biol. 2019 May 20;29(10):1712-1720.e7. doi: 10.1016/j.cub.2019.04.020. Epub 2019 May 9.

2.

Machine Learning Predicts the Yeast Metabolome from the Quantitative Proteome of Kinase Knockouts.

Zelezniak A, Vowinckel J, Capuano F, Messner CB, Demichev V, Polowsky N, Mülleder M, Kamrad S, Klaus B, Keller MA, Ralser M.

Cell Syst. 2018 Sep 26;7(3):269-283.e6. doi: 10.1016/j.cels.2018.08.001. Epub 2018 Sep 5.

3.

Nutritional preferences of human gut bacteria reveal their metabolic idiosyncrasies.

Tramontano M, Andrejev S, Pruteanu M, Klünemann M, Kuhn M, Galardini M, Jouhten P, Zelezniak A, Zeller G, Bork P, Typas A, Patil KR.

Nat Microbiol. 2018 Apr;3(4):514-522. doi: 10.1038/s41564-018-0123-9. Epub 2018 Mar 19.

PMID:
29556107
4.

Cost-effective generation of precise label-free quantitative proteomes in high-throughput by microLC and data-independent acquisition.

Vowinckel J, Zelezniak A, Bruderer R, Mülleder M, Reiter L, Ralser M.

Sci Rep. 2018 Mar 12;8(1):4346. doi: 10.1038/s41598-018-22610-4.

5.

Attenuated psychosis and basic self-disturbance as risk factors for depression and suicidal ideation/behaviour in community-dwelling adolescents.

Koren D, Rothschild-Yakar L, Lacoua L, Brunstein-Klomek A, Zelezniak A, Parnas J, Shahar G.

Early Interv Psychiatry. 2019 Jun;13(3):532-538. doi: 10.1111/eip.12516. Epub 2017 Nov 22.

PMID:
29164828
6.

The self-inhibitory nature of metabolic networks and its alleviation through compartmentalization.

Alam MT, Olin-Sandoval V, Stincone A, Keller MA, Zelezniak A, Luisi BF, Ralser M.

Nat Commun. 2017 Jul 10;8:16018. doi: 10.1038/ncomms16018.

7.

Functional Metabolomics Describes the Yeast Biosynthetic Regulome.

Mülleder M, Calvani E, Alam MT, Wang RK, Eckerstorfer F, Zelezniak A, Ralser M.

Cell. 2016 Oct 6;167(2):553-565.e12. doi: 10.1016/j.cell.2016.09.007. Epub 2016 Sep 29.

8.

The metabolic background is a global player in Saccharomyces gene expression epistasis.

Alam MT, Zelezniak A, Mülleder M, Shliaha P, Schwarz R, Capuano F, Vowinckel J, Radmanesfahar E, Krüger A, Calvani E, Michel S, Börno S, Christen S, Patil KR, Timmermann B, Lilley KS, Ralser M.

Nat Microbiol. 2016 Feb 1;1:15030. doi: 10.1038/nmicrobiol.2015.30.

9.

Metabolic dependencies drive species co-occurrence in diverse microbial communities.

Zelezniak A, Andrejev S, Ponomarova O, Mende DR, Bork P, Patil KR.

Proc Natl Acad Sci U S A. 2015 May 19;112(20):6449-54. doi: 10.1073/pnas.1421834112. Epub 2015 May 4. Erratum in: Proc Natl Acad Sci U S A. 2015 Dec 22;112(51):E7156.

10.

Contribution of network connectivity in determining the relationship between gene expression and metabolite concentration changes.

Zelezniak A, Sheridan S, Patil KR.

PLoS Comput Biol. 2014 Apr 24;10(4):e1003572. doi: 10.1371/journal.pcbi.1003572. eCollection 2014 Apr.

11.

Prediction and identification of sequences coding for orphan enzymes using genomic and metagenomic neighbours.

Yamada T, Waller AS, Raes J, Zelezniak A, Perchat N, Perret A, Salanoubat M, Patil KR, Weissenbach J, Bork P.

Mol Syst Biol. 2012 May 8;8:581. doi: 10.1038/msb.2012.13.

12.

Flux coupling and transcriptional regulation within the metabolic network of the photosynthetic bacterium Synechocystis sp. PCC6803.

Montagud A, Zelezniak A, Navarro E, de Córdoba PF, Urchueguía JF, Patil KR.

Biotechnol J. 2011 Mar;6(3):330-42. doi: 10.1002/biot.201000109. Epub 2011 Jan 11.

PMID:
21226012
13.

Metabolic network topology reveals transcriptional regulatory signatures of type 2 diabetes.

Zelezniak A, Pers TH, Soares S, Patti ME, Patil KR.

PLoS Comput Biol. 2010 Apr 1;6(4):e1000729. doi: 10.1371/journal.pcbi.1000729.

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