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Items: 1 to 50 of 63

1.

Temporal Filtering to Improve Single Molecule Identification in High Background Samples.

Reismann AWAF, Atanasova L, Schrangl L, Zeilinger S, Schütz GJ.

Molecules. 2018 Dec 17;23(12). pii: E3338. doi: 10.3390/molecules23123338.

2.

The Gpr1-regulated Sur7 family protein Sfp2 is required for hyphal growth and cell wall stability in the mycoparasite Trichoderma atroviride.

Atanasova L, Gruber S, Lichius A, Radebner T, Abendstein L, Münsterkötter M, Stralis-Pavese N, Łabaj PP, Kreil DP, Zeilinger S.

Sci Rep. 2018 Aug 13;8(1):12064. doi: 10.1038/s41598-018-30500-y.

3.

Necrotrophic Mycoparasites and Their Genomes.

Karlsson M, Atanasova L, Jensen DF, Zeilinger S.

Microbiol Spectr. 2017 Mar;5(2). doi: 10.1128/microbiolspec.FUNK-0016-2016. Review.

PMID:
28281442
4.

A whole-blood transcriptome meta-analysis identifies gene expression signatures of cigarette smoking.

Huan T, Joehanes R, Schurmann C, Schramm K, Pilling LC, Peters MJ, Mägi R, DeMeo D, O'Connor GT, Ferrucci L, Teumer A, Homuth G, Biffar R, Völker U, Herder C, Waldenberger M, Peters A, Zeilinger S, Metspalu A, Hofman A, Uitterlinden AG, Hernandez DG, Singleton AB, Bandinelli S, Munson PJ, Lin H, Benjamin EJ, Esko T, Grabe HJ, Prokisch H, van Meurs JB, Melzer D, Levy D.

Hum Mol Genet. 2016 Nov 1;25(21):4611-4623. doi: 10.1093/hmg/ddw288.

5.

Visualizing fungal metabolites during mycoparasitic interaction by MALDI mass spectrometry imaging.

Holzlechner M, Reitschmidt S, Gruber S, Zeilinger S, Marchetti-Deschmann M.

Proteomics. 2016 Jun;16(11-12):1742-6. doi: 10.1002/pmic.201500510. Epub 2016 Apr 13.

6.

The Genomes of Three Uneven Siblings: Footprints of the Lifestyles of Three Trichoderma Species.

Schmoll M, Dattenböck C, Carreras-Villaseñor N, Mendoza-Mendoza A, Tisch D, Alemán MI, Baker SE, Brown C, Cervantes-Badillo MG, Cetz-Chel J, Cristobal-Mondragon GR, Delaye L, Esquivel-Naranjo EU, Frischmann A, Gallardo-Negrete Jde J, García-Esquivel M, Gomez-Rodriguez EY, Greenwood DR, Hernández-Oñate M, Kruszewska JS, Lawry R, Mora-Montes HM, Muñoz-Centeno T, Nieto-Jacobo MF, Nogueira Lopez G, Olmedo-Monfil V, Osorio-Concepcion M, Piłsyk S, Pomraning KR, Rodriguez-Iglesias A, Rosales-Saavedra MT, Sánchez-Arreguín JA, Seidl-Seiboth V, Stewart A, Uresti-Rivera EE, Wang CL, Wang TF, Zeilinger S, Casas-Flores S, Herrera-Estrella A.

Microbiol Mol Biol Rev. 2016 Feb 10;80(1):205-327. doi: 10.1128/MMBR.00040-15. Print 2016 Mar. Review.

7.

Friends or foes? Emerging insights from fungal interactions with plants.

Zeilinger S, Gupta VK, Dahms TE, Silva RN, Singh HB, Upadhyay RS, Gomes EV, Tsui CK, Nayak S C.

FEMS Microbiol Rev. 2016 Mar;40(2):182-207. doi: 10.1093/femsre/fuv045. Epub 2015 Nov 21. Review.

8.

The transcriptional landscape of age in human peripheral blood.

Peters MJ, Joehanes R, Pilling LC, Schurmann C, Conneely KN, Powell J, Reinmaa E, Sutphin GL, Zhernakova A, Schramm K, Wilson YA, Kobes S, Tukiainen T; NABEC/UKBEC Consortium, Ramos YF, Göring HH, Fornage M, Liu Y, Gharib SA, Stranger BE, De Jager PL, Aviv A, Levy D, Murabito JM, Munson PJ, Huan T, Hofman A, Uitterlinden AG, Rivadeneira F, van Rooij J, Stolk L, Broer L, Verbiest MM, Jhamai M, Arp P, Metspalu A, Tserel L, Milani L, Samani NJ, Peterson P, Kasela S, Codd V, Peters A, Ward-Caviness CK, Herder C, Waldenberger M, Roden M, Singmann P, Zeilinger S, Illig T, Homuth G, Grabe HJ, Völzke H, Steil L, Kocher T, Murray A, Melzer D, Yaghootkar H, Bandinelli S, Moses EK, Kent JW, Curran JE, Johnson MP, Williams-Blangero S, Westra HJ, McRae AF, Smith JA, Kardia SL, Hovatta I, Perola M, Ripatti S, Salomaa V, Henders AK, Martin NG, Smith AK, Mehta D, Binder EB, Nylocks KM, Kennedy EM, Klengel T, Ding J, Suchy-Dicey AM, Enquobahrie DA, Brody J, Rotter JI, Chen YD, Houwing-Duistermaat J, Kloppenburg M, Slagboom PE, Helmer Q, den Hollander W, Bean S, Raj T, Bakhshi N, Wang QP, Oyston LJ, Psaty BM, Tracy RP, Montgomery GW, Turner ST, Blangero J, Meulenbelt I, Ressler KJ, Yang J, Franke L, Kettunen J, Visscher PM, Neely GG, Korstanje R, Hanson RL, Prokisch H, Ferrucci L, Esko T, Teumer A, van Meurs JB, Johnson AD.

Nat Commun. 2015 Oct 22;6:8570. doi: 10.1038/ncomms9570.

9.

Molecular Characterization of the NLRC4 Expression in Relation to Interleukin-18 Levels.

Zeller T, Haase T, Müller C, Riess H, Lau D, Zeller S, Krause J, Baumert J, Pless O, Dupuis J, Wild PS, Eleftheriadis M, Waldenberger M, Zeilinger S, Ziegler A, Peters A, Tiret L, Proust C, Marzi C, Munzel T, Strauch K, Prokisch H, Lackner KJ, Herder C, Thorand B, Benjamin EJ, Blankenberg S, Koenig W, Schnabel RB.

Circ Cardiovasc Genet. 2015 Oct;8(5):717-26. doi: 10.1161/CIRCGENETICS.115.001079. Epub 2015 Sep 11.

10.

The peptaibiotics database--a comprehensive online resource.

Neumann NK, Stoppacher N, Zeilinger S, Degenkolb T, Brückner H, Schuhmacher R.

Chem Biodivers. 2015 May;12(5):743-51. doi: 10.1002/cbdv.201400393.

PMID:
26010663
11.

Mitochondrial GWA Analysis of Lipid Profile Identifies Genetic Variants to Be Associated with HDL Cholesterol and Triglyceride Levels.

Flaquer A, Rospleszcz S, Reischl E, Zeilinger S, Prokisch H, Meitinger T, Meisinger C, Peters A, Waldenberger M, Grallert H, Strauch K.

PLoS One. 2015 May 6;10(5):e0126294. doi: 10.1371/journal.pone.0126294. eCollection 2015.

12.
13.

Prenatal exposure to maternal cigarette smoking and DNA methylation: epigenome-wide association in a discovery sample of adolescents and replication in an independent cohort at birth through 17 years of age.

Lee KW, Richmond R, Hu P, French L, Shin J, Bourdon C, Reischl E, Waldenberger M, Zeilinger S, Gaunt T, McArdle W, Ring S, Woodward G, Bouchard L, Gaudet D, Smith GD, Relton C, Paus T, Pausova Z.

Environ Health Perspect. 2015 Feb;123(2):193-9. doi: 10.1289/ehp.1408614. Epub 2014 Oct 17.

14.

On the potential of models for location and scale for genome-wide DNA methylation data.

Wahl S, Fenske N, Zeilinger S, Suhre K, Gieger C, Waldenberger M, Grallert H, Schmid M.

BMC Bioinformatics. 2014 Jul 3;15:232. doi: 10.1186/1471-2105-15-232.

15.

Fine-mapping of IgE-associated loci 1q23, 5q31, and 12q13 using 1000 Genomes Project data.

Sharma V, Michel S, Gaertner V, Franke A, Vogelberg C, von Berg A, Bufe A, Heinzmann A, Laub O, Rietschel E, Simma B, Frischer T, Genuneit J, Zeilinger S, Illig T, Schedel M, Potaczek DP, Kabesch M.

Allergy. 2014 Aug;69(8):1077-84. doi: 10.1111/all.12431. Epub 2014 Jun 14.

PMID:
24930997
16.

An integrated epigenetic and transcriptomic analysis reveals distinct tissue-specific patterns of DNA methylation associated with atopic dermatitis.

Rodríguez E, Baurecht H, Wahn AF, Kretschmer A, Hotze M, Zeilinger S, Klopp N, Illig T, Schramm K, Prokisch H, Kühnel B, Gieger C, Harder J, Cifuentes L, Novak N, Weidinger S.

J Invest Dermatol. 2014 Jul;134(7):1873-1883. doi: 10.1038/jid.2014.87. Epub 2014 Feb 13.

17.

Metabolite profiling reveals new insights into the regulation of serum urate in humans.

Albrecht E, Waldenberger M, Krumsiek J, Evans AM, Jeratsch U, Breier M, Adamski J, Koenig W, Zeilinger S, Fuchs C, Klopp N, Theis FJ, Wichmann HE, Suhre K, Illig T, Strauch K, Peters A, Gieger C, Kastenmüller G, Doering A, Meisinger C.

Metabolomics. 2014;10(1):141-151. doi: 10.1007/s11306-013-0565-2. Epub 2013 Jul 20.

18.

Trichoderma-plant-pathogen interactions: advances in genetics of biological control.

Mukherjee M, Mukherjee PK, Horwitz BA, Zachow C, Berg G, Zeilinger S.

Indian J Microbiol. 2012 Dec;52(4):522-9. doi: 10.1007/s12088-012-0308-5. Epub 2012 Sep 29. Review.

19.

Genetic variation in TH17 pathway genes, childhood asthma, and total serum IgE levels.

Schieck M, Michel S, Suttner K, Illig T, Zeilinger S, Franke A, Vogelberg C, von Berg A, Bufe A, Heinzmann A, Laub O, Rietschel E, Simma B, Frischer T, Genuneit J, Kerzel S, Kabesch M.

J Allergy Clin Immunol. 2014 Mar;133(3):888-91. doi: 10.1016/j.jaci.2013.08.048. Epub 2013 Nov 1. No abstract available.

PMID:
24184148
20.

Epigenetics meets metabolomics: an epigenome-wide association study with blood serum metabolic traits.

Petersen AK, Zeilinger S, Kastenmüller G, Römisch-Margl W, Brugger M, Peters A, Meisinger C, Strauch K, Hengstenberg C, Pagel P, Huber F, Mohney RP, Grallert H, Illig T, Adamski J, Waldenberger M, Gieger C, Suhre K.

Hum Mol Genet. 2014 Jan 15;23(2):534-45. doi: 10.1093/hmg/ddt430. Epub 2013 Sep 6.

21.

Different FCER1A polymorphisms influence IgE levels in asthmatics and non-asthmatics.

Potaczek DP, Michel S, Sharma V, Zeilinger S, Vogelberg C, von Berg A, Bufe A, Heinzmann A, Laub O, Rietschel E, Simma B, Frischer T, Genuneit J, Illig T, Kabesch M.

Pediatr Allergy Immunol. 2013 Aug;24(5):441-9. doi: 10.1111/pai.12083. Epub 2013 Jun 3.

PMID:
23725541
22.

A putative terpene cyclase, vir4, is responsible for the biosynthesis of volatile terpene compounds in the biocontrol fungus Trichoderma virens.

Crutcher FK, Parich A, Schuhmacher R, Mukherjee PK, Zeilinger S, Kenerley CM.

Fungal Genet Biol. 2013 Jul;56:67-77. doi: 10.1016/j.fgb.2013.05.003. Epub 2013 May 22.

PMID:
23707931
23.

Tobacco smoking leads to extensive genome-wide changes in DNA methylation.

Zeilinger S, Kühnel B, Klopp N, Baurecht H, Kleinschmidt A, Gieger C, Weidinger S, Lattka E, Adamski J, Peters A, Strauch K, Waldenberger M, Illig T.

PLoS One. 2013 May 17;8(5):e63812. doi: 10.1371/journal.pone.0063812. Print 2013.

24.

The comprehensive peptaibiotics database.

Stoppacher N, Neumann NK, Burgstaller L, Zeilinger S, Degenkolb T, Brückner H, Schuhmacher R.

Chem Biodivers. 2013 May;10(5):734-43. doi: 10.1002/cbdv.201200427.

PMID:
23681723
25.

Comparative analysis of the repertoire of G protein-coupled receptors of three species of the fungal genus Trichoderma.

Gruber S, Omann M, Zeilinger S.

BMC Microbiol. 2013 May 16;13:108. doi: 10.1186/1471-2180-13-108.

26.

Functional analyses of Trichoderma reesei LAE1 reveal conserved and contrasting roles of this regulator.

Karimi-Aghcheh R, Bok JW, Phatale PA, Smith KM, Baker SE, Lichius A, Omann M, Zeilinger S, Seiboth B, Rhee C, Keller NP, Freitag M, Kubicek CP.

G3 (Bethesda). 2013 Feb;3(2):369-78. doi: 10.1534/g3.112.005140. Epub 2013 Feb 1.

27.

Generation of Trichoderma atroviride mutants with constitutively activated G protein signaling by using geneticin resistance as selection marker.

Gruber S, Omann M, Rodrìguez CE, Radebner T, Zeilinger S.

BMC Res Notes. 2012 Nov 17;5:641. doi: 10.1186/1756-0500-5-641.

28.

Umbilical cord PUFA are determined by maternal and child fatty acid desaturase (FADS) genetic variants in the Avon Longitudinal Study of Parents and Children (ALSPAC).

Lattka E, Koletzko B, Zeilinger S, Hibbeln JR, Klopp N, Ring SM, Steer CD.

Br J Nutr. 2013 Apr 14;109(7):1196-210. doi: 10.1017/S0007114512003108. Epub 2012 Aug 9.

29.

CXCR1 and CXCR2 haplotypes synergistically modulate cystic fibrosis lung disease.

Kormann MS, Hector A, Marcos V, Mays LE, Kappler M, Illig T, Klopp N, Zeilinger S, Carevic M, Rieber N, Eickmeier O, Zielen S, Gaggar A, Moepps B, Griese M, Hartl D.

Eur Respir J. 2012 Jun;39(6):1385-90. doi: 10.1183/09031936.00130011. Epub 2011 Nov 16.

30.

The seven-transmembrane receptor Gpr1 governs processes relevant for the antagonistic interaction of Trichoderma atroviride with its host.

Omann MR, Lehner S, Escobar Rodríguez C, Brunner K, Zeilinger S.

Microbiology. 2012 Jan;158(Pt 1):107-18. doi: 10.1099/mic.0.052035-0. Epub 2011 Nov 10.

31.

Trichoderma: the genomics of opportunistic success.

Druzhinina IS, Seidl-Seiboth V, Herrera-Estrella A, Horwitz BA, Kenerley CM, Monte E, Mukherjee PK, Zeilinger S, Grigoriev IV, Kubicek CP.

Nat Rev Microbiol. 2011 Sep 16;9(10):749-59. doi: 10.1038/nrmicro2637. Review. Erratum in: Nat Rev Microbiol. 2011;9(12):896.

PMID:
21921934
32.

Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma.

Kubicek CP, Herrera-Estrella A, Seidl-Seiboth V, Martinez DA, Druzhinina IS, Thon M, Zeilinger S, Casas-Flores S, Horwitz BA, Mukherjee PK, Mukherjee M, Kredics L, Alcaraz LD, Aerts A, Antal Z, Atanasova L, Cervantes-Badillo MG, Challacombe J, Chertkov O, McCluskey K, Coulpier F, Deshpande N, von Döhren H, Ebbole DJ, Esquivel-Naranjo EU, Fekete E, Flipphi M, Glaser F, Gómez-Rodríguez EY, Gruber S, Han C, Henrissat B, Hermosa R, Hernández-Oñate M, Karaffa L, Kosti I, Le Crom S, Lindquist E, Lucas S, Lübeck M, Lübeck PS, Margeot A, Metz B, Misra M, Nevalainen H, Omann M, Packer N, Perrone G, Uresti-Rivera EE, Salamov A, Schmoll M, Seiboth B, Shapiro H, Sukno S, Tamayo-Ramos JA, Tisch D, Wiest A, Wilkinson HH, Zhang M, Coutinho PM, Kenerley CM, Monte E, Baker SE, Grigoriev IV.

Genome Biol. 2011;12(4):R40. doi: 10.1186/gb-2011-12-4-r40. Epub 2011 Apr 18.

33.
34.

Identification and profiling of volatile metabolites of the biocontrol fungus Trichoderma atroviride by HS-SPME-GC-MS.

Stoppacher N, Kluger B, Zeilinger S, Krska R, Schuhmacher R.

J Microbiol Methods. 2010 May;81(2):187-93. doi: 10.1016/j.mimet.2010.03.011. Epub 2010 Mar 16.

PMID:
20302890
35.

How a mycoparasite employs g-protein signaling: using the example of trichoderma.

Omann M, Zeilinger S.

J Signal Transduct. 2010;2010:123126. doi: 10.1155/2010/123126. Epub 2010 Sep 8.

36.

Transcriptomic response of the mycoparasitic fungus Trichoderma atroviride to the presence of a fungal prey.

Seidl V, Song L, Lindquist E, Gruber S, Koptchinskiy A, Zeilinger S, Schmoll M, Martínez P, Sun J, Grigoriev I, Herrera-Estrella A, Baker SE, Kubicek CP.

BMC Genomics. 2009 Nov 30;10:567. doi: 10.1186/1471-2164-10-567.

37.

The effect of BDNF gene variants on asthma in German children.

Zeilinger S, Pinto LA, Nockher WA, Depner M, Klopp N, Illig T, von Mutius E, Renz H, Kabesch M.

Allergy. 2009 Dec;64(12):1790-4. doi: 10.1111/j.1398-9995.2009.02131.x.

PMID:
19895626
38.

Trichoderma G protein-coupled receptors: functional characterisation of a cAMP receptor-like protein from Trichoderma atroviride.

Brunner K, Omann M, Pucher ME, Delic M, Lehner SM, Domnanich P, Kratochwill K, Druzhinina I, Denk D, Zeilinger S.

Curr Genet. 2008 Dec;54(6):283-99. doi: 10.1007/s00294-008-0217-7. Epub 2008 Oct 3.

39.

Characterisation of the peptaibiome of the biocontrol fungus Trichoderma atroviride by liquid chromatography/tandem mass spectrometry.

Stoppacher N, Zeilinger S, Omann M, Lassahn PG, Roitinger A, Krska R, Schuhmacher R.

Rapid Commun Mass Spectrom. 2008 Jun;22(12):1889-98. doi: 10.1002/rcm.3568.

PMID:
18470867
40.

Profiling of trichorzianines in culture samples of Trichoderma atroviride by liquid chromatography/tandem mass spectrometry.

Stoppacher N, Reithner B, Omann M, Zeilinger S, Krska R, Schuhmacher R.

Rapid Commun Mass Spectrom. 2007;21(24):3963-70.

PMID:
18008385
41.

Signaling via the Trichoderma atroviride mitogen-activated protein kinase Tmk 1 differentially affects mycoparasitism and plant protection.

Reithner B, Schuhmacher R, Stoppacher N, Pucher M, Brunner K, Zeilinger S.

Fungal Genet Biol. 2007 Nov;44(11):1123-33. Epub 2007 Apr 12.

42.
43.

Transcriptional regulation of xyn1, encoding xylanase I, in Hypocrea jecorina.

Rauscher R, Würleitner E, Wacenovsky C, Aro N, Stricker AR, Zeilinger S, Kubicek CP, Penttilä M, Mach RL.

Eukaryot Cell. 2006 Mar;5(3):447-56.

44.

Improvement of the fungal biocontrol agent Trichoderma atroviride to enhance both antagonism and induction of plant systemic disease resistance.

Brunner K, Zeilinger S, Ciliento R, Woo SL, Lorito M, Kubicek CP, Mach RL.

Appl Environ Microbiol. 2005 Jul;71(7):3959-65.

45.

The G protein alpha subunit Tga1 of Trichoderma atroviride is involved in chitinase formation and differential production of antifungal metabolites.

Reithner B, Brunner K, Schuhmacher R, Peissl I, Seidl V, Krska R, Zeilinger S.

Fungal Genet Biol. 2005 Sep;42(9):749-60.

PMID:
15964222
46.

Signal transduction by Tga3, a novel G protein alpha subunit of Trichoderma atroviride.

Zeilinger S, Reithner B, Scala V, Peissl I, Lorito M, Mach RL.

Appl Environ Microbiol. 2005 Mar;71(3):1591-7.

47.

Cloning of genes expressed early during cellulase induction in Hypocrea jecorina by a rapid subtraction hybridization approach.

Schmoll M, Zeilinger S, Mach RL, Kubicek CP.

Fungal Genet Biol. 2004 Sep;41(9):877-87.

PMID:
15288024
48.

In vivo study of trichoderma-pathogen-plant interactions, using constitutive and inducible green fluorescent protein reporter systems.

Lu Z, Tombolini R, Woo S, Zeilinger S, Lorito M, Jansson JK.

Appl Environ Microbiol. 2004 May;70(5):3073-81.

49.

Gene disruption in Trichoderma atroviride via Agrobacterium-mediated transformation.

Zeilinger S.

Curr Genet. 2004 Feb;45(1):54-60. Epub 2003 Oct 29.

PMID:
14586554
50.

Nucleosome transactions on the Hypocrea jecorina (Trichoderma reesei) cellulase promoter cbh2 associated with cellulase induction.

Zeilinger S, Schmoll M, Pail M, Mach RL, Kubicek CP.

Mol Genet Genomics. 2003 Oct;270(1):46-55. Epub 2003 Aug 2.

PMID:
12905071

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