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Amylopectin chain length dynamics and activity signatures of key carbon metabolic enzymes highlight early maturation as culprit for yield reduction of barley endosperm starch after heat stress.

Cuesta-Seijo JA, De Porcellinis AJ, Valente AH, Striebeck A, Voss C, Marri L, Hansson A, Jansson AM, Dinesen MH, Fangel JU, Harholt J, Popovic M, Thieme M, Hochmuth A, Zeeman SC, Mikkelsen TN, Jørgensen RB, Roitsch TG, Møller BL, Braumann I.

Plant Cell Physiol. 2019 Aug 9. pii: pcz155. doi: 10.1093/pcp/pcz155. [Epub ahead of print]


LIKE SEX4 1 Acts as a β-Amylase-Binding Scaffold on Starch Granules during Starch Degradation.

Schreier TB, Umhang M, Lee SK, Lue WL, Shen Z, Silver D, Graf A, Müller A, Eicke S, Stadler-Waibel M, Seung D, Bischof S, Briggs SP, Kötting O, Moorhead GBG, Chen J, Zeeman SC.

Plant Cell. 2019 Sep;31(9):2169-2186. doi: 10.1105/tpc.19.00089. Epub 2019 Jul 2.


The evolution of functional complexity within the β-amylase gene family in land plants.

Thalmann M, Coiro M, Meier T, Wicker T, Zeeman SC, Santelia D.

BMC Evol Biol. 2019 Feb 28;19(1):66. doi: 10.1186/s12862-019-1395-2.


Modification of Cassava Root Starch Phosphorylation Enhances Starch Functional Properties.

Wang W, Hostettler CE, Damberger FF, Kossmann J, Lloyd JR, Zeeman SC.

Front Plant Sci. 2018 Oct 30;9:1562. doi: 10.3389/fpls.2018.01562. eCollection 2018.


Changes in resource partitioning between and within organs support growth adjustment to neighbor proximity in Brassicaceae seedlings.

de Wit M, George GM, Ince YÇ, Dankwa-Egli B, Hersch M, Zeeman SC, Fankhauser C.

Proc Natl Acad Sci U S A. 2018 Oct 16;115(42):E9953-E9961. doi: 10.1073/pnas.1806084115. Epub 2018 Oct 1.


Accelerated ex situ breeding of GBSS- and PTST1-edited cassava for modified starch.

Bull SE, Seung D, Chanez C, Mehta D, Kuon JE, Truernit E, Hochmuth A, Zurkirchen I, Zeeman SC, Gruissem W, Vanderschuren H.

Sci Adv. 2018 Sep 5;4(9):eaat6086. doi: 10.1126/sciadv.aat6086. eCollection 2018 Sep.


Repression of Sex4 and Like Sex Four2 Orthologs in Potato Increases Tuber Starch Bound Phosphate With Concomitant Alterations in Starch Physical Properties.

Samodien E, Jewell JF, Loedolff B, Oberlander K, George GM, Zeeman SC, Damberger FF, van der Vyver C, Kossmann J, Lloyd JR.

Front Plant Sci. 2018 Jul 23;9:1044. doi: 10.3389/fpls.2018.01044. eCollection 2018.


Design and Use of a Digitally Controlled Device for Accurate, Multiplexed Gas Exchange Measurements of the Complete Foliar Parts of Plants.

George GM, Kölling K, Kuenzli R, Hirsch-Hoffmann M, Flütsch P, Zeeman SC.

Methods Mol Biol. 2018;1770:45-68. doi: 10.1007/978-1-4939-7786-4_3.


Plastidial NAD-Dependent Malate Dehydrogenase: A Moonlighting Protein Involved in Early Chloroplast Development through Its Interaction with an FtsH12-FtsHi Protease Complex.

Schreier TB, Cléry A, Schläfli M, Galbier F, Stadler M, Demarsy E, Albertini D, Maier BA, Kessler F, Hörtensteiner S, Zeeman SC, Kötting O.

Plant Cell. 2018 Aug;30(8):1745-1769. doi: 10.1105/tpc.18.00121. Epub 2018 Jun 22.


Two Plastidial Coiled-Coil Proteins Are Essential for Normal Starch Granule Initiation in Arabidopsis.

Seung D, Schreier TB, Bürgy L, Eicke S, Zeeman SC.

Plant Cell. 2018 Jul;30(7):1523-1542. doi: 10.1105/tpc.18.00219. Epub 2018 Jun 4.


Distinct Functions of STARCH SYNTHASE 4 Domains in Starch Granule Formation.

Lu KJ, Pfister B, Jenny C, Eicke S, Zeeman SC.

Plant Physiol. 2018 Jan;176(1):566-581. doi: 10.1104/pp.17.01008. Epub 2017 Nov 13.


OCTOPUS-LIKE 2, a novel player in Arabidopsis root and vascular development, reveals a key role for OCTOPUS family genes in root metaphloem sieve tube differentiation.

Ruiz Sola MA, Coiro M, Crivelli S, Zeeman SC, Schmidt Kjølner Hansen S, Truernit E.

New Phytol. 2017 Dec;216(4):1191-1204. doi: 10.1111/nph.14751. Epub 2017 Sep 6.


Alpha-Glucan, Water Dikinase 1 Affects Starch Metabolism and Storage Root Growth in Cassava (Manihot esculenta Crantz).

Zhou W, He S, Naconsie M, Ma Q, Zeeman SC, Gruissem W, Zhang P.

Sci Rep. 2017 Aug 29;7(1):9863. doi: 10.1038/s41598-017-10594-6.


Simultaneous silencing of isoamylases ISA1, ISA2 and ISA3 by multi-target RNAi in potato tubers leads to decreased starch content and an early sprouting phenotype.

Ferreira SJ, Senning M, Fischer-Stettler M, Streb S, Ast M, Neuhaus HE, Zeeman SC, Sonnewald S, Sonnewald U.

PLoS One. 2017 Jul 14;12(7):e0181444. doi: 10.1371/journal.pone.0181444. eCollection 2017.


Homologs of PROTEIN TARGETING TO STARCH Control Starch Granule Initiation in Arabidopsis Leaves.

Seung D, Boudet J, Monroe J, Schreier TB, David LC, Abt M, Lu KJ, Zanella M, Zeeman SC.

Plant Cell. 2017 Jul;29(7):1657-1677. doi: 10.1105/tpc.17.00222. Epub 2017 Jul 6.


Leaf Starch Turnover Occurs in Long Days and in Falling Light at the End of the Day.

Fernandez O, Ishihara H, George GM, Mengin V, Flis A, Sumner D, Arrivault S, Feil R, Lunn JE, Zeeman SC, Smith AM, Stitt M.

Plant Physiol. 2017 Aug;174(4):2199-2212. doi: 10.1104/pp.17.00601. Epub 2017 Jun 29.


Recreating the synthesis of starch granules in yeast.

Pfister B, Sánchez-Ferrer A, Diaz A, Lu K, Otto C, Holler M, Shaik FR, Meier F, Mezzenga R, Zeeman SC.

Elife. 2016 Nov 22;5. pii: e15552. doi: 10.7554/eLife.15552.


Degradation of Glucan Primers in the Absence of Starch Synthase 4 Disrupts Starch Granule Initiation in Arabidopsis.

Seung D, Lu KJ, Stettler M, Streb S, Zeeman SC.

J Biol Chem. 2016 Sep 23;291(39):20718-28. doi: 10.1074/jbc.M116.730648. Epub 2016 Jul 25.


Regulation of Leaf Starch Degradation by Abscisic Acid Is Important for Osmotic Stress Tolerance in Plants.

Thalmann M, Pazmino D, Seung D, Horrer D, Nigro A, Meier T, Kölling K, Pfeifhofer HW, Zeeman SC, Santelia D.

Plant Cell. 2016 Aug;28(8):1860-78. doi: 10.1105/tpc.16.00143. Epub 2016 Jul 19.


The Starch Granule-Associated Protein EARLY STARVATION1 Is Required for the Control of Starch Degradation in Arabidopsis thaliana Leaves.

Feike D, Seung D, Graf A, Bischof S, Ellick T, Coiro M, Soyk S, Eicke S, Mettler-Altmann T, Lu KJ, Trick M, Zeeman SC, Smith AM.

Plant Cell. 2016 Jun;28(6):1472-89. doi: 10.1105/tpc.16.00011. Epub 2016 May 20.


Formation of starch in plant cells.

Pfister B, Zeeman SC.

Cell Mol Life Sci. 2016 Jul;73(14):2781-807. doi: 10.1007/s00018-016-2250-x. Epub 2016 May 11. Review.


Trehalose 6-phosphate coordinates organic and amino acid metabolism with carbon availability.

Figueroa CM, Feil R, Ishihara H, Watanabe M, Kölling K, Krause U, Höhne M, Encke B, Plaxton WC, Zeeman SC, Li Z, Schulze WX, Hoefgen R, Stitt M, Lunn JE.

Plant J. 2016 Feb;85(3):410-23. doi: 10.1111/tpj.13114.


A whole-plant chamber system for parallel gas exchange measurements of Arabidopsis and other herbaceous species.

Kölling K, George GM, Künzli R, Flütsch P, Zeeman SC.

Plant Methods. 2015 Oct 16;11:48. doi: 10.1186/s13007-015-0089-z. eCollection 2015.


Mathematical Modeling of the Dynamics of Shoot-Root Interactions and Resource Partitioning in Plant Growth.

Feller C, Favre P, Janka A, Zeeman SC, Gabriel JP, Reinhardt D.

PLoS One. 2015 Jul 8;10(7):e0127905. doi: 10.1371/journal.pone.0127905. eCollection 2015.


Editorial overview: Physiology and metabolism: Plant metabolism: globules to global, modules to models.

Smith SM, Zeeman SC.

Curr Opin Plant Biol. 2015 Jun;25:v-viii. doi: 10.1016/j.pbi.2015.06.004. Epub 2015 Jun 26. No abstract available.


PROTEIN TARGETING TO STARCH is required for localising GRANULE-BOUND STARCH SYNTHASE to starch granules and for normal amylose synthesis in Arabidopsis.

Seung D, Soyk S, Coiro M, Maier BA, Eicke S, Zeeman SC.

PLoS Biol. 2015 Feb 24;13(2):e1002080. doi: 10.1371/journal.pbio.1002080. eCollection 2015 Feb.


Carbon partitioning in Arabidopsis thaliana is a dynamic process controlled by the plants metabolic status and its circadian clock.

Kölling K, Thalmann M, Müller A, Jenny C, Zeeman SC.

Plant Cell Environ. 2015 Oct;38(10):1965-79. doi: 10.1111/pce.12512. Epub 2015 Apr 9.


Genetic Evidence That Chain Length and Branch Point Distributions Are Linked Determinants of Starch Granule Formation in Arabidopsis.

Pfister B, Lu KJ, Eicke S, Feil R, Lunn JE, Streb S, Zeeman SC.

Plant Physiol. 2014 Aug;165(4):1457-1474. Epub 2014 Jun 25.


The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.

Soyk S, Simková K, Zürcher E, Luginbühl L, Brand LH, Vaughan CK, Wanke D, Zeeman SC.

Plant Cell. 2014 Apr;26(4):1746-1763. Epub 2014 Apr 18.


Plastidial NAD-dependent malate dehydrogenase is critical for embryo development and heterotrophic metabolism in Arabidopsis.

Beeler S, Liu HC, Stadler M, Schreier T, Eicke S, Lue WL, Truernit E, Zeeman SC, Chen J, Kötting O.

Plant Physiol. 2014 Mar;164(3):1175-90. doi: 10.1104/pp.113.233866. Epub 2014 Jan 22.


ABC1K1/PGR6 kinase: a regulatory link between photosynthetic activity and chloroplast metabolism.

Martinis J, Glauser G, Valimareanu S, Stettler M, Zeeman SC, Yamamoto H, Shikanai T, Kessler F.

Plant J. 2014 Jan;77(2):269-83. doi: 10.1111/tpj.12385. Epub 2013 Dec 28.


A device for single leaf labelling with CO2 isotopes to study carbon allocation and partitioning in Arabidopsis thaliana.

Kölling K, Müller A, Flütsch P, Zeeman SC.

Plant Methods. 2013 Nov 19;9(1):45. doi: 10.1186/1746-4811-9-45.


The heteromultimeric debranching enzyme involved in starch synthesis in Arabidopsis requires both isoamylase1 and isoamylase2 subunits for complex stability and activity.

Sundberg M, Pfister B, Fulton D, Bischof S, Delatte T, Eicke S, Stettler M, Smith SM, Streb S, Zeeman SC.

PLoS One. 2013 Sep 30;8(9):e75223. doi: 10.1371/journal.pone.0075223. eCollection 2013.


Nighttime sugar starvation orchestrates gibberellin biosynthesis and plant growth in Arabidopsis.

Paparelli E, Parlanti S, Gonzali S, Novi G, Mariotti L, Ceccarelli N, van Dongen JT, Kölling K, Zeeman SC, Perata P.

Plant Cell. 2013 Oct;25(10):3760-9. doi: 10.1105/tpc.113.115519. Epub 2013 Oct 4.


Arabidopsis thaliana AMY3 is a unique redox-regulated chloroplastic α-amylase.

Seung D, Thalmann M, Sparla F, Abou Hachem M, Lee SK, Issakidis-Bourguet E, Svensson B, Zeeman SC, Santelia D.

J Biol Chem. 2013 Nov 22;288(47):33620-33. doi: 10.1074/jbc.M113.514794. Epub 2013 Oct 2.


Starch synthase 4 is essential for coordination of starch granule formation with chloroplast division during Arabidopsis leaf expansion.

Crumpton-Taylor M, Pike M, Lu KJ, Hylton CM, Feil R, Eicke S, Lunn JE, Zeeman SC, Smith AM.

New Phytol. 2013 Dec;200(4):1064-75. doi: 10.1111/nph.12455. Epub 2013 Aug 19.


Cecropia peltata accumulates starch or soluble glycogen by differentially regulating starch biosynthetic genes.

Bischof S, Umhang M, Eicke S, Streb S, Qi W, Zeeman SC.

Plant Cell. 2013 Apr;25(4):1400-15. doi: 10.1105/tpc.113.109793. Epub 2013 Apr 30.


Starch metabolism in Arabidopsis.

Streb S, Zeeman SC.

Arabidopsis Book. 2012;10:e0160. doi: 10.1199/tab.0160. Epub 2012 Sep 24.


The simultaneous abolition of three starch hydrolases blocks transient starch breakdown in Arabidopsis.

Streb S, Eicke S, Zeeman SC.

J Biol Chem. 2012 Dec 7;287(50):41745-56. doi: 10.1074/jbc.M112.395244. Epub 2012 Sep 27.


Comprehensive survey of redox sensitive starch metabolising enzymes in Arabidopsis thaliana.

Glaring MA, Skryhan K, Kötting O, Zeeman SC, Blennow A.

Plant Physiol Biochem. 2012 Sep;58:89-97. doi: 10.1016/j.plaphy.2012.06.017. Epub 2012 Jun 28.


Starch turnover: pathways, regulation and role in growth.

Stitt M, Zeeman SC.

Curr Opin Plant Biol. 2012 Jun;15(3):282-92. doi: 10.1016/j.pbi.2012.03.016. Epub 2012 Apr 26. Review.


The phosphoglucan phosphatase like sex Four2 dephosphorylates starch at the C3-position in Arabidopsis.

Santelia D, Kötting O, Seung D, Schubert M, Thalmann M, Bischof S, Meekins DA, Lutz A, Patron N, Gentry MS, Allain FH, Zeeman SC.

Plant Cell. 2011 Nov;23(11):4096-111. doi: 10.1105/tpc.111.092155. Epub 2011 Nov 18.


Mutagenesis of cysteine 81 prevents dimerization of the APS1 subunit of ADP-glucose pyrophosphorylase and alters diurnal starch turnover in Arabidopsis thaliana leaves.

Hädrich N, Hendriks JH, Kötting O, Arrivault S, Feil R, Zeeman SC, Gibon Y, Schulze WX, Stitt M, Lunn JE.

Plant J. 2012 Apr;70(2):231-42. doi: 10.1111/j.1365-313X.2011.04860.x. Epub 2011 Dec 28.


Analysis of starch metabolism in chloroplasts.

Hostettler C, Kölling K, Santelia D, Streb S, Kötting O, Zeeman SC.

Methods Mol Biol. 2011;775:387-410. doi: 10.1007/978-1-61779-237-3_21.


β-amylase-like proteins function as transcription factors in Arabidopsis, controlling shoot growth and development.

Reinhold H, Soyk S, Simková K, Hostettler C, Marafino J, Mainiero S, Vaughan CK, Monroe JD, Zeeman SC.

Plant Cell. 2011 Apr;23(4):1391-403. doi: 10.1105/tpc.110.081950. Epub 2011 Apr 12.


Starch-binding domains in the CBM45 family--low-affinity domains from glucan, water dikinase and α-amylase involved in plastidial starch metabolism.

Glaring MA, Baumann MJ, Abou Hachem M, Nakai H, Nakai N, Santelia D, Sigurskjold BW, Zeeman SC, Blennow A, Svensson B.

FEBS J. 2011 Apr;278(7):1175-85. doi: 10.1111/j.1742-4658.2011.08043.x. Epub 2011 Mar 1.


Progress in Arabidopsis starch research and potential biotechnological applications.

Santelia D, Zeeman SC.

Curr Opin Biotechnol. 2011 Apr;22(2):271-80. doi: 10.1016/j.copbio.2010.11.014. Epub 2010 Dec 23. Review.


Callose synthase GSL7 is necessary for normal phloem transport and inflorescence growth in Arabidopsis.

Barratt DH, Kölling K, Graf A, Pike M, Calder G, Findlay K, Zeeman SC, Smith AM.

Plant Physiol. 2011 Jan;155(1):328-41. doi: 10.1104/pp.110.166330. Epub 2010 Nov 22.

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