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Resistance and resilience to experimental gingivitis: a systematic scoping review.

Zemouri C, Jakubovics NS, Crielaard W, Zaura E, Dodds M, Schelkle B, Loos BG.

BMC Oral Health. 2019 Sep 11;19(1):212. doi: 10.1186/s12903-019-0889-z.


Applications of the oral microbiome in personalized dentistry.

Belibasakis GN, Bostanci N, Marsh PD, Zaura E.

Arch Oral Biol. 2019 Aug;104:7-12. doi: 10.1016/j.archoralbio.2019.05.023. Epub 2019 May 24. Review.


Critical Appraisal of Oral Pre- and Probiotics for Caries Prevention and Care.

Zaura E, Twetman S.

Caries Res. 2019;53(5):514-526. doi: 10.1159/000499037. Epub 2019 Apr 4. Review.


Qualitative and quantitative differences in the subgingival microbiome of the restored and unrestored teeth.

Rademacher SWH, Zaura E, Kleverlaan CJ, Buijs MJ, Crielaard W, Loos BG, Laine ML.

J Periodontal Res. 2019 Aug;54(4):405-412. doi: 10.1111/jre.12642. Epub 2019 Feb 8.


Microcosm biofilms cultured from different oral niches in periodontitis patients.

Cieplik F, Zaura E, Brandt BW, Buijs MJ, Buchalla W, Crielaard W, Laine ML, Deng DM, Exterkate RAM.

J Oral Microbiol. 2018 Nov 27;11(1):1551596. doi: 10.1080/20022727.2018.1551596. eCollection 2019.


The microbiome of pancreatic cancer: from molecular diagnostics to new therapeutic approaches to overcome chemoresistance caused by metabolic inactivation of gemcitabine.

Choy ATF, Carnevale I, Coppola S, Meijer LL, Kazemier G, Zaura E, Deng D, Giovannetti E.

Expert Rev Mol Diagn. 2018 Dec;18(12):1005-1009. doi: 10.1080/14737159.2018.1544495. Epub 2018 Nov 9.


Subgingival microbiome of rheumatoid arthritis patients in relation to their disease status and periodontal health.

Beyer K, Zaura E, Brandt BW, Buijs MJ, Brun JG, Crielaard W, Bolstad AI.

PLoS One. 2018 Sep 19;13(9):e0202278. doi: 10.1371/journal.pone.0202278. eCollection 2018.


Components in Lentinus edodes mushroom with anti-biofilm activity directed against bacteria involved in caries and gingivitis.

Papetti A, Signoretto C, Spratt DA, Pratten J, Lingström P, Zaura E, Ofek I, Wilson M, Pruzzo C, Gazzani G.

Food Funct. 2018 Jun 20;9(6):3489-3499. doi: 10.1039/c7fo01727h.


Meeting report: The 12th European oral microbiology workshop (EOMW) in Stockholm, Sweden.

Belibasakis GN, Curtis MA, Hajishengallis G, Zaura E.

Virulence. 2018 Jan 1;9(1):64-69. doi: 10.1080/21505594.2017.1376147. Epub 2017 Nov 10. No abstract available.


Effect of erythritol on microbial ecology of in vitro gingivitis biofilms.

Janus MM, Volgenant CMC, Brandt BW, Buijs MJ, Keijser BJF, Crielaard W, Zaura E, Krom BP.

J Oral Microbiol. 2017 Jun 22;9(1):1337477. doi: 10.1080/20002297.2017.1337477. eCollection 2017.


A reproducible microcosm biofilm model of subgingival microbial communities.

Fernandez Y Mostajo M, Exterkate RAM, Buijs MJ, Beertsen W, van der Weijden GA, Zaura E, Crielaard W.

J Periodontal Res. 2017 Dec;52(6):1021-1031. doi: 10.1111/jre.12473. Epub 2017 Jul 14.


Second Era of OMICS in Caries Research: Moving Past the Phase of Disillusionment.

Nascimento MM, Zaura E, Mira A, Takahashi N, Ten Cate JM.

J Dent Res. 2017 Jul;96(7):733-740. doi: 10.1177/0022034517701902. Epub 2017 Apr 6. Review.


Caries Incidence in a Healthy Young Adult Population in Relation to Diet.

Rosier BT, van Loveren C, Zaura E, Loos BG, Keijser BJF, Crielaard W, Lagerweij MD.

JDR Clin Trans Res. 2017 Apr;2(2):142-150. doi: 10.1177/2380084416683340. Epub 2016 Dec 21.


Dental biofilm: ecological interactions in health and disease.

Marsh PD, Zaura E.

J Clin Periodontol. 2017 Mar;44 Suppl 18:S12-S22. doi: 10.1111/jcpe.12679. Review.


Role of microbial biofilms in the maintenance of oral health and in the development of dental caries and periodontal diseases. Consensus report of group 1 of the Joint EFP/ORCA workshop on the boundaries between caries and periodontal disease.

Sanz M, Beighton D, Curtis MA, Cury JA, Dige I, Dommisch H, Ellwood R, Giacaman RA, Herrera D, Herzberg MC, Könönen E, Marsh PD, Meyle J, Mira A, Molina A, Mombelli A, Quirynen M, Reynolds EC, Shapira L, Zaura E.

J Clin Periodontol. 2017 Mar;44 Suppl 18:S5-S11. doi: 10.1111/jcpe.12682.


Red fluorescence of dental plaque in children -A cross-sectional study.

Volgenant CM, Zaura E, Brandt BW, Buijs MJ, Tellez M, Malik G, Ismail AI, Ten Cate JM, van der Veen MH.

J Dent. 2017 Mar;58:40-47. doi: 10.1016/j.jdent.2017.01.007. Epub 2017 Jan 20.


On the ecosystemic network of saliva in healthy young adults.

Zaura E, Brandt BW, Prodan A, Teixeira de Mattos MJ, Imangaliyev S, Kool J, Buijs MJ, Jagers FL, Hennequin-Hoenderdos NL, Slot DE, Nicu EA, Lagerweij MD, Janus MM, Fernandez-Gutierrez MM, Levin E, Krom BP, Brand HS, Veerman EC, Kleerebezem M, Loos BG, van der Weijden GA, Crielaard W, Keijser BJ.

ISME J. 2017 May;11(5):1218-1231. doi: 10.1038/ismej.2016.199. Epub 2017 Jan 10.


The oral microbiome - an update for oral healthcare professionals.

Kilian M, Chapple IL, Hannig M, Marsh PD, Meuric V, Pedersen AM, Tonetti MS, Wade WG, Zaura E.

Br Dent J. 2016 Nov 18;221(10):657-666. doi: 10.1038/sj.bdj.2016.865.


The mycobiome of root canal infections is correlated to the bacteriome.

Persoon IF, Buijs MJ, Özok AR, Crielaard W, Krom BP, Zaura E, Brandt BW.

Clin Oral Investig. 2017 Jun;21(5):1871-1881. doi: 10.1007/s00784-016-1980-3. Epub 2016 Oct 22.


Changes in the oral ecosystem induced by the use of 8% arginine toothpaste.

Koopman JE, Hoogenkamp MA, Buijs MJ, Brandt BW, Keijser BJ, Crielaard W, Ten Cate JM, Zaura E.

Arch Oral Biol. 2017 Jan;73:79-87. doi: 10.1016/j.archoralbio.2016.09.008. Epub 2016 Sep 26.


A novel compound to maintain a healthy oral plaque ecology in vitro.

Janus MM, Crielaard W, Zaura E, Keijser BJ, Brandt BW, Krom BP.

J Oral Microbiol. 2016 Jul 29;8:32513. doi: 10.3402/jom.v8.32513. eCollection 2016.


Effect of mouthwashes on the composition and metabolic activity of oral biofilms grown in vitro.

Fernandez Y Mostajo M, Exterkate RAM, Buijs MJ, Crielaard W, Zaura E.

Clin Oral Investig. 2017 May;21(4):1221-1230. doi: 10.1007/s00784-016-1876-2. Epub 2016 Jun 23.


Corrigendum: Intrinsic challenges in ancient microbiome reconstruction using 16S rRNA gene amplification.

Ziesemer KA, Mann AE, Sankaranarayanan K, Schroeder H, Ozga AT, Brandt BW, Zaura E, Waters-Rist A, Hoogland M, Salazar-García DC, Aldenderfer M, Speller C, Hendy J, Weston DA, MacDonald SJ, Thomas GH, Collins MJ, Lewis CM, Hofman C, Warinner C.

Sci Rep. 2016 Jun 2;6:27163. doi: 10.1038/srep27163. No abstract available.


Nitrate and the Origin of Saliva Influence Composition and Short Chain Fatty Acid Production of Oral Microcosms.

Koopman JE, Buijs MJ, Brandt BW, Keijser BJ, Crielaard W, Zaura E.

Microb Ecol. 2016 Aug;72(2):479-92. doi: 10.1007/s00248-016-0775-z. Epub 2016 May 7.


The microbiome associated with equine periodontitis and oral health.

Kennedy R, Lappin DF, Dixon PM, Buijs MJ, Zaura E, Crielaard W, O'Donnell L, Bennett D, Brandt BW, Riggio MP.

Vet Res. 2016 Apr 14;47:49. doi: 10.1186/s13567-016-0333-1.


Red fluorescent biofilm: the thick, the old, and the cariogenic.

Volgenant CM, Hoogenkamp MA, Buijs MJ, Zaura E, Ten Cate JM, van der Veen MH.

J Oral Microbiol. 2016 Apr 7;8:30346. doi: 10.3402/jom.v8.30346. eCollection 2016.


Microbial profiles at baseline and not the use of antibiotics determine the clinical outcome of the treatment of chronic periodontitis.

Bizzarro S, Laine ML, Buijs MJ, Brandt BW, Crielaard W, Loos BG, Zaura E.

Sci Rep. 2016 Feb 1;6:20205. doi: 10.1038/srep20205.


Intrinsic challenges in ancient microbiome reconstruction using 16S rRNA gene amplification.

Ziesemer KA, Mann AE, Sankaranarayanan K, Schroeder H, Ozga AT, Brandt BW, Zaura E, Waters-Rist A, Hoogland M, Salazar-García DC, Aldenderfer M, Speller C, Hendy J, Weston DA, MacDonald SJ, Thomas GH, Collins MJ, Lewis CM, Hofman C, Warinner C.

Sci Rep. 2015 Nov 13;5:16498. doi: 10.1038/srep16498. Erratum in: Sci Rep. 2016 Jun 02;6:27163.


Same Exposure but Two Radically Different Responses to Antibiotics: Resilience of the Salivary Microbiome versus Long-Term Microbial Shifts in Feces.

Zaura E, Brandt BW, Teixeira de Mattos MJ, Buijs MJ, Caspers MP, Rashid MU, Weintraub A, Nord CE, Savell A, Hu Y, Coates AR, Hubank M, Spratt DA, Wilson M, Keijser BJ, Crielaard W.

MBio. 2015 Nov 10;6(6):e01693-15. doi: 10.1128/mBio.01693-15.


The Oral Microbiome of Denture Wearers Is Influenced by Levels of Natural Dentition.

O'Donnell LE, Robertson D, Nile CJ, Cross LJ, Riggio M, Sherriff A, Bradshaw D, Lambert M, Malcolm J, Buijs MJ, Zaura E, Crielaard W, Brandt BW, Ramage G.

PLoS One. 2015 Sep 14;10(9):e0137717. doi: 10.1371/journal.pone.0137717. eCollection 2015.


metaModules identifies key functional subnetworks in microbiome-related disease.

May A, Brandt BW, El-Kebir M, Klau GW, Zaura E, Crielaard W, Heringa J, Abeln S.

Bioinformatics. 2016 Jun 1;32(11):1678-85. doi: 10.1093/bioinformatics/btv526. Epub 2015 Sep 5.


The Effect of Fixed Orthodontic Appliances and Fluoride Mouthwash on the Oral Microbiome of Adolescents - A Randomized Controlled Clinical Trial.

Koopman JE, van der Kaaij NC, Buijs MJ, Elyassi Y, van der Veen MH, Crielaard W, Ten Cate JM, Zaura E.

PLoS One. 2015 Sep 2;10(9):e0137318. doi: 10.1371/journal.pone.0137318. eCollection 2015.


Editorial: the oral microbiome in an ecological perspective.

Zaura E, Mira A.

Front Cell Infect Microbiol. 2015 Apr 29;5:39. doi: 10.3389/fcimb.2015.00039. eCollection 2015. No abstract available.


Determining the Long-term Effect of Antibiotic Administration on the Human Normal Intestinal Microbiota Using Culture and Pyrosequencing Methods.

Rashid MU, Zaura E, Buijs MJ, Keijser BJ, Crielaard W, Nord CE, Weintraub A.

Clin Infect Dis. 2015 May 15;60 Suppl 2:S77-84. doi: 10.1093/cid/civ137.


Towards understanding oral health.

Zaura E, ten Cate JM.

Caries Res. 2015;49 Suppl 1:55-61. doi: 10.1159/000377733. Epub 2015 Apr 13. Review.


Stability and resilience of oral microcosms toward acidification and Candida outgrowth by arginine supplementation.

Koopman JE, Röling WF, Buijs MJ, Sissons CH, ten Cate JM, Keijser BJ, Crielaard W, Zaura E.

Microb Ecol. 2015 Feb;69(2):422-33. doi: 10.1007/s00248-014-0535-x. Epub 2014 Nov 30.


The effect of propidium monoazide treatment on the measured bacterial composition of clinical samples after the use of a mouthwash.

Exterkate RA, Zaura E, Brandt BW, Buijs MJ, Koopman JE, Crielaard W, Ten Cate JM.

Clin Oral Investig. 2015 May;19(4):813-22. doi: 10.1007/s00784-014-1297-z. Epub 2014 Aug 10.


Effect of an oxygenating agent on oral bacteria in vitro and on dental plaque composition in healthy young adults.

Fernandez y Mostajo M, van der Reijden WA, Buijs MJ, Beertsen W, Van der Weijden F, Crielaard W, Zaura E.

Front Cell Infect Microbiol. 2014 Jul 23;4:95. doi: 10.3389/fcimb.2014.00095. eCollection 2014.


Historical and contemporary hypotheses on the development of oral diseases: are we there yet?

Rosier BT, De Jager M, Zaura E, Krom BP.

Front Cell Infect Microbiol. 2014 Jul 16;4:92. doi: 10.3389/fcimb.2014.00092. eCollection 2014. Review.


Acquiring and maintaining a normal oral microbiome: current perspective.

Zaura E, Nicu EA, Krom BP, Keijser BJ.

Front Cell Infect Microbiol. 2014 Jun 26;4:85. doi: 10.3389/fcimb.2014.00085. eCollection 2014. Review.


The anti-adhesive mode of action of a purified mushroom (Lentinus edodes) extract with anticaries and antigingivitis properties in two oral bacterial phatogens.

Signoretto C, Marchi A, Bertoncelli A, Burlacchini G, Papetti A, Pruzzo C, Zaura E, Lingström P, Ofek I, Pratten J, Spratt DA, Wilson M, Canepari P.

BMC Complement Altern Med. 2014 Feb 24;14:75. doi: 10.1186/1472-6882-14-75.


The effects of propidium monoazide treatment on the measured composition of polymicrobial biofilms after treatment with chlorhexidine.

Exterkate RA, Zaura E, Buijs MJ, Koopman J, Crielaard W, ten Cate JM.

Caries Res. 2014;48(4):291-8.


Systematic evaluation of bias in microbial community profiles induced by whole genome amplification.

Direito SO, Zaura E, Little M, Ehrenfreund P, Röling WF.

Environ Microbiol. 2014 Mar;16(3):643-57. doi: 10.1111/1462-2920.12365. Epub 2014 Jan 23.


Impacts of shallow geothermal energy production on redox processes and microbial communities.

Bonte M, Röling WF, Zaura E, van der Wielen PW, Stuyfzand PJ, van Breukelen BM.

Environ Sci Technol. 2013 Dec 17;47(24):14476-84. doi: 10.1021/es4030244. Epub 2013 Dec 4.


Sterile paper points as a bacterial DNA-contamination source in microbiome profiles of clinical samples.

van der Horst J, Buijs MJ, Laine ML, Wismeijer D, Loos BG, Crielaard W, Zaura E.

J Dent. 2013 Dec;41(12):1297-301. doi: 10.1016/j.jdent.2013.10.008. Epub 2013 Oct 14.


Effects of high-fluoride dentifrice (5,000-ppm) on caries-related plaque and salivary variables.

Mannaa A, Carlén A, Zaura E, Buijs MJ, Bukhary S, Lingström P.

Clin Oral Investig. 2014;18(5):1419-26. doi: 10.1007/s00784-013-1119-8. Epub 2013 Oct 8.


Effects of mushroom and chicory extracts on the shape, physiology and proteome of the cariogenic bacterium Streptococcus mutans.

Signoretto C, Marchi A, Bertoncelli A, Burlacchini G, Milli A, Tessarolo F, Caola I, Papetti A, Pruzzo C, Zaura E, Lingström P, Ofek I, Spratt DA, Pratten J, Wilson M, Canepari P.

BMC Complement Altern Med. 2013 May 29;13:117. doi: 10.1186/1472-6882-13-117.


Subgingival microbiome in smokers and non-smokers in periodontitis: an exploratory study using traditional targeted techniques and a next-generation sequencing.

Bizzarro S, Loos BG, Laine ML, Crielaard W, Zaura E.

J Clin Periodontol. 2013 May;40(5):483-92. doi: 10.1111/jcpe.12087. Epub 2013 Mar 13.


Identification of organic acids in Cichorium intybus inhibiting virulence-related properties of oral pathogenic bacteria.

Papetti A, Mascherpa D, Carazzone C, Stauder M, Spratt DA, Wilson M, Pratten J, Ciric L, Lingström P, Zaura E, Weiss E, Ofek I, Signoretto C, Pruzzo C, Gazzani G.

Food Chem. 2013 Jun 1;138(2-3):1706-12. doi: 10.1016/j.foodchem.2012.10.148. Epub 2012 Nov 15.


Adhesive microbeads for the targeting delivery of anticaries agents of vegetable origin.

Conti B, Colzani B, Papetti A, Mascherpa D, Dorati R, Genta I, Pruzzo C, Signoretto C, Zaura E, Lingström P, Ofek I, Wilson M, Spratt DA, Gazzani G.

Food Chem. 2013 Jun 1;138(2-3):898-904. doi: 10.1016/j.foodchem.2012.11.097. Epub 2012 Dec 5.


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