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Items: 1 to 50 of 81

1.

Mat_Peptide: Comprehensive annotation of mature peptides from polyproteins in five virus families.

Larsen CN, Sun G, Li X, Zaremba S, Zhao H, He S, Zhou L, Kumar S, Desborough V, Klem EB.

Bioinformatics. 2019 Oct 14. pii: btz777. doi: 10.1093/bioinformatics/btz777. [Epub ahead of print]

PMID:
31609421
2.

Increased risk for subarachnoid hemorrhage in patients with sleep apnea.

Zaremba S, Albus L, Schuss P, Vatter H, Klockgether T, Güresir E.

J Neurol. 2019 Jun;266(6):1351-1357. doi: 10.1007/s00415-019-09265-5. Epub 2019 Mar 5.

PMID:
30834980
3.

Effects of oat β-glucan consumption at breakfast on ad libitum eating, appetite, glycemia, insulinemia and GLP-1 concentrations in healthy subjects.

Zaremba SMM, Gow IF, Drummond S, McCluskey JT, Steinert RE.

Appetite. 2018 Sep 1;128:197-204. doi: 10.1016/j.appet.2018.06.019. Epub 2018 Jun 18.

PMID:
29920323
4.

In response to letter: Opioids use in ICU: a causal agent for sleep apnea, unmasking the undiagnosed sleep apnea or both in the ICU.

Timm FP, Zaremba S, Eikermann M.

Sleep. 2018 Jul 1;41(7). doi: 10.1093/sleep/zsy082. No abstract available.

PMID:
29790962
5.

2.45 GHz Microwave Processing and Its Influence on Glass Fiber Reinforced Plastics.

Teufl D, Zaremba S.

Materials (Basel). 2018 May 18;11(5). pii: E838. doi: 10.3390/ma11050838.

6.

Effects of Opioids Given to Facilitate Mechanical Ventilation on Sleep Apnea After Extubation in the Intensive Care Unit.

Timm FP, Zaremba S, Grabitz SD, Farhan HN, Zaremba S, Siliski E, Shin CH, Muse S, Friedrich S, Mojica JE, Kurth T, Ramachandran SK, Eikermann M.

Sleep. 2018 Jan 1;41(1). doi: 10.1093/sleep/zsx191.

PMID:
29182729
7.

The need to standardize ad libitum eating protocols in dietary fibre appetite research.

Zaremba SMM, Drummond S, Steinert RE.

Eur J Clin Nutr. 2017 May;71(5):570-572. doi: 10.1038/ejcn.2016.253. Epub 2016 Dec 21. No abstract available.

PMID:
28000690
8.

Influenza Research Database: An integrated bioinformatics resource for influenza virus research.

Zhang Y, Aevermann BD, Anderson TK, Burke DF, Dauphin G, Gu Z, He S, Kumar S, Larsen CN, Lee AJ, Li X, Macken C, Mahaffey C, Pickett BE, Reardon B, Smith T, Stewart L, Suloway C, Sun G, Tong L, Vincent AL, Walters B, Zaremba S, Zhao H, Zhou L, Zmasek C, Klem EB, Scheuermann RH.

Nucleic Acids Res. 2017 Jan 4;45(D1):D466-D474. doi: 10.1093/nar/gkw857. Epub 2016 Sep 26.

9.

Continuous Positive Airway Pressure Mitigates Opioid-induced Worsening of Sleep-disordered Breathing Early after Bariatric Surgery.

Zaremba S, Shin CH, Hutter MM, Malviya SA, Grabitz SD, MacDonald T, Diaz-Gil D, Ramachandran SK, Hess D, Malhotra A, Eikermann M.

Anesthesiology. 2016 Jul;125(1):92-104. doi: 10.1097/ALN.0000000000001160.

10.

Perioperative sleep apnea: a real problem or did we invent a new disease?

Zaremba S, Mojica JE, Eikermann M.

F1000Res. 2016 Jan 11;5. pii: F1000 Faculty Rev-48. doi: 10.12688/f1000research.7218.1. eCollection 2016. Review.

11.

Effects of obstructive sleep apnoea risk on postoperative respiratory complications: protocol for a hospital-based registry study.

Shin CH, Zaremba S, Devine S, Nikolov M, Kurth T, Eikermann M.

BMJ Open. 2016 Jan 13;6(1):e008436. doi: 10.1136/bmjopen-2015-008436.

12.

Cervical non-invasive vagus nerve stimulation (nVNS) for preventive and acute treatment of episodic and chronic migraine and migraine-associated sleep disturbance: a prospective observational cohort study.

Kinfe TM, Pintea B, Muhammad S, Zaremba S, Roeske S, Simon BJ, Vatter H.

J Headache Pain. 2015;16:101. doi: 10.1186/s10194-015-0582-9. Epub 2015 Dec 3.

13.

Elevated upper body position improves pregnancy-related OSA without impairing sleep quality or sleep architecture early after delivery.

Zaremba S, Mueller N, Heisig AM, Shin CH, Jung S, Leffert LR, Bateman BT, Pugsley LJ, Nagasaka Y, Duarte IM, Ecker JL, Eikermann M.

Chest. 2015 Oct;148(4):936-944. doi: 10.1378/chest.14-2973.

PMID:
25905714
14.

Bringing together PSOs and health IT. A perfect collaboration for quality patient care.

Zaremba S.

Health Manag Technol. 2014 Jun;35(6):16-7. No abstract available.

PMID:
25058977
15.
16.

Metadata-driven comparative analysis tool for sequences (meta-CATS): an automated process for identifying significant sequence variations that correlate with virus attributes.

Pickett BE, Liu M, Sadat EL, Squires RB, Noronha JM, He S, Jen W, Zaremba S, Gu Z, Zhou L, Larsen CN, Bosch I, Gehrke L, McGee M, Klem EB, Scheuermann RH.

Virology. 2013 Dec;447(1-2):45-51. doi: 10.1016/j.virol.2013.08.021. Epub 2013 Sep 14.

17.

Calabadion: A new agent to reverse the effects of benzylisoquinoline and steroidal neuromuscular-blocking agents.

Hoffmann U, Grosse-Sundrup M, Eikermann-Haerter K, Zaremba S, Ayata C, Zhang B, Ma D, Isaacs L, Eikermann M.

Anesthesiology. 2013 Aug;119(2):317-25. doi: 10.1097/ALN.0b013e3182910213.

PMID:
23549405
18.

[Treatment of the acute lung abscess without sequestration].

Shoĭkhet IaN, Roshev IP, Zaremba SV, Syzdykbaev MK, Ustinov VG.

Khirurgiia (Mosk). 2012;(9):55-9. Russian.

PMID:
23222982
19.

Virus pathogen database and analysis resource (ViPR): a comprehensive bioinformatics database and analysis resource for the coronavirus research community.

Pickett BE, Greer DS, Zhang Y, Stewart L, Zhou L, Sun G, Gu Z, Kumar S, Zaremba S, Larsen CN, Jen W, Klem EB, Scheuermann RH.

Viruses. 2012 Nov 19;4(11):3209-26. doi: 10.3390/v4113209.

20.

Muscle strength measurement in the intensive care unit: not everything that can be counted counts.

Waak K, Zaremba S, Eikermann M.

J Crit Care. 2013 Feb;28(1):96-8. doi: 10.1016/j.jcrc.2012.08.014. Epub 2012 Oct 24. No abstract available.

PMID:
23102532
21.

Cluster headache shows no association with rapid eye movement sleep.

Zaremba S, Holle D, Wessendorf TE, Diener HC, Katsarava Z, Obermann M.

Cephalalgia. 2012 Mar;32(4):289-96. doi: 10.1177/0333102411436332. Epub 2012 Feb 15.

PMID:
22337861
22.

Influenza research database: an integrated bioinformatics resource for influenza research and surveillance.

Squires RB, Noronha J, Hunt V, García-Sastre A, Macken C, Baumgarth N, Suarez D, Pickett BE, Zhang Y, Larsen CN, Ramsey A, Zhou L, Zaremba S, Kumar S, Deitrich J, Klem E, Scheuermann RH.

Influenza Other Respir Viruses. 2012 Nov;6(6):404-16. doi: 10.1111/j.1750-2659.2011.00331.x. Epub 2012 Jan 20.

23.

Ketamine activates breathing and abolishes the coupling between loss of consciousness and upper airway dilator muscle dysfunction.

Eikermann M, Grosse-Sundrup M, Zaremba S, Henry ME, Bittner EA, Hoffmann U, Chamberlin NL.

Anesthesiology. 2012 Jan;116(1):35-46. doi: 10.1097/ALN.0b013e31823d010a.

24.

ViPR: an open bioinformatics database and analysis resource for virology research.

Pickett BE, Sadat EL, Zhang Y, Noronha JM, Squires RB, Hunt V, Liu M, Kumar S, Zaremba S, Gu Z, Zhou L, Larson CN, Dietrich J, Klem EB, Scheuermann RH.

Nucleic Acids Res. 2012 Jan;40(Database issue):D593-8. doi: 10.1093/nar/gkr859. Epub 2011 Oct 17.

25.

Serial polysomnography in hypnic headache.

Holle D, Wessendorf TE, Zaremba S, Naegel S, Diener HC, Katsarava Z, Gaul C, Obermann M.

Cephalalgia. 2011 Feb;31(3):286-90. doi: 10.1177/0333102410381146. Epub 2010 Aug 10.

PMID:
20699335
26.

Effects of pentobarbital on upper airway patency during sleep.

Eikermann M, Eckert DJ, Chamberlin NL, Jordan AS, Zaremba S, Smith S, Rosow C, Malhotra A.

Eur Respir J. 2010 Sep;36(3):569-76. doi: 10.1183/09031936.00153809. Epub 2009 Dec 23.

27.

Transcriptomic response of Escherichia coli O157:H7 to oxidative stress.

Wang S, Deng K, Zaremba S, Deng X, Lin C, Wang Q, Tortorello ML, Zhang W.

Appl Environ Microbiol. 2009 Oct;75(19):6110-23. doi: 10.1128/AEM.00914-09. Epub 2009 Aug 7.

28.

Text-mining of PubMed abstracts by natural language processing to create a public knowledge base on molecular mechanisms of bacterial enteropathogens.

Zaremba S, Ramos-Santacruz M, Hampton T, Shetty P, Fedorko J, Whitmore J, Greene JM, Perna NT, Glasner JD, Plunkett G 3rd, Shaker M, Pot D.

BMC Bioinformatics. 2009 Jun 10;10:177. doi: 10.1186/1471-2105-10-177.

29.

Pentobarbital dose-dependently increases respiratory genioglossus muscle activity while impairing diaphragmatic function in anesthetized rats.

Eikermann M, Fassbender P, Zaremba S, Jordan AS, Rosow C, Malhotra A, Chamberlin NL.

Anesthesiology. 2009 Jun;110(6):1327-34. doi: 10.1097/ALN.0b013e3181a16337.

30.

Neostigmine but not sugammadex impairs upper airway dilator muscle activity and breathing.

Eikermann M, Zaremba S, Malhotra A, Jordan AS, Rosow C, Chamberlin NL.

Br J Anaesth. 2008 Sep;101(3):344-9. doi: 10.1093/bja/aen176. Epub 2008 Jun 16.

31.

Differential effects of isoflurane and propofol on upper airway dilator muscle activity and breathing.

Eikermann M, Malhotra A, Fassbender P, Zaremba S, Jordan AS, Gautam S, White DP, Chamberlin NL.

Anesthesiology. 2008 May;108(5):897-906. doi: 10.1097/ALN.0b013e31816c8a60.

32.

Enteropathogen Resource Integration Center (ERIC): bioinformatics support for research on biodefense-relevant enterobacteria.

Glasner JD, Plunkett G 3rd, Anderson BD, Baumler DJ, Biehl BS, Burland V, Cabot EL, Darling AE, Mau B, Neeno-Eckwall EC, Pot D, Qiu Y, Rissman AI, Worzella S, Zaremba S, Fedorko J, Hampton T, Liss P, Rusch M, Shaker M, Shaull L, Shetty P, Thotakura S, Whitmore J, Blattner FR, Greene JM, Perna NT.

Nucleic Acids Res. 2008 Jan;36(Database issue):D519-23. Epub 2007 Nov 13.

33.

A new asset for pathogen informatics--the Enteropathogen Resource Integration Center (ERIC), an NIAID Bioinformatics Resource Center for Biodefense and Emerging/Re-emerging Infectious Disease.

Greene JM, Plunkett G 3rd, Burland V, Glasner J, Cabot E, Anderson B, Neeno-Eckwall E, Qiu Y, Mau B, Rusch M, Liss P, Hampton T, Pot D, Shaker M, Shaull L, Shetty P, Shi C, Whitmore J, Wong M, Zaremba S, Blattner FR, Perna NT.

Adv Exp Med Biol. 2007;603:28-42.

PMID:
17966403
34.
35.

Cancer vaccine development.

Schlom J, Tsang KY, Kantor JA, Abrams SI, Zaremba S, Greiner J, Hodge JW.

Expert Opin Investig Drugs. 1998 Sep;7(9):1439-52.

PMID:
15992042
36.

[Surgery for esophageal cancer: 10 years experience].

Cicenas S, Stratilatovas E, Miliauskas P, Sangaila E, Piscikas DA, Jakubauskiene R, Askinis R, Zaremba S.

Medicina (Kaunas). 2004;40 Suppl 1:179-82. Lithuanian.

37.

[Possibilities of diagnosis and treatment of malignant pleural mesothelioma].

Cicenas S, Zaremba S, Jakubauskiene R.

Medicina (Kaunas). 2004;40 Suppl 1:152-5. Lithuanian.

38.
40.

Strategies in the development of recombinant vaccines for colon cancer.

Schlom J, Tsang KY, Kantor JA, Abrams SI, Zaremba S, Greiner J, Hodge JW.

Semin Oncol. 1999 Dec;26(6):672-82. Review.

PMID:
10606260
41.

Context-dependence of amino acid residue pairing in antiparallel beta-sheets.

Zaremba SM, Gregoret LM.

J Mol Biol. 1999 Aug 13;291(2):463-79.

PMID:
10438632
42.

Phenotypic stability of a cytotoxic T-cell line directed against an immunodominant epitope of human carcinoembryonic antigen.

Tsang KY, Zhu M, Nieroda CA, Correale P, Zaremba S, Hamilton JM, Cole D, Lam C, Schlom J.

Clin Cancer Res. 1997 Dec;3(12 Pt 1):2439-49.

43.

Generation of human cytolytic T lymphocyte lines directed against prostate-specific antigen (PSA) employing a PSA oligoepitope peptide.

Correale P, Walmsley K, Zaremba S, Zhu M, Schlom J, Tsang KY.

J Immunol. 1998 Sep 15;161(6):3186-94.

44.

Olanzapine compared with chlorpromazine in treatment-resistant schizophrenia.

Conley RR, Tamminga CA, Bartko JJ, Richardson C, Peszke M, Lingle J, Hegerty J, Love R, Gounaris C, Zaremba S.

Am J Psychiatry. 1998 Jul;155(7):914-20.

PMID:
9659857
45.

Identification of an enhancer agonist cytotoxic T lymphocyte peptide from human carcinoembryonic antigen.

Zaremba S, Barzaga E, Zhu M, Soares N, Tsang KY, Schlom J.

Cancer Res. 1997 Oct 15;57(20):4570-7.

46.

In vitro generation of human cytotoxic T lymphocytes specific for peptides derived from prostate-specific antigen.

Correale P, Walmsley K, Nieroda C, Zaremba S, Zhu M, Schlom J, Tsang KY.

J Natl Cancer Inst. 1997 Feb 19;89(4):293-300.

PMID:
9048833
47.

Identification of overlapping epitopes in mutant ras oncogene peptides that activate CD4+ and CD8+ T cell responses.

Abrams SI, Stanziale SF, Lunin SD, Zaremba S, Schlom J.

Eur J Immunol. 1996 Feb;26(2):435-43.

PMID:
8617315
48.

Peptide-specific activation of cytolytic CD4+ T lymphocytes against tumor cells bearing mutated epitopes of K-ras p21.

Abrams SI, Dobrzanski MJ, Wells DT, Stanziale SF, Zaremba S, Masuelli L, Kantor JA, Schlom J, Masuelle L [corrected to Masuelli L].

Eur J Immunol. 1995 Sep;25(9):2588-97. Erratum in: Eur J Immunol 1995 Dec;25(12):3525.

PMID:
7589131
49.

Generation of human cytotoxic T cells specific for human carcinoembryonic antigen epitopes from patients immunized with recombinant vaccinia-CEA vaccine.

Tsang KY, Zaremba S, Nieroda CA, Zhu MZ, Hamilton JM, Schlom J.

J Natl Cancer Inst. 1995 Jul 5;87(13):982-90.

PMID:
7629885
50.

Biologic properties of a CH2 domain-deleted recombinant immunoglobulin.

Slavin-Chiorini DC, Horan Hand PH, Kashmiri SV, Calvo B, Zaremba S, Schlom J.

Int J Cancer. 1993 Jan 2;53(1):97-103.

PMID:
8416208

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