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Items: 15

1.

Environmental stimuli drive a transition from cooperation to competition in synthetic phototrophic communities.

Zuñiga C, Li CT, Yu G, Al-Bassam MM, Li T, Jiang L, Zaramela LS, Guarnieri M, Betenbaugh MJ, Zengler K.

Nat Microbiol. 2019 Oct 7. doi: 10.1038/s41564-019-0567-6. [Epub ahead of print]

PMID:
31591554
2.

Gut bacteria responding to dietary change encode sialidases that exhibit preference for red meat-associated carbohydrates.

Zaramela LS, Martino C, Alisson-Silva F, Rees SD, Diaz SL, Chuzel L, Ganatra MB, Taron CH, Secrest P, Zuñiga C, Huang J, Siegel D, Chang G, Varki A, Zengler K.

Nat Microbiol. 2019 Sep 23. doi: 10.1038/s41564-019-0564-9. [Epub ahead of print]

PMID:
31548686
3.

Establishing microbial composition measurement standards with reference frames.

Morton JT, Marotz C, Washburne A, Silverman J, Zaramela LS, Edlund A, Zengler K, Knight R.

Nat Commun. 2019 Jun 20;10(1):2719. doi: 10.1038/s41467-019-10656-5.

4.

The impact of skin care products on skin chemistry and microbiome dynamics.

Bouslimani A, da Silva R, Kosciolek T, Janssen S, Callewaert C, Amir A, Dorrestein K, Melnik AV, Zaramela LS, Kim JN, Humphrey G, Schwartz T, Sanders K, Brennan C, Luzzatto-Knaan T, Ackermann G, McDonald D, Zengler K, Knight R, Dorrestein PC.

BMC Biol. 2019 Jun 12;17(1):47. doi: 10.1186/s12915-019-0660-6.

5.

Quorum sensing between bacterial species on the skin protects against epidermal injury in atopic dermatitis.

Williams MR, Costa SK, Zaramela LS, Khalil S, Todd DA, Winter HL, Sanford JA, O'Neill AM, Liggins MC, Nakatsuji T, Cech NB, Cheung AL, Zengler K, Horswill AR, Gallo RL.

Sci Transl Med. 2019 May 1;11(490). pii: eaat8329. doi: 10.1126/scitranslmed.aat8329.

PMID:
31043573
6.

The nonlesional skin surface distinguishes atopic dermatitis with food allergy as a unique endotype.

Leung DYM, Calatroni A, Zaramela LS, LeBeau PK, Dyjack N, Brar K, David G, Johnson K, Leung S, Ramirez-Gama M, Liang B, Rios C, Montgomery MT, Richers BN, Hall CF, Norquest KA, Jung J, Bronova I, Kreimer S, Talbot CC Jr, Crumrine D, Cole RN, Elias P, Zengler K, Seibold MA, Berdyshev E, Goleva E.

Sci Transl Med. 2019 Feb 20;11(480). pii: eaav2685. doi: 10.1126/scitranslmed.aav2685.

PMID:
30787169
7.

Identification of potential target genes associated with the reversion of androgen-dependent skeletal muscle atrophy.

de O Coelho P, Guarnier FA, Figueiredo LB, Zaramela LS, Pacini ESA, Godinho RO, Gomes MD.

Arch Biochem Biophys. 2019 Mar 15;663:173-182. doi: 10.1016/j.abb.2019.01.009. Epub 2019 Jan 11.

PMID:
30639329
8.

Optimization of carbon and energy utilization through differential translational efficiency.

Al-Bassam MM, Kim JN, Zaramela LS, Kellman BP, Zuniga C, Wozniak JM, Gonzalez DJ, Zengler K.

Nat Commun. 2018 Oct 26;9(1):4474. doi: 10.1038/s41467-018-06993-6.

9.

Internal RNAs overlapping coding sequences can drive the production of alternative proteins in archaea.

Ten-Caten F, Vêncio RZN, Lorenzetti APR, Zaramela LS, Santana AC, Koide T.

RNA Biol. 2018;15(8):1119-1132. doi: 10.1080/15476286.2018.1509661. Epub 2018 Sep 19. Erratum in: RNA Biol. 2018;15(12):1513.

10.

The social network of microorganisms - how auxotrophies shape complex communities.

Zengler K, Zaramela LS.

Nat Rev Microbiol. 2018 Jun;16(6):383-390. doi: 10.1038/s41579-018-0004-5. Review.

11.

Improving saliva shotgun metagenomics by chemical host DNA depletion.

Marotz CA, Sanders JG, Zuniga C, Zaramela LS, Knight R, Zengler K.

Microbiome. 2018 Feb 27;6(1):42. doi: 10.1186/s40168-018-0426-3.

12.

Metabolic capability and in situ activity of microorganisms in an oil reservoir.

Liu YF, Galzerani DD, Mbadinga SM, Zaramela LS, Gu JD, Mu BZ, Zengler K.

Microbiome. 2018 Jan 5;6(1):5. doi: 10.1186/s40168-017-0392-1.

13.

Development of New Modular Genetic Tools for Engineering the Halophilic Archaeon Halobacterium salinarum.

Silva-Rocha R, Pontelli MC, Furtado GP, Zaramela LS, Koide T.

PLoS One. 2015 Jun 10;10(6):e0129215. doi: 10.1371/journal.pone.0129215. eCollection 2015.

14.

Sense overlapping transcripts in IS1341-type transposase genes are functional non-coding RNAs in archaea.

Gomes-Filho JV, Zaramela LS, Italiani VC, Baliga NS, Vêncio RZ, Koide T.

RNA Biol. 2015;12(5):490-500. doi: 10.1080/15476286.2015.1019998.

15.

Transcription start site associated RNAs (TSSaRNAs) are ubiquitous in all domains of life.

Zaramela LS, Vêncio RZ, ten-Caten F, Baliga NS, Koide T.

PLoS One. 2014 Sep 19;9(9):e107680. doi: 10.1371/journal.pone.0107680. eCollection 2014.

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