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Items: 1 to 50 of 54

1.

Agr2-interacting Prod1-like protein Tfp4 from Xenopus laevis is necessary for early forebrain and eye development as well as for the tadpole appendage regeneration.

Tereshina MB, Ivanova AS, Eroshkin FM, Korotkova DD, Nesterenko AM, Bayramov AV, Solovieva EA, Parshina EA, Orlov EE, Martynova NY, Zaraisky AG.

Genesis. 2019 May;57(5):e23293. doi: 10.1002/dvg.23293. Epub 2019 Mar 26.

PMID:
30912273
2.

Genetically encodable bioluminescent system from fungi.

Kotlobay AA, Sarkisyan KS, Mokrushina YA, Marcet-Houben M, Serebrovskaya EO, Markina NM, Gonzalez Somermeyer L, Gorokhovatsky AY, Vvedensky A, Purtov KV, Petushkov VN, Rodionova NS, Chepurnyh TV, Fakhranurova LI, Guglya EB, Ziganshin R, Tsarkova AS, Kaskova ZM, Shender V, Abakumov M, Abakumova TO, Povolotskaya IS, Eroshkin FM, Zaraisky AG, Mishin AS, Dolgov SV, Mitiouchkina TY, Kopantzev EP, Waldenmaier HE, Oliveira AG, Oba Y, Barsova E, Bogdanova EA, Gabaldón T, Stevani CV, Lukyanov S, Smirnov IV, Gitelson JI, Kondrashov FA, Yampolsky IV.

Proc Natl Acad Sci U S A. 2018 Dec 11;115(50):12728-12732. doi: 10.1073/pnas.1803615115. Epub 2018 Nov 26.

3.

The cytoskeletal protein Zyxin interacts with the zinc-finger transcription factor Zic1 and plays the role of a scaffold for Gli1 and Zic1 interactions during early development of Xenopus laevis.

Martynova NY, Parshina EA, Ermolina LV, Zaraisky AG.

Biochem Biophys Res Commun. 2018 Sep 26;504(1):251-256. doi: 10.1016/j.bbrc.2018.08.164. Epub 2018 Sep 1.

PMID:
30180953
4.

Ras-dva small GTPases lost during evolution of amniotes regulate regeneration in anamniotes.

Ivanova AS, Korotkova DD, Ermakova GV, Martynova NY, Zaraisky AG, Tereshina MB.

Sci Rep. 2018 Aug 29;8(1):13035. doi: 10.1038/s41598-018-30811-0.

5.

HMG-box factor SoxD/Sox15 and homeodomain-containing factor Xanf1/Hesx1 directly interact and regulate the expression of Xanf1/Hesx1 during early forebrain development in Xenopus laevis.

Martynova NY, Eroshkin FM, Оrlov EE, Zaraisky AG.

Gene. 2018 Jan 5;638:52-59. doi: 10.1016/j.gene.2017.09.024. Epub 2017 Sep 14.

PMID:
28918251
6.

Mechano-sensitive regulation of gene expression during the embryonic development.

Eroshkin FM, Zaraisky AG.

Genesis. 2017 Apr;55(4). doi: 10.1002/dvg.23026. Epub 2017 Mar 17. Review.

PMID:
28236362
7.

Morphogene adsorption as a Turing instability regulator: Theoretical analysis and possible applications in multicellular embryonic systems.

Nesterenko AM, Kuznetsov MB, Korotkova DD, Zaraisky AG.

PLoS One. 2017 Feb 7;12(2):e0171212. doi: 10.1371/journal.pone.0171212. eCollection 2017.

8.

The presence of Anf/Hesx1 homeobox gene in lampreys suggests that it could play an important role in emergence of telencephalon.

Bayramov AV, Ermakova GV, Eroshkin FM, Kucheryavyy AV, Martynova NY, Zaraisky AG.

Sci Rep. 2016 Dec 23;6:39849. doi: 10.1038/srep39849.

9.

[Secreted Protein Noggin4 Participates in the Formation of Forebrain Structures in Xenopus laevis by Inhibiting the Wnt/Beta-Catenin Signaling Pathway].

Bayramov AV, Eroshkin FM, Borodulin AV, Yu Martynova N, Ermakova GV, Zaraisky AG.

Ontogenez. 2016 Jul-Aug;47(4):229-34. Russian.

PMID:
30272399
10.

[The Point Mutation in NOGGIN2 Protein That Enhances Its Ability to Bind Activin].

Eroshkin FM, Fedina NV, Martynova NY, Bayramov AV, Zaraisky AG.

Bioorg Khim. 2015 Nov-Dec;41(6):749-51. Russian.

PMID:
27125031
11.

Noggin4 is a long-range inhibitor of Wnt8 signalling that regulates head development in Xenopus laevis.

Eroshkin FM, Nesterenko AM, Borodulin AV, Martynova NY, Ermakova GV, Gyoeva FK, Orlov EE, Belogurov AA, Lukyanov KA, Bayramov AV, Zaraisky AG.

Sci Rep. 2016 Mar 14;6:23049. doi: 10.1038/srep23049.

12.

[ag1 Is Required for the Fin Regeneration in Danio rerio].

Ivanova AS, Shandarin IN, Minin AA, Tereshina MB, Zaraisky AG.

Bioorg Khim. 2015 Jul-Aug;41(4):427-31. Russian.

PMID:
26615638
13.

Affinity of the heparin binding motif of Noggin1 to heparan sulfate and its visualization in the embryonic tissues.

Nesterenko AM, Orlov EE, Ermakova GV, Ivanov IA, Semenyuk PI, Orlov VN, Martynova NY, Zaraisky AG.

Biochem Biophys Res Commun. 2015 Dec 4-11;468(1-2):331-6. doi: 10.1016/j.bbrc.2015.10.100. Epub 2015 Oct 23.

PMID:
26525852
14.

Fluorescent ratiometric pH indicator SypHer2: Applications in neuroscience and regenerative biology.

Matlashov ME, Bogdanova YA, Ermakova GV, Mishina NM, Ermakova YG, Nikitin ES, Balaban PM, Okabe S, Lukyanov S, Enikolopov G, Zaraisky AG, Belousov VV.

Biochim Biophys Acta. 2015 Nov;1850(11):2318-28. doi: 10.1016/j.bbagen.2015.08.002. Epub 2015 Aug 8.

15.

The secreted factor Ag1 missing in higher vertebrates regulates fins regeneration in Danio rerio.

Ivanova AS, Shandarin IN, Ermakova GV, Minin AA, Tereshina MB, Zaraisky AG.

Sci Rep. 2015 Jan 29;5:8123. doi: 10.1038/srep08123.

16.

Method for quantitative analysis of nonsense-mediated mRNA decay at the single cell level.

Pereverzev AP, Gurskaya NG, Ermakova GV, Kudryavtseva EI, Markina NM, Kotlobay AA, Lukyanov SA, Zaraisky AG, Lukyanov KA.

Sci Rep. 2015 Jan 12;5:7729. doi: 10.1038/srep07729.

17.
18.

The cytoskeletal protein Zyxin inhibits Shh signaling during the CNS patterning in Xenopus laevis through interaction with the transcription factor Gli1.

Martynova NY, Ermolina LV, Ermakova GV, Eroshkin FM, Gyoeva FK, Baturina NS, Zaraisky AG.

Dev Biol. 2013 Aug 1;380(1):37-48. doi: 10.1016/j.ydbio.2013.05.005. Epub 2013 May 15.

19.

Agr genes, missing in amniotes, are involved in the body appendages regeneration in frog tadpoles.

Ivanova AS, Tereshina MB, Ermakova GV, Belousov VV, Zaraisky AG.

Sci Rep. 2013;3:1279. doi: 10.1038/srep01279.

20.

A monomeric red fluorescent protein with low cytotoxicity.

Shemiakina II, Ermakova GV, Cranfill PJ, Baird MA, Evans RA, Souslova EA, Staroverov DB, Gorokhovatsky AY, Putintseva EV, Gorodnicheva TV, Chepurnykh TV, Strukova L, Lukyanov S, Zaraisky AG, Davidson MW, Chudakov DM, Shcherbo D.

Nat Commun. 2012;3:1204. doi: 10.1038/ncomms2208.

PMID:
23149748
21.

Noggin4 expression during chick embryonic development.

Borodulin AV, Eroshkin FM, Bayramov AV, Zaraisky AG.

Int J Dev Biol. 2012;56(5):403-6. doi: 10.1387/ijdb.120020az.

22.

Novel functions of Noggin proteins: inhibition of Activin/Nodal and Wnt signaling.

Bayramov AV, Eroshkin FM, Martynova NY, Ermakova GV, Solovieva EA, Zaraisky AG.

Development. 2011 Dec;138(24):5345-56. doi: 10.1242/dev.068908. Epub 2011 Nov 9.

23.

Light-induced blockage of cell division with a chromatin-targeted phototoxic fluorescent protein.

Serebrovskaya EO, Gorodnicheva TV, Ermakova GV, Solovieva EA, Sharonov GV, Zagaynova EV, Chudakov DM, Lukyanov S, Zaraisky AG, Lukyanov KA.

Biochem J. 2011 Apr 1;435(1):65-71. doi: 10.1042/BJ20101217.

PMID:
21214518
24.

Expression patterns of genes encoding small GTPases Ras-dva-1 and Ras-dva-2 in the Xenopus laevis tadpoles.

Tereshina MB, Bayramov AV, Zaraisky AG.

Gene Expr Patterns. 2011 Jan-Feb;11(1-2):156-61. doi: 10.1016/j.gep.2010.10.009. Epub 2010 Nov 4.

PMID:
21056124
25.

Near-infrared fluorescent proteins.

Shcherbo D, Shemiakina II, Ryabova AV, Luker KE, Schmidt BT, Souslova EA, Gorodnicheva TV, Strukova L, Shidlovskiy KM, Britanova OV, Zaraisky AG, Lukyanov KA, Loschenov VB, Luker GD, Chudakov DM.

Nat Methods. 2010 Oct;7(10):827-9. doi: 10.1038/nmeth.1501. Epub 2010 Sep 5.

26.

Far-red fluorescent tags for protein imaging in living tissues.

Shcherbo D, Murphy CS, Ermakova GV, Solovieva EA, Chepurnykh TV, Shcheglov AS, Verkhusha VV, Pletnev VZ, Hazelwood KL, Roche PM, Lukyanov S, Zaraisky AG, Davidson MW, Chudakov DM.

Biochem J. 2009 Mar 15;418(3):567-74. doi: 10.1042/BJ20081949.

27.

The LIM-domain protein Zyxin binds the homeodomain factor Xanf1/Hesx1 and modulates its activity in the anterior neural plate of Xenopus laevis embryo.

Martynova NY, Eroshkin FM, Ermolina LV, Ermakova GV, Korotaeva AL, Smurova KM, Gyoeva FK, Zaraisky AG.

Dev Dyn. 2008 Mar;237(3):736-49. doi: 10.1002/dvdy.21471.

28.

Bright far-red fluorescent protein for whole-body imaging.

Shcherbo D, Merzlyak EM, Chepurnykh TV, Fradkov AF, Ermakova GV, Solovieva EA, Lukyanov KA, Bogdanova EA, Zaraisky AG, Lukyanov S, Chudakov DM.

Nat Methods. 2007 Sep;4(9):741-6. Epub 2007 Aug 26.

PMID:
17721542
29.

The homeodomain factor Xanf represses expression of genes in the presumptive rostral forebrain that specify more caudal brain regions.

Ermakova GV, Solovieva EA, Martynova NY, Zaraisky AG.

Dev Biol. 2007 Jul 15;307(2):483-97. Epub 2007 Apr 5.

30.

Structural basis for the fast maturation of Arthropoda green fluorescent protein.

Evdokimov AG, Pokross ME, Egorov NS, Zaraisky AG, Yampolsky IV, Merzlyak EM, Shkoporov AN, Sander I, Lukyanov KA, Chudakov DM.

EMBO Rep. 2006 Oct;7(10):1006-12. Epub 2006 Aug 25.

31.

Hydroxyproline-based DNA mimics provide an efficient gene silencing in vitro and in vivo.

Efimov VA, Birikh KR, Staroverov DB, Lukyanov SA, Tereshina MB, Zaraisky AG, Chakhmakhcheva OG.

Nucleic Acids Res. 2006 May 2;34(8):2247-57. Print 2006.

32.
33.

Multiple noggins in vertebrate genome: cloning and expression of noggin2 and noggin4 in Xenopus laevis.

Eroshkin FM, Ermakova GV, Bayramov AV, Zaraisky AG.

Gene Expr Patterns. 2006 Jan;6(2):180-6. Epub 2005 Sep 15.

PMID:
16168719
34.
35.

Patterning the forebrain: FoxA4a/Pintallavis and Xvent2 determine the posterior limit of Xanf1 expression in the neural plate.

Martynova N, Eroshkin F, Ermakova G, Bayramov A, Gray J, Grainger R, Zaraisky A.

Development. 2004 May;131(10):2329-38.

36.

High stability of Discosoma DsRed as compared to Aequorea EGFP.

Verkhusha VV, Kuznetsova IM, Stepanenko OV, Zaraisky AG, Shavlovsky MM, Turoverov KK, Uversky VN.

Biochemistry. 2003 Jul 8;42(26):7879-84.

PMID:
12834339
37.

Expression zones of three novel genes abut the developing anterior neural plate of Xenopus embryo.

Novoselov VV, Alexandrova EM, Ermakova GV, Zaraisky AG.

Gene Expr Patterns. 2003 May;3(2):225-30.

PMID:
12711553
38.

Kindling fluorescent proteins for precise in vivo photolabeling.

Chudakov DM, Belousov VV, Zaraisky AG, Novoselov VV, Staroverov DB, Zorov DB, Lukyanov S, Lukyanov KA.

Nat Biotechnol. 2003 Feb;21(2):191-4. Epub 2003 Jan 13.

PMID:
12524551
39.

Characterization of cis-regulatory elements of the homeobox gene Xanf-1.

Eroshkin F, Kazanskaya O, Martynova N, Zaraisky A.

Gene. 2002 Feb 20;285(1-2):279-86.

PMID:
12039055
40.

Analysis of DsRed Mutants. Space around the fluorophore accelerates fluorescence development.

Terskikh AV, Fradkov AF, Zaraisky AG, Kajava AV, Angres B.

J Biol Chem. 2002 Mar 8;277(10):7633-6. Epub 2001 Dec 31.

41.

Subcellular localization and targeting of glucocorticoid receptor protein fusions expressed in transgenic Arabidopsis thaliana.

Brockmann B, Smith MW, Zaraisky AG, Harrison K, Okada K, Kamiya Y.

Plant Cell Physiol. 2001 Sep;42(9):942-51.

PMID:
11577188
42.

"Fluorescent timer": protein that changes color with time.

Terskikh A, Fradkov A, Ermakova G, Zaraisky A, Tan P, Kajava AV, Zhao X, Lukyanov S, Matz M, Kim S, Weissman I, Siebert P.

Science. 2000 Nov 24;290(5496):1585-8.

43.

Natural animal coloration can Be determined by a nonfluorescent green fluorescent protein homolog.

Lukyanov KA, Fradkov AF, Gurskaya NG, Matz MV, Labas YA, Savitsky AP, Markelov ML, Zaraisky AG, Zhao X, Fang Y, Tan W, Lukyanov SA.

J Biol Chem. 2000 Aug 25;275(34):25879-82.

44.

Fluorescent proteins from nonbioluminescent Anthozoa species.

Matz MV, Fradkov AF, Labas YA, Savitsky AP, Zaraisky AG, Markelov ML, Lukyanov SA.

Nat Biotechnol. 1999 Oct;17(10):969-73. Erratum in: Nat Biotechnol 1999 Dec;17(12):1227.

PMID:
10504696
45.

The homeobox gene, Xanf-1, can control both neural differentiation and patterning in the presumptive anterior neurectoderm of the Xenopus laevis embryo.

Ermakova GV, Alexandrova EM, Kazanskaya OV, Vasiliev OL, Smith MW, Zaraisky AG.

Development. 1999 Oct;126(20):4513-23.

46.

Inductive interactions regulating body patterning in planarian, revealed by analysis of expression of novel gene scarf.

Bogdanova E, Matz M, Tarabykin V, Usman N, Shagin D, Zaraisky A, Lukyanov S.

Dev Biol. 1998 Feb 15;194(2):172-81.

47.

A novel marker of early epidermal differentiation: cDNA subtractive cloning starting on a single explant of Xenopus laevis gastrula epidermis.

Vasiliev OL, Lukyanov SA, Belyavsky AV, Kazanskaya OV, Zaraisky AG.

Int J Dev Biol. 1997 Dec;41(6):877-82.

48.

Anf: a novel class of vertebrate homeobox genes expressed at the anterior end of the main embryonic axis.

Kazanskaya OV, Severtzova EA, Barth KA, Ermakova GV, Lukyanov SA, Benyumov AO, Pannese M, Boncinelli E, Wilson SW, Zaraisky AG.

Gene. 1997 Oct 24;200(1-2):25-34.

PMID:
9373136
49.

A novel TGF-beta-like gene, fugacin, specifically expressed in the Spemann organizer of Xenopus.

Ecochard V, Cayrol C, Foulquier F, Zaraisky A, Duprat AM.

Dev Biol. 1995 Dec;172(2):699-703.

50.

The homeobox-containing gene XANF-1 may control development of the Spemann organizer.

Zaraisky AG, Ecochard V, Kazanskaya OV, Lukyanov SA, Fesenko IV, Duprat AM.

Development. 1995 Nov;121(11):3839-47.

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