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Items: 10

1.

Molecular Methods for Detection of Antimicrobial Resistance.

Anjum MF, Zankari E, Hasman H.

Microbiol Spectr. 2017 Dec;5(6). doi: 10.1128/microbiolspec.ARBA-0011-2017. Review.

PMID:
29219107
2.

PointFinder: a novel web tool for WGS-based detection of antimicrobial resistance associated with chromosomal point mutations in bacterial pathogens.

Zankari E, Allesøe R, Joensen KG, Cavaco LM, Lund O, Aarestrup FM.

J Antimicrob Chemother. 2017 Oct 1;72(10):2764-2768. doi: 10.1093/jac/dkx217.

3.

Detection of linezolid resistance due to the optrA gene in Enterococcus faecalis from poultry meat from the American continent (Colombia).

Cavaco LM, Bernal JF, Zankari E, Léon M, Hendriksen RS, Perez-Gutierrez E, Aarestrup FM, Donado-Godoy P.

J Antimicrob Chemother. 2017 Mar 1;72(3):678-683. doi: 10.1093/jac/dkw490.

PMID:
27999039
4.

Benchmarking of methods for identification of antimicrobial resistance genes in bacterial whole genome data.

Clausen PT, Zankari E, Aarestrup FM, Lund O.

J Antimicrob Chemother. 2016 Sep;71(9):2484-8. doi: 10.1093/jac/dkw184. Epub 2016 Jun 30.

PMID:
27365186
5.

Detection of mcr-1 encoding plasmid-mediated colistin-resistant Escherichia coli isolates from human bloodstream infection and imported chicken meat, Denmark 2015.

Hasman H, Hammerum AM, Hansen F, Hendriksen RS, Olesen B, Agersø Y, Zankari E, Leekitcharoenphon P, Stegger M, Kaas RS, Cavaco LM, Hansen DS, Aarestrup FM, Skov RL.

Euro Surveill. 2015;20(49). doi: 10.2807/1560-7917.ES.2015.20.49.30085. Erratum in: Euro Surveill. 2015;20(50). doi: 10.2807/1560-7917.ES.2015.20.50.30091.

6.

Comparison of the web tools ARG-ANNOT and ResFinder for detection of resistance genes in bacteria.

Zankari E.

Antimicrob Agents Chemother. 2014 Aug;58(8):4986. doi: 10.1128/AAC.02620-14. No abstract available.

7.

In silico detection and typing of plasmids using PlasmidFinder and plasmid multilocus sequence typing.

Carattoli A, Zankari E, García-Fernández A, Voldby Larsen M, Lund O, Villa L, Møller Aarestrup F, Hasman H.

Antimicrob Agents Chemother. 2014 Jul;58(7):3895-903. doi: 10.1128/AAC.02412-14. Epub 2014 Apr 28.

8.

Genomics of an emerging clone of Salmonella serovar Typhimurium ST313 from Nigeria and the Democratic Republic of Congo.

Leekitcharoenphon P, Friis C, Zankari E, Svendsen CA, Price LB, Rahmani M, Herrero-Fresno A, Fashae K, Vandenberg O, Aarestrup FM, Hendriksen RS.

J Infect Dev Ctries. 2013 Oct 15;7(10):696-706. doi: 10.3855/jidc.3328.

9.

Genotyping using whole-genome sequencing is a realistic alternative to surveillance based on phenotypic antimicrobial susceptibility testing.

Zankari E, Hasman H, Kaas RS, Seyfarth AM, Agersø Y, Lund O, Larsen MV, Aarestrup FM.

J Antimicrob Chemother. 2013 Apr;68(4):771-7. doi: 10.1093/jac/dks496. Epub 2012 Dec 11.

PMID:
23233485
10.

Identification of acquired antimicrobial resistance genes.

Zankari E, Hasman H, Cosentino S, Vestergaard M, Rasmussen S, Lund O, Aarestrup FM, Larsen MV.

J Antimicrob Chemother. 2012 Nov;67(11):2640-4. doi: 10.1093/jac/dks261. Epub 2012 Jul 10.

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