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Modifications of H3K4 methylation levels are associated with DNA hypermethylation in acute myeloid leukemia.

Scalea S, Maresca C, Catalanotto C, Marino R, Cogoni C, Reale A, Zampieri M, Zardo G.

FEBS J. 2019 Oct 9. doi: 10.1111/febs.15086. [Epub ahead of print]


Regulatory mechanisms underlying coordination of amino acid and glucose catabolism in Escherichia coli.

Zampieri M, Hörl M, Hotz F, Müller NF, Sauer U.

Nat Commun. 2019 Jul 26;10(1):3354. doi: 10.1038/s41467-019-11331-5.


Metabolomics-Driven Exploration of the Chemical Drug Space to Predict Combination Antimicrobial Therapies.

Campos AI, Zampieri M.

Mol Cell. 2019 Jun 20;74(6):1291-1303.e6. doi: 10.1016/j.molcel.2019.04.001. Epub 2019 Apr 29.


Metabolic profiling of cancer cells reveals genome-wide crosstalk between transcriptional regulators and metabolism.

Ortmayr K, Dubuis S, Zampieri M.

Nat Commun. 2019 Apr 23;10(1):1841. doi: 10.1038/s41467-019-09695-9.


Histone Modifications Drive Aberrant Notch3 Expression/Activity and Growth in T-ALL.

Tottone L, Zhdanovskaya N, Carmona Pestaña Á, Zampieri M, Simeoni F, Lazzari S, Ruocco V, Pelullo M, Caiafa P, Felli MP, Checquolo S, Bellavia D, Talora C, Screpanti I, Palermo R.

Front Oncol. 2019 Apr 3;9:198. doi: 10.3389/fonc.2019.00198. eCollection 2019.


Concurrent climate extremes in the key wheat producing regions of the world.

Toreti A, Cronie O, Zampieri M.

Sci Rep. 2019 Apr 2;9(1):5493. doi: 10.1038/s41598-019-41932-5.


Using reanalysis in crop monitoring and forecasting systems.

Toreti A, Maiorano A, De Sanctis G, Webber H, Ruane AC, Fumagalli D, Ceglar A, Niemeyer S, Zampieri M.

Agric Syst. 2019 Jan;168:144-153. doi: 10.1016/j.agsy.2018.07.001.


A framework for large-scale metabolome drug profiling links coenzyme A metabolism to the toxicity of anti-cancer drug dichloroacetate.

Dubuis S, Ortmayr K, Zampieri M.

Commun Biol. 2018 Aug 3;1:101. doi: 10.1038/s42003-018-0111-x. eCollection 2018.


High-throughput metabolomic analysis predicts mode of action of uncharacterized antimicrobial compounds.

Zampieri M, Szappanos B, Buchieri MV, Trauner A, Piazza I, Picotti P, Gagneux S, Borrell S, Gicquel B, Lelievre J, Papp B, Sauer U.

Sci Transl Med. 2018 Feb 21;10(429). pii: eaal3973. doi: 10.1126/scitranslmed.aal3973.


Land-surface initialisation improves seasonal climate prediction skill for maize yield forecast.

Ceglar A, Toreti A, Prodhomme C, Zampieri M, Turco M, Doblas-Reyes FJ.

Sci Rep. 2018 Jan 22;8(1):1322. doi: 10.1038/s41598-018-19586-6.


DNA methylation dynamics in aging: how far are we from understanding the mechanisms?

Ciccarone F, Tagliatesta S, Caiafa P, Zampieri M.

Mech Ageing Dev. 2018 Sep;174:3-17. doi: 10.1016/j.mad.2017.12.002. Epub 2017 Dec 18. Review.


DNA Hydroxymethylation Levels Are Altered in Blood Cells From Down Syndrome Persons Enrolled in the MARK-AGE Project.

Ciccarone F, Valentini E, Malavolta M, Zampieri M, Bacalini MG, Calabrese R, Guastafierro T, Reale A, Franceschi C, Capri M, Breusing N, Grune T, Moreno-Villanueva M, Bürkle A, Caiafa P.

J Gerontol A Biol Sci Med Sci. 2018 May 9;73(6):737-744. doi: 10.1093/gerona/glx198.


Zinc-Induced Metallothionein in Centenarian Offspring From a Large European Population: The MARK-AGE Project.

Giacconi R, Costarelli L, Piacenza F, Basso A, Bürkle A, Moreno-Villanueva M, Grune T, Weber D, Stuetz W, Gonos ES, Schön C, Grubeck-Loebenstein B, Sikora E, Toussaint O, Debacq-Chainiaux F, Franceschi C, Hervonen A, Slagboom E, Ciccarone F, Zampieri M, Caiafa P, Jansen E, Dollé MET, Breusing N, Mocchegiani E, Malavolta M.

J Gerontol A Biol Sci Med Sci. 2018 May 9;73(6):745-753. doi: 10.1093/gerona/glx192.


Filling quality of the reports of adverse drug reactions received at the Pharmacovigilance Centre of São Paulo (Brazil): missing information hinders the analysis of suspected associations.

Ribeiro A, Lima S, Zampieri ME, Peinado M, Figueras A.

Expert Opin Drug Saf. 2017 Dec;16(12):1329-1334. doi: 10.1080/14740338.2017.1369525. Epub 2017 Aug 23.


Establishment of lactaton rooms in public and private companies: potentialities and difficulties.

Fernandes VMB, Santos EKAD, Erdmann AL, Pires DEP, Zampieri MFM, Gregório VRP.

Rev Gaucha Enferm. 2017 Jun 5;37(spe):e201600446. doi: 10.1590/1983-1447.2016.esp.2016-0046. Portuguese, English.


Nontargeted Metabolomics Reveals the Multilevel Response to Antibiotic Perturbations.

Zampieri M, Zimmermann M, Claassen M, Sauer U.

Cell Rep. 2017 May 9;19(6):1214-1228. doi: 10.1016/j.celrep.2017.04.002.


Metabolic constraints on the evolution of antibiotic resistance.

Zampieri M, Enke T, Chubukov V, Ricci V, Piddock L, Sauer U.

Mol Syst Biol. 2017 Mar 6;13(3):917. doi: 10.15252/msb.20167028.


Genomewide landscape of gene-metabolome associations in Escherichia coli.

Fuhrer T, Zampieri M, Sévin DC, Sauer U, Zamboni N.

Mol Syst Biol. 2017 Jan 16;13(1):907. doi: 10.15252/msb.20167150.


Systematic Analysis of Transcriptional and Post-transcriptional Regulation of Metabolism in Yeast.

Gonçalves E, Raguz Nakic Z, Zampieri M, Wagih O, Ochoa D, Sauer U, Beltrao P, Saez-Rodriguez J.

PLoS Comput Biol. 2017 Jan 10;13(1):e1005297. doi: 10.1371/journal.pcbi.1005297. eCollection 2017 Jan.


Frontiers of high-throughput metabolomics.

Zampieri M, Sekar K, Zamboni N, Sauer U.

Curr Opin Chem Biol. 2017 Feb;36:15-23. doi: 10.1016/j.cbpa.2016.12.006. Epub 2017 Jan 5. Review.


PARP1 orchestrates epigenetic events setting up chromatin domains.

Ciccarone F, Zampieri M, Caiafa P.

Semin Cell Dev Biol. 2017 Mar;63:123-134. doi: 10.1016/j.semcdb.2016.11.010. Epub 2016 Nov 28. Review.


Analysis of the machinery and intermediates of the 5hmC-mediated DNA demethylation pathway in aging on samples from the MARK-AGE Study.

Valentini E, Zampieri M, Malavolta M, Bacalini MG, Calabrese R, Guastafierro T, Reale A, Franceschi C, Hervonen A, Koller B, Bernhardt J, Slagboom PE, Toussaint O, Sikora E, Gonos ES, Breusing N, Grune T, Jansen E, Dollé ME, Moreno-Villanueva M, Sindlinger T, Bürkle A, Ciccarone F, Caiafa P.

Aging (Albany NY). 2016 Aug 29;8(9):1896-1922. doi: 10.18632/aging.101022.


Diagnosis of sphingolipidoses: a new simultaneous measurement of lysosphingolipids by LC-MS/MS.

Polo G, Burlina AP, Kolamunnage TB, Zampieri M, Dionisi-Vici C, Strisciuglio P, Zaninotto M, Plebani M, Burlina AB.

Clin Chem Lab Med. 2017 Mar 1;55(3):403-414. doi: 10.1515/cclm-2016-0340.


Global assessment of heat wave magnitudes from 1901 to 2010 and implications for the river discharge of the Alps.

Zampieri M, Russo S, di Sabatino S, Michetti M, Scoccimarro E, Gualdi S.

Sci Total Environ. 2016 Nov 15;571:1330-9. doi: 10.1016/j.scitotenv.2016.07.008. Epub 2016 Jul 11.


Age-dependent expression of DNMT1 and DNMT3B in PBMCs from a large European population enrolled in the MARK-AGE study.

Ciccarone F, Malavolta M, Calabrese R, Guastafierro T, Bacalini MG, Reale A, Franceschi C, Capri M, Hervonen A, Hurme M, Grubeck-Loebenstein B, Koller B, Bernhardt J, Schӧn C, Slagboom PE, Toussaint O, Sikora E, Gonos ES, Breusing N, Grune T, Jansen E, Dollé M, Moreno-Villanueva M, Sindlinger T, Bürkle A, Zampieri M, Caiafa P.

Aging Cell. 2016 Aug;15(4):755-65. doi: 10.1111/acel.12485. Epub 2016 May 11.


Model-based media selection to minimize the cost of metabolic cooperation in microbial ecosystems.

Zampieri M, Sauer U.

Bioinformatics. 2016 Jun 1;32(11):1733-9. doi: 10.1093/bioinformatics/btw062. Epub 2016 Feb 1.


Poly(ADP-Ribosyl)ation Affects Histone Acetylation and Transcription.

Verdone L, La Fortezza M, Ciccarone F, Caiafa P, Zampieri M, Caserta M.

PLoS One. 2015 Dec 4;10(12):e0144287. doi: 10.1371/journal.pone.0144287. eCollection 2015.


Scaling like behaviour of resistivity observed in LaNiO₃ thin films grown on SrTiO₃ substrate by pulsed laser deposition.

Sergeenkov S, Cichetto L Jr, Zampieri M, Longo E, Araújo-Moreira FM.

J Phys Condens Matter. 2015 Dec 9;27(48):485307. doi: 10.1088/0953-8984/27/48/485307. Epub 2015 Nov 16.


5mC-hydroxylase activity is influenced by the PARylation of TET1 enzyme.

Ciccarone F, Valentini E, Zampieri M, Caiafa P.

Oncotarget. 2015 Sep 15;6(27):24333-47.


PARP inhibitor ABT-888 affects response of MDA-MB-231 cells to doxorubicin treatment, targeting Snail expression.

Mariano G, Ricciardi MR, Trisciuoglio D, Zampieri M, Ciccarone F, Guastafierro T, Calabrese R, Valentini E, Tafuri A, Del Bufalo D, Caiafa P, Reale A.

Oncotarget. 2015 Jun 20;6(17):15008-21.


Dynamic phosphoproteomics reveals TORC1-dependent regulation of yeast nucleotide and amino acid biosynthesis.

Oliveira AP, Ludwig C, Zampieri M, Weisser H, Aebersold R, Sauer U.

Sci Signal. 2015 Apr 28;8(374):rs4. doi: 10.1126/scisignal.2005768.


Reconfiguration of DNA methylation in aging.

Zampieri M, Ciccarone F, Calabrese R, Franceschi C, Bürkle A, Caiafa P.

Mech Ageing Dev. 2015 Nov;151:60-70. doi: 10.1016/j.mad.2015.02.002. Epub 2015 Feb 20. Review.


Large-scale functional analysis of the roles of phosphorylation in yeast metabolic pathways.

Schulz JC, Zampieri M, Wanka S, von Mering C, Sauer U.

Sci Signal. 2014 Nov 25;7(353):rs6. doi: 10.1126/scisignal.2005602.


Observed shift towards earlier spring discharge in the main Alpine rivers.

Zampieri M, Scoccimarro E, Gualdi S, Navarra A.

Sci Total Environ. 2015 Jan 15;503-504:222-32. doi: 10.1016/j.scitotenv.2014.06.036. Epub 2014 Jul 5.


The epigenetic factor BORIS/CTCFL regulates the NOTCH3 gene expression in cancer cells.

Zampieri M, Ciccarone F, Palermo R, Cialfi S, Passananti C, Chiaretti S, Nocchia D, Talora C, Screpanti I, Caiafa P.

Biochim Biophys Acta. 2014 Sep;1839(9):813-25. doi: 10.1016/j.bbagrm.2014.06.017. Epub 2014 Jun 28.


Poly(ADP-ribosyl)ation is involved in the epigenetic control of TET1 gene transcription.

Ciccarone F, Valentini E, Bacalini MG, Zampieri M, Calabrese R, Guastafierro T, Mariano G, Reale A, Franceschi C, Caiafa P.

Oncotarget. 2014 Nov 15;5(21):10356-67.


TET2 gene expression and 5-hydroxymethylcytosine level in multiple sclerosis peripheral blood cells.

Calabrese R, Valentini E, Ciccarone F, Guastafierro T, Bacalini MG, Ricigliano VA, Zampieri M, Annibali V, Mechelli R, Franceschi C, Salvetti M, Caiafa P.

Biochim Biophys Acta. 2014 Jul;1842(7):1130-6. doi: 10.1016/j.bbadis.2014.04.010. Epub 2014 Apr 13.


Clitoral changes, sexuality, and body image during the menstrual cycle: a pilot study.

Morotti E, Battaglia B, Persico N, Zampieri M, Busacchi P, Venturoli S, Battaglia C.

J Sex Med. 2013 May;10(5):1320-7. doi: 10.1111/jsm.12103. Epub 2013 Feb 19.


Body mass index, Stunkard Figure Rating Scale, and sexuality in young Italian women: a pilot study.

Morotti E, Battaglia B, Paradisi R, Persico N, Zampieri M, Venturoli S, Battaglia C.

J Sex Med. 2013 Apr;10(4):1034-43. doi: 10.1111/jsm.12045. Epub 2013 Jan 24.


ADP-ribose polymer depletion leads to nuclear Ctcf re-localization and chromatin rearrangement(1).

Guastafierro T, Catizone A, Calabrese R, Zampieri M, Martella O, Bacalini MG, Reale A, Di Girolamo M, Miccheli M, Farrar D, Klenova E, Ciccarone F, Caiafa P.

Biochem J. 2013 Feb 1;449(3):623-30. doi: 10.1042/BJ20121429.


Poly(ADP-ribosyl)ation acts in the DNA demethylation of mouse primordial germ cells also with DNA damage-independent roles.

Ciccarone F, Klinger FG, Catizone A, Calabrese R, Zampieri M, Bacalini MG, De Felici M, Caiafa P.

PLoS One. 2012;7(10):e46927. doi: 10.1371/journal.pone.0046927. Epub 2012 Oct 5.


Predicting and characterizing selective multiple drug treatments for metabolic diseases and cancer.

Facchetti G, Zampieri M, Altafini C.

BMC Syst Biol. 2012 Aug 29;6:115. doi: 10.1186/1752-0509-6-115.


Why is DNA methylation of Igf2 CpG island shore affected during ageing?

Caiafa P, Zampieri M.

Aging (Albany NY). 2012 Jul;4(7):448-9. No abstract available.


Detection of transcriptional triggers in the dynamics of microbial growth: application to the respiratorily versatile bacterium Shewanella oneidensis.

Beg QK, Zampieri M, Klitgord N, Collins SB, Altafini C, Serres MH, Segrè D.

Nucleic Acids Res. 2012 Aug;40(15):7132-49. doi: 10.1093/nar/gks467. Epub 2012 May 25.


Multidimensional optimality of microbial metabolism.

Schuetz R, Zamboni N, Zampieri M, Heinemann M, Sauer U.

Science. 2012 May 4;336(6081):601-4. doi: 10.1126/science.1216882.


A system-level approach for deciphering the transcriptional response to prion infection.

Zampieri M, Legname G, Segrè D, Altafini C.

Bioinformatics. 2011 Dec 15;27(24):3407-14. doi: 10.1093/bioinformatics/btr580. Epub 2011 Oct 20.


ADP-ribose polymers localized on Ctcf-Parp1-Dnmt1 complex prevent methylation of Ctcf target sites.

Zampieri M, Guastafierro T, Calabrese R, Ciccarone F, Bacalini MG, Reale A, Perilli M, Passananti C, Caiafa P.

Biochem J. 2012 Jan 15;441(2):645-52. doi: 10.1042/BJ20111417.


Methylation-dependent PAD2 upregulation in multiple sclerosis peripheral blood.

Calabrese R, Zampieri M, Mechelli R, Annibali V, Guastafierro T, Ciccarone F, Coarelli G, Umeton R, Salvetti M, Caiafa P.

Mult Scler. 2012 Mar;18(3):299-304. doi: 10.1177/1352458511421055. Epub 2011 Aug 30.


Adaptation as a genome-wide autoregulatory principle in the stress response of yeast.

De Palo G, Eduati F, Zampieri M, Di Camillo B, Toffolo G, Altafini C.

IET Syst Biol. 2011 Jul;5(4):269-79. doi: 10.1049/iet-syb.2009.0050.


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