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Items: 34


Genome Sequences of Actinobacteria from Extreme Environments in Colombia.

Cantillo A, Shapiro N, Woyke T, Kyrpides NC, Baena S, Zambrano MM.

Microbiol Resour Announc. 2018 Dec 6;7(22). pii: e01384-18. doi: 10.1128/MRA.01384-18. eCollection 2018 Dec.


Correction to: Microbial diversity of saline environments: searching for cytotoxic activities.

Díaz-Cárdenas C, Cantillo A, Rojas LY, Sandoval T, Fiorentino S, Robles J, Ramos FA, Zambrano MM, Baena S.

AMB Express. 2018 Mar 9;8(1):35. doi: 10.1186/s13568-018-0561-z.


Microbial diversity of saline environments: searching for cytotoxic activities.

Díaz-Cárdenas C, Cantillo A, Rojas LY, Sandoval T, Fiorentino S, Robles J, Ramos FA, Zambrano MM, Baena S.

AMB Express. 2017 Dec 22;7(1):223. doi: 10.1186/s13568-017-0527-6. Erratum in: AMB Express. 2018 Mar 9;8(1):35.


Compartmentalized metabolic network reconstruction of microbial communities to determine the effect of agricultural intervention on soils.

Alvarez-Silva MC, Álvarez-Yela AC, Gómez-Cano F, Zambrano MM, Husserl J, Danies G, Restrepo S, González-Barrios AF.

PLoS One. 2017 Aug 2;12(8):e0181826. doi: 10.1371/journal.pone.0181826. eCollection 2017.


In vitro and in silico characterization of metagenomic soil-derived cellulases capable of hydrolyzing oil palm empty fruit bunch.

Medina LMP, Ardila DC, Zambrano MM, Restrepo S, Barrios AFG.

Biotechnol Rep (Amst). 2017 Jun 10;15:55-62. doi: 10.1016/j.btre.2017.06.003. eCollection 2017 Sep.


Mining lipolytic enzymes in community DNA from high Andean soils using a targeted approach.

Borda-Molina D, Montaña JS, Zambrano MM, Baena S.

Antonie Van Leeuwenhoek. 2017 Aug;110(8):1035-1051. doi: 10.1007/s10482-017-0877-8. Epub 2017 May 18.


Mycofier: a new machine learning-based classifier for fungal ITS sequences.

Delgado-Serrano L, Restrepo S, Bustos JR, Zambrano MM, Anzola JM.

BMC Res Notes. 2016 Aug 11;9(1):402. doi: 10.1186/s13104-016-2203-3.


Microbial and Functional Diversity within the Phyllosphere of Espeletia Species in an Andean High-Mountain Ecosystem.

Ruiz-Pérez CA, Restrepo S, Zambrano MM.

Appl Environ Microbiol. 2016 Jan 8;82(6):1807-1817. doi: 10.1128/AEM.02781-15.


Development of a genetic tool for functional screening of anti-malarial bioactive extracts in metagenomic libraries.

Mongui A, Pérez-Llanos FJ, Yamamoto MM, Lozano M, Zambrano MM, Del Portillo P, Fernández-Becerra C, Restrepo S, Del Portillo HA, Junca H.

Malar J. 2015 Jun 4;14:233. doi: 10.1186/s12936-015-0748-6.


Klebsiella pneumoniae yfiRNB operon affects biofilm formation, polysaccharide production and drug susceptibility.

Huertas MG, Zárate L, Acosta IC, Posada L, Cruz DP, Lozano M, Zambrano MM.

Microbiology. 2014 Dec;160(Pt 12):2595-606. doi: 10.1099/mic.0.081992-0. Epub 2014 Sep 26.


Respiratory tract clinical sample selection for microbiota analysis in patients with pulmonary tuberculosis.

Botero LE, Delgado-Serrano L, Cepeda ML, Bustos JR, Anzola JM, Del Portillo P, Robledo J, Zambrano MM.

Microbiome. 2014 Aug 25;2:29. doi: 10.1186/2049-2618-2-29. eCollection 2014.


Global adaptation to a lipid environment triggers the dormancy-related phenotype of Mycobacterium tuberculosis.

Rodríguez JG, Hernández AC, Helguera-Repetto C, Aguilar Ayala D, Guadarrama-Medina R, Anzóla JM, Bustos JR, Zambrano MM, González-Y-Merchand J, García MJ, Del Portillo P.

MBio. 2014 May 20;5(3):e01125-14. doi: 10.1128/mBio.01125-14. Erratum in: MBio. 2015;6(1):e02373-14.


Neotropical Andes hot springs harbor diverse and distinct planktonic microbial communities.

Delgado-Serrano L, López G, Bohorquez LC, Bustos JR, Rubiano C, Osorio-Forero C, Junca H, Baena S, Zambrano MM.

FEMS Microbiol Ecol. 2014 Jul;89(1):56-66. doi: 10.1111/1574-6941.12333. Epub 2014 Apr 29.


Exploration of noncoding sequences in metagenomes.

Tobar-Tosse F, Rodríguez AC, Vélez PE, Zambrano MM, Moreno PA.

PLoS One. 2013;8(3):e59488. doi: 10.1371/journal.pone.0059488. Epub 2013 Mar 25.


Structural and functional insights from the metagenome of an acidic hot spring microbial planktonic community in the Colombian Andes.

Jiménez DJ, Andreote FD, Chaves D, Montaña JS, Osorio-Forero C, Junca H, Zambrano MM, Baena S.

PLoS One. 2012;7(12):e52069. doi: 10.1371/journal.pone.0052069. Epub 2012 Dec 14.


Proteorhodopsin-like genes present in thermoacidophilic high-mountain microbial communities.

Bohorquez LC, Ruiz-Pérez CA, Zambrano MM.

Appl Environ Microbiol. 2012 Nov;78(21):7813-7. doi: 10.1128/AEM.01683-12. Epub 2012 Aug 31.


Comparative analysis of diguanylate cyclase and phosphodiesterase genes in Klebsiella pneumoniae.

Cruz DP, Huertas MG, Lozano M, Zárate L, Zambrano MM.

BMC Microbiol. 2012 Jul 9;12:139. doi: 10.1186/1471-2180-12-139.


IS-seq: a novel high throughput survey of in vivo IS6110 transposition in multiple Mycobacterium tuberculosis genomes.

Reyes A, Sandoval A, Cubillos-Ruiz A, Varley KE, Hernández-Neuta I, Samper S, Martín C, García MJ, Ritacco V, López L, Robledo J, Zambrano MM, Mitra RD, Del Portillo P.

BMC Genomics. 2012 Jun 15;13:249. doi: 10.1186/1471-2164-13-249.


In-depth characterization via complementing culture-independent approaches of the microbial community in an acidic hot spring of the Colombian Andes.

Bohorquez LC, Delgado-Serrano L, López G, Osorio-Forero C, Klepac-Ceraj V, Kolter R, Junca H, Baena S, Zambrano MM.

Microb Ecol. 2012 Jan;63(1):103-15. doi: 10.1007/s00248-011-9943-3. Epub 2011 Sep 27. Erratum in: Microb Ecol. 2012 Jan;63(1):238.


[Comparative analysis of six Mycobacterium tuberculosis complex genomes].

Chaves D, Sandoval A, Rodríguez L, García JC, Restrepo S, Zambrano MM.

Biomedica. 2010 Jan-Mar;30(1):23-31. Spanish.


Genomic signatures of the haarlem lineage of Mycobacterium tuberculosis: implications of strain genetic variation in drug and vaccine development.

Cubillos-Ruiz A, Sandoval A, Ritacco V, López B, Robledo J, Correa N, Hernandez-Neuta I, Zambrano MM, Del Portillo P.

J Clin Microbiol. 2010 Oct;48(10):3614-23. doi: 10.1128/JCM.00157-10. Epub 2010 Jul 14.


[Distribution of potentially nitrogen-fixing bacteria and its relationship with physicochemical parameters in soils with three vegetation types in the southern Colombian Amazon region].

Mantilla-Paredes AJ, Cardona GI, Peña-Venegas CP, Murcia U, Rodríguez M, Zambrano MM.

Rev Biol Trop. 2009 Dec;57(4):915-27. Spanish.


Computational biology in Colombia.

Restrepo S, Pinzón A, Rodríguez-R LM, Sierra R, Grajales A, Bernal A, Barreto E, Moreno PA, Zambrano MM, Cristancho M, González A, Castro H.

PLoS Comput Biol. 2009 Oct;5(10):e1000535. doi: 10.1371/journal.pcbi.1000535. Epub 2009 Oct 30. Review. No abstract available. Erratum in: PLoS Comput Biol. 2009 Oct;5(11). doi: 10.1371/annotation/35cba0b0-056a-4dd9-9b67-680d4bc69243.


Analysis of the genetic variation in Mycobacterium tuberculosis strains by multiple genome alignments.

Cubillos-Ruiz A, Morales J, Zambrano MM.

BMC Res Notes. 2008 Nov 7;1:110. doi: 10.1186/1756-0500-1-110.


Rv3134c/devR/devS operon of Mycobacterium bovis BCG is differentially transcribed under "in vitro" stress conditions.

Rodriguez JG, Burbano CS, Nuñez C, González CE, Zambrano MM, García MJ, Del Portillo P.

Tuberculosis (Edinb). 2008 Jul;88(4):273-82. doi: 10.1016/ Epub 2008 Feb 1.


Mutations in DNA repair genes are associated with the Haarlem lineage of Mycobacterium tuberculosis independently of their antibiotic resistance.

Olano J, López B, Reyes A, Lemos MP, Correa N, Del Portillo P, Barrera L, Robledo J, Ritacco V, Zambrano MM.

Tuberculosis (Edinb). 2007 Nov;87(6):502-8. Epub 2007 Oct 4.


[Genes involved in fimbrial biogenesis affect biofilm formation in Klebsiella pneumoniae].

Suescún AV, Cubillos JR, Zambrano MM.

Biomedica. 2006 Dec;26(4):528-37. Spanish.


Sugarcane cellulose utilization by a defined microbial consortium.

Guevara C, Zambrano MM.

FEMS Microbiol Lett. 2006 Feb;255(1):52-8.


Mycobacterial biofilms: a greasy way to hold it together.

Zambrano MM, Kolter R.

Cell. 2005 Dec 2;123(5):762-4.


GASPing for life in stationary phase.

Zambrano MM, Kolter R.

Cell. 1996 Jul 26;86(2):181-4. Review. No abstract available.


Microbial competition: Escherichia coli mutants that take over stationary phase cultures.

Zambrano MM, Siegele DA, Almirón M, Tormo A, Kolter R.

Science. 1993 Mar 19;259(5102):1757-60.


Stationary-phase-inducible "gearbox" promoters: differential effects of katF mutations and role of sigma 70.

Bohannon DE, Connell N, Keener J, Tormo A, Espinosa-Urgel M, Zambrano MM, Kolter R.

J Bacteriol. 1991 Jul;173(14):4482-92.

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