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Items: 31

1.

Peroxisomes: new insights into protein sorting, dynamics, quality control, signalling and roles in health and disease.

Costello JL, Zalckvar E, Kemp S, di Cara F, Kim PK, Linka N, van der Klei IJ.

Histochem Cell Biol. 2019 Apr;151(4):283-289. doi: 10.1007/s00418-019-01780-w. Epub 2019 Mar 29. No abstract available.

PMID:
30927066
2.

An alternative membrane topology permits lipid droplet localization of peroxisomal fatty acyl-CoA reductase 1.

Exner T, Romero-Brey I, Yifrach E, Rivera-Monroy J, Schrul B, Zouboulis CC, Stremmel W, Honsho M, Bartenschlager R, Zalckvar E, Poppelreuther M, Füllekrug J.

J Cell Sci. 2019 Mar 18;132(6). pii: jcs223016. doi: 10.1242/jcs.223016.

3.

Author Correction: Genome-wide SWAp-Tag yeast libraries for proteome exploration.

Weill U, Yofe I, Sass E, Stynen B, Davidi D, Natarajan J, Ben-Menachem R, Avihou Z, Goldman O, Harpaz N, Chuartzman S, Kniazev K, Knoblach B, Laborenz J, Boos F, Kowarzyk J, Ben-Dor S, Zalckvar E, Herrmann JM, Rachubinski RA, Pines O, Rapaport D, Michnick SW, Levy ED, Schuldiner M.

Nat Methods. 2019 Feb;16(2):205. doi: 10.1038/s41592-018-0297-3.

PMID:
30602782
4.

Defining the Mammalian Peroxisomal Proteome.

Yifrach E, Fischer S, Oeljeklaus S, Schuldiner M, Zalckvar E, Warscheid B.

Subcell Biochem. 2018;89:47-66. doi: 10.1007/978-981-13-2233-4_2. Review.

PMID:
30378018
5.

Functional Analyses of a Putative, Membrane-Bound, Peroxisomal Protein Import Mechanism from the Apicomplexan Protozoan Toxoplasma gondii.

Mbekeani AJ, Stanley WA, Kalel VC, Dahan N, Zalckvar E, Sheiner L, Schliebs W, Erdmann R, Pohl E, Denny PW.

Genes (Basel). 2018 Aug 29;9(9). pii: E434. doi: 10.3390/genes9090434.

6.

Validation of a yeast malate dehydrogenase 2 (Mdh2) antibody tested for use in western blots.

Gabay-Maskit S, Schuldiner M, Zalckvar E.

Version 2. F1000Res. 2018 Jan 31 [revised 2018 Jan 1];7:130. doi: 10.12688/f1000research.13396.2. eCollection 2018.

7.

Genome-wide SWAp-Tag yeast libraries for proteome exploration.

Weill U, Yofe I, Sass E, Stynen B, Davidi D, Natarajan J, Ben-Menachem R, Avihou Z, Goldman O, Harpaz N, Chuartzman S, Kniazev K, Knoblach B, Laborenz J, Boos F, Kowarzyk J, Ben-Dor S, Zalckvar E, Herrmann JM, Rachubinski RA, Pines O, Rapaport D, Michnick SW, Levy ED, Schuldiner M.

Nat Methods. 2018 Aug;15(8):617-622. doi: 10.1038/s41592-018-0044-9. Epub 2018 Jul 9. Erratum in: Nat Methods. 2019 Feb;16(2):205.

8.

Systematic mapping of contact sites reveals tethers and a function for the peroxisome-mitochondria contact.

Shai N, Yifrach E, van Roermund CWT, Cohen N, Bibi C, IJlst L, Cavellini L, Meurisse J, Schuster R, Zada L, Mari MC, Reggiori FM, Hughes AL, Escobar-Henriques M, Cohen MM, Waterham HR, Wanders RJA, Schuldiner M, Zalckvar E.

Nat Commun. 2018 May 2;9(1):1761. doi: 10.1038/s41467-018-03957-8.

9.

Mind the Organelle Gap - Peroxisome Contact Sites in Disease.

Castro IG, Schuldiner M, Zalckvar E.

Trends Biochem Sci. 2018 Mar;43(3):199-210. doi: 10.1016/j.tibs.2018.01.001. Epub 2018 Jan 31. Review.

10.

Saccharomyces cerevisiae cells lacking Pex3 contain membrane vesicles that harbor a subset of peroxisomal membrane proteins.

Wróblewska JP, Cruz-Zaragoza LD, Yuan W, Schummer A, Chuartzman SG, de Boer R, Oeljeklaus S, Schuldiner M, Zalckvar E, Warscheid B, Erdmann R, van der Klei IJ.

Biochim Biophys Acta Mol Cell Res. 2017 Oct;1864(10):1656-1667. doi: 10.1016/j.bbamcr.2017.05.021. Epub 2017 May 26.

11.

Peroxisome Mini-Libraries: Systematic Approaches to Study Peroxisomes Made Easy.

Dahan N, Schuldiner M, Zalckvar E.

Methods Mol Biol. 2017;1595:305-318. doi: 10.1007/978-1-4939-6937-1_28.

PMID:
28409473
12.

Incredibly close-A newly identified peroxisome-ER contact site in humans.

Schuldiner M, Zalckvar E.

J Cell Biol. 2017 Feb;216(2):287-289. doi: 10.1083/jcb.201701072. Epub 2017 Jan 20.

13.

Pex35 is a regulator of peroxisome abundance.

Yofe I, Soliman K, Chuartzman SG, Morgan B, Weill U, Yifrach E, Dick TP, Cooper SJ, Ejsing CS, Schuldiner M, Zalckvar E, Thoms S.

J Cell Sci. 2017 Feb 15;130(4):791-804. doi: 10.1242/jcs.187914. Epub 2017 Jan 3.

14.

Characterization of proteome dynamics during growth in oleate reveals a new peroxisome-targeting receptor.

Yifrach E, Chuartzman SG, Dahan N, Maskit S, Zada L, Weill U, Yofe I, Olender T, Schuldiner M, Zalckvar E.

J Cell Sci. 2016 Nov 1;129(21):4067-4075. Epub 2016 Sep 23.

15.

One library to make them all: streamlining the creation of yeast libraries via a SWAp-Tag strategy.

Yofe I, Weill U, Meurer M, Chuartzman S, Zalckvar E, Goldman O, Ben-Dor S, Schütze C, Wiedemann N, Knop M, Khmelinskii A, Schuldiner M.

Nat Methods. 2016 Apr;13(4):371-378. doi: 10.1038/nmeth.3795. Epub 2016 Feb 29.

16.

No peroxisome is an island - Peroxisome contact sites.

Shai N, Schuldiner M, Zalckvar E.

Biochim Biophys Acta. 2016 May;1863(5):1061-9. doi: 10.1016/j.bbamcr.2015.09.016. Epub 2015 Sep 16. Review.

17.

Corrigendum: Unraveling determinants of transcription factor binding outside the core binding site.

Levo M, Zalckvar E, Sharon E, Dantas Machado AC, Kalma Y, Lotan-Pompan M, Weinberger A, Yakhini Z, Rohs R, Segal E.

Genome Res. 2015 Sep;25(9):1410.2. No abstract available.

18.

Unraveling determinants of transcription factor binding outside the core binding site.

Levo M, Zalckvar E, Sharon E, Dantas Machado AC, Kalma Y, Lotam-Pompan M, Weinberger A, Yakhini Z, Rohs R, Segal E.

Genome Res. 2015 Jul;25(7):1018-29. doi: 10.1101/gr.185033.114. Epub 2015 Mar 11. Erratum in: Genome Res. 2015 Sep;25(9):1410.2.

19.

Peroxisystem: harnessing systems cell biology to study peroxisomes.

Schuldiner M, Zalckvar E.

Biol Cell. 2015 Apr;107(4):89-97. doi: 10.1111/boc.201400091. Epub 2015 Feb 18. Review.

PMID:
25571902
20.

The yeast oligopeptide transporter Opt2 is localized to peroxisomes and affects glutathione redox homeostasis.

Elbaz-Alon Y, Morgan B, Clancy A, Amoako TN, Zalckvar E, Dick TP, Schwappach B, Schuldiner M.

FEMS Yeast Res. 2014 Nov;14(7):1055-67. doi: 10.1111/1567-1364.12196. Epub 2014 Sep 22.

21.

Peroxisomes are juxtaposed to strategic sites on mitochondria.

Cohen Y, Klug YA, Dimitrov L, Erez Z, Chuartzman SG, Elinger D, Yofe I, Soliman K, Gärtner J, Thoms S, Schekman R, Elbaz-Alon Y, Zalckvar E, Schuldiner M.

Mol Biosyst. 2014 Jul;10(7):1742-8. doi: 10.1039/c4mb00001c. Epub 2014 Apr 10.

PMID:
24722918
22.

Nucleosome maps of the human cytomegalovirus genome reveal a temporal switch in chromatin organization linked to a major IE protein.

Zalckvar E, Paulus C, Tillo D, Asbach-Nitzsche A, Lubling Y, Winterling C, Strieder N, Mücke K, Goodrum F, Segal E, Nevels M.

Proc Natl Acad Sci U S A. 2013 Aug 6;110(32):13126-31. doi: 10.1073/pnas.1305548110. Epub 2013 Jul 22.

23.

ANAT: a tool for constructing and analyzing functional protein networks.

Yosef N, Zalckvar E, Rubinstein AD, Homilius M, Atias N, Vardi L, Berman I, Zur H, Kimchi A, Ruppin E, Sharan R.

Sci Signal. 2011 Oct 25;4(196):pl1. doi: 10.1126/scisignal.2001935.

PMID:
22028466
24.

The road not taken: a systems level strategy for analyzing the cell death network.

Zalckvar E, Bialik S, Kimchi A.

Autophagy. 2010 Aug;6(6):813-5. doi: 10.1038/cdd.2010.7. Epub 2010 Aug 4.

PMID:
20574161
25.

Systems biology analysis of programmed cell death.

Bialik S, Zalckvar E, Ber Y, Rubinstein AD, Kimchi A.

Trends Biochem Sci. 2010 Oct;35(10):556-64. doi: 10.1016/j.tibs.2010.04.008. Epub 2010 May 28. Review.

PMID:
20537543
26.

A systems level strategy for analyzing the cell death network: implication in exploring the apoptosis/autophagy connection.

Zalckvar E, Yosef N, Reef S, Ber Y, Rubinstein AD, Mor I, Sharan R, Ruppin E, Kimchi A.

Cell Death Differ. 2010 Aug;17(8):1244-53. doi: 10.1038/cdd.2010.7. Epub 2010 Feb 12.

27.

Phosphorylation of Beclin 1 by DAP-kinase promotes autophagy by weakening its interactions with Bcl-2 and Bcl-XL.

Zalckvar E, Berissi H, Eisenstein M, Kimchi A.

Autophagy. 2009 Jul;5(5):720-2. Epub 2009 Jul 2.

PMID:
19395874
28.

Toward accurate reconstruction of functional protein networks.

Yosef N, Ungar L, Zalckvar E, Kimchi A, Kupiec M, Ruppin E, Sharan R.

Mol Syst Biol. 2009;5:248. doi: 10.1038/msb.2009.3. Epub 2009 Mar 17.

29.

DAP-kinase-mediated phosphorylation on the BH3 domain of beclin 1 promotes dissociation of beclin 1 from Bcl-XL and induction of autophagy.

Zalckvar E, Berissi H, Mizrachy L, Idelchuk Y, Koren I, Eisenstein M, Sabanay H, Pinkas-Kramarski R, Kimchi A.

EMBO Rep. 2009 Mar;10(3):285-92. doi: 10.1038/embor.2008.246. Epub 2009 Jan 30.

30.

Self-eating and self-killing: crosstalk between autophagy and apoptosis.

Maiuri MC, Zalckvar E, Kimchi A, Kroemer G.

Nat Rev Mol Cell Biol. 2007 Sep;8(9):741-52. Review.

PMID:
17717517
31.

A short mitochondrial form of p19ARF induces autophagy and caspase-independent cell death.

Reef S, Zalckvar E, Shifman O, Bialik S, Sabanay H, Oren M, Kimchi A.

Mol Cell. 2006 May 19;22(4):463-75.

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