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Items: 22

1.

Identification, functional and structural characterization of novel aminoglycoside phosphotransferase APH(3″)-Id from Streptomyces rimosus subsp. rimosus ATCC 10970.

Alekseeva MG, Boyko KM, Nikolaeva AY, Mavletova DA, Rudakova NN, Zakharevich NV, Korzhenevskiy DA, Ziganshin RH, Popov VO, Danilenko VN.

Arch Biochem Biophys. 2019 Aug 15;671:111-122. doi: 10.1016/j.abb.2019.06.008. Epub 2019 Jun 26.

PMID:
31251922
2.

Employing toxin-antitoxin genome markers for identification of Bifidobacterium and Lactobacillus strains in human metagenomes.

Klimina KM, Kasianov AS, Poluektova EU, Emelyanov KV, Voroshilova VN, Zakharevich NV, Kudryavtseva AV, Makeev VJ, Danilenko VN.

PeerJ. 2019 Mar 4;7:e6554. doi: 10.7717/peerj.6554. eCollection 2019.

3.

Draft Genome Sequence of Streptomyces xinghaiensis (fradiae) OlgR, a Strain Resistant to Oligomycin A.

Bekker OB, Vatlin AA, Zakharevich NV, Lysenkova LN, Shchekotikhin AE, Danilenko VN.

Microbiol Resour Announc. 2019 Jan 10;8(2). pii: e01531-18. doi: 10.1128/MRA.01531-18. eCollection 2019 Jan.

4.

Species-specific serine-threonine protein kinase Pkb2 of Bifidobacterium longum subsp. longum: Genetic environment and substrate specificity.

Nezametdinova VZ, Mavletova DA, Alekseeva MG, Chekalina MS, Zakharevich NV, Danilenko VN.

Anaerobe. 2018 Jun;51:26-35. doi: 10.1016/j.anaerobe.2018.03.003. Epub 2018 Mar 10.

PMID:
29534913
5.

Structural characterization of the novel aminoglycoside phosphotransferase AphVIII from Streptomyces rimosus with enzymatic activity modulated by phosphorylation.

Boyko KM, Gorbacheva MA, Korzhenevskiy DA, Alekseeva MG, Mavletova DA, Zakharevich NV, Elizarov SM, Rudakova NN, Danilenko VN, Popov VO.

Biochem Biophys Res Commun. 2016 Sep 2;477(4):595-601. doi: 10.1016/j.bbrc.2016.06.097. Epub 2016 Jun 20.

PMID:
27338640
6.

Mycobacterium tuberculosis Type II Toxin-Antitoxin Systems: Genetic Polymorphisms and Functional Properties and the Possibility of Their Use for Genotyping.

Zaychikova MV, Zakharevich NV, Sagaidak MO, Bogolubova NA, Smirnova TG, Andreevskaya SN, Larionova EE, Alekseeva MG, Chernousova LN, Danilenko VN.

PLoS One. 2015 Dec 14;10(12):e0143682. doi: 10.1371/journal.pone.0143682. eCollection 2015.

7.

Draft Genome Sequences of Two Pyrazinamide-Resistant Clinical Isolates, Mycobacterium tuberculosis 13-4152 and 13-2459.

Maslov DA, Shur KV, Bekker OB, Zakharevich NV, Zaichikova MV, Klimina KM, Smirnova TG, Zhang Y, Chernousova LN, Danilenko VN.

Genome Announc. 2015 Jul 2;3(4). pii: e00758-15. doi: 10.1128/genomeA.00758-15.

8.

Draft Genome Sequences of Bifidobacterium angulatum GT102 and Bifidobacterium adolescentis 150: Focusing on the Genes Potentially Involved in the Gut-Brain Axis.

Dyachkova MS, Klimina KM, Kovtun AS, Zakharevich NV, Nezametdinova VZ, Averina OV, Danilenko VN.

Genome Announc. 2015 Jul 2;3(4). pii: e00709-15. doi: 10.1128/genomeA.00709-15.

9.

Draft Genome Sequence of Mycobacterium tuberculosis Strain E186hv of Beijing B0/W Lineage with Reduced Virulence.

Shur KV, Klimina KM, Zakharevich NV, Maslov DA, Bekker OB, Zaychikova MV, Kamaev EY, Kravchenko MA, Skornyakov SN, Zhang Y, Danilenko VN.

Genome Announc. 2015 May 7;3(3). pii: e00403-15. doi: 10.1128/genomeA.00403-15.

10.

Complete Genome Sequence of Bifidobacterium longum GT15: Identification and Characterization of Unique and Global Regulatory Genes.

Zakharevich NV, Averina OV, Klimina KM, Kudryavtseva AV, Kasianov AS, Makeev VJ, Danilenko VN.

Microb Ecol. 2015 Oct;70(3):819-34. doi: 10.1007/s00248-015-0603-x. Epub 2015 Apr 17.

PMID:
25894918
11.

Draft Genome Sequences of Lactobacillus plantarum Strain 90sk and Lactobacillus brevis Strain 15f: Focusing on Neurotransmitter Genes.

Yunes RA, Klimina KM, Emelyanov KV, Zakharevich NV, Poluektova EU, Danilenko VN.

Genome Announc. 2015 Apr 16;3(2). pii: e00261-15. doi: 10.1128/genomeA.00261-15.

12.

FoF1-ATP synthase of Streptomyces fradiae ATCC 19609: structural, biochemical, and functional characterization.

Alekseeva MG, Mironcheva TA, Mavletova DA, Elizarov SM, Zakharevich NV, Danilenko VN.

Biochemistry (Mosc). 2015 Mar;80(3):296-309. doi: 10.1134/S0006297915030050.

13.

Complete Genome Sequence of Bifidobacterium longum GT15: Unique Genes for Russian Strains.

Zakharevich NV, Averina OV, Klimina KM, Kudryavtseva AV, Kasianov AS, Makeev VJ, Danilenko VN.

Genome Announc. 2014 Dec 18;2(6). pii: e01348-14. doi: 10.1128/genomeA.01348-14.

14.

Draft Genome Sequence of Streptomyces fradiae ATCC 19609, a Strain Highly Sensitive to Antibiotics.

Bekker OB, Klimina KM, Vatlin AA, Zakharevich NV, Kasianov AS, Danilenko VN.

Genome Announc. 2014 Dec 4;2(6). pii: e01247-14. doi: 10.1128/genomeA.01247-14.

15.

Identification and characterization of the serine/threonine protein kinases in Bifidobacterium.

Nezametdinova VZ, Zakharevich NV, Alekseeva MG, Averina OV, Mavletova DA, Danilenko VN.

Arch Microbiol. 2014 Feb;196(2):125-36. doi: 10.1007/s00203-013-0949-8. Epub 2014 Jan 7.

PMID:
24395073
16.

Identification and characterization of WhiB-like family proteins of the Bifidobacterium genus.

Averina OV, Zakharevich NV, Danilenko VN.

Anaerobe. 2012 Aug;18(4):421-9. doi: 10.1016/j.anaerobe.2012.04.011. Epub 2012 May 15.

PMID:
22609519
17.

[The Pim family of protein kinases: structure, functions and roles in hematopoietic malignancies].

Zhukova IuN, Alekseeva MG, Zakharevich NV, Shtil' AA, Danilenko VN.

Mol Biol (Mosk). 2011 Sep-Oct;45(5):755-64. Review. Russian.

PMID:
22393773
18.

Signatures of the ATP-binding pocket as a basis for structural classification of the serine/threonine protein kinases of gram-positive bacteria.

Zakharevich NV, Osolodkin DI, Artamonova II, Palyulin VA, Zefirov NS, Danilenko VN.

Proteins. 2012 May;80(5):1363-76. doi: 10.1002/prot.24032. Epub 2012 Feb 13.

PMID:
22275035
19.

[ Antibiotic resistance of potential probiotic bacteria of the genus Lactobacillus from human gastrointestinal microbiome].

Botina SG, Poluéktova EU, Glazkova AA, Zakharevich NV, Koroban NV, Zinchenko VV, Babykin MM, Zhilenkova OG, Amerkhanova AM, Danilenko VN.

Mikrobiologiia. 2011 Mar-Apr;80(2):175-83. Russian. No abstract available.

PMID:
21774182
20.

[Genetic diversity of the genus Lactobacillus bacteria from the human gastrointestinal microbiome].

Botina SG, Koroban NV, Klimina KM, Glazova AA, Zakharevich NV, Zinchenko VV, Danilenko VN.

Genetika. 2010 Dec;46(12):1589-97. Russian.

PMID:
21434412
21.

Bioinformatic analysis of glycogen synthase kinase 3: human versus parasite kinases.

Osolodkin DI, Zakharevich NV, Palyulin VA, Danilenko VN, Zefirov NS.

Parasitology. 2011 May;138(6):725-35. doi: 10.1017/S0031182011000151. Epub 2011 Feb 24.

PMID:
21349219
22.

[The SCAR DNA sequence family is enrichment in the evolution-conserved sequences].

Pepkina MV, Karpova OI, Zakharevich NV, Sizova TV, Bogdanov IuF.

Mol Biol (Mosk). 2008 Mar-Apr;42(2):362-9. Russian.

PMID:
18610845

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