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Items: 1 to 50 of 111

1.

Sensitivity of asymmetric rate-dependent critical systems to initial conditions: Insights into cellular decision making.

Nené NR, Rivington J, Zaikin A.

Phys Rev E. 2018 Aug;98(2-1):022317. doi: 10.1103/PhysRevE.98.022317.

PMID:
30253525
2.

A quantitative performance study of two automatic methods for the diagnosis of ovarian cancer.

Vázquez MA, Mariño IP, Blyuss O, Ryan A, Gentry-Maharaj A, Kalsi J, Manchanda R, Jacobs I, Menon U, Zaikin A.

Biomed Signal Process Control. 2018 Sep;46:86-93. doi: 10.1016/j.bspc.2018.07.001.

3.

Comparison of Longitudinal CA125 Algorithms as a First-Line Screen for Ovarian Cancer in the General Population.

Blyuss O, Burnell M, Ryan A, Gentry-Maharaj A, Mariño IP, Kalsi J, Manchanda R, Timms JF, Parmar M, Skates SJ, Jacobs I, Zaikin A, Menon U.

Clin Cancer Res. 2018 Oct 1;24(19):4726-4733. doi: 10.1158/1078-0432.CCR-18-0208. Epub 2018 Jul 3.

PMID:
30084833
4.

[Subcapsular renal hematomas after ureteroscopic lithotripsy].

Guliev BG, Komyakov BK, Zaikin AY.

Urologiia. 2018 May;(2):34-38. Russian.

PMID:
29901292
5.

Parenclitic networks for predicting ovarian cancer.

Whitwell HJ, Blyuss O, Menon U, Timms JF, Zaikin A.

Oncotarget. 2018 Apr 27;9(32):22717-22726. doi: 10.18632/oncotarget.25216. eCollection 2018 Apr 27.

6.

Current detection rates and time-to-detection of all identifiable BRCA carriers in the Greater London population.

Manchanda R, Blyuss O, Gaba F, Gordeev VS, Jacobs C, Burnell M, Gan C, Taylor R, Turnbull C, Legood R, Zaikin A, Antoniou AC, Menon U, Jacobs I.

J Med Genet. 2018 Aug;55(8):538-545. doi: 10.1136/jmedgenet-2017-105195. Epub 2018 Apr 5.

PMID:
29622727
7.

Multiplexing topologies and time scales: The gains and losses of synchrony.

Makovkin S, Kumar A, Zaikin A, Jalan S, Ivanchenko M.

Phys Rev E. 2017 Nov;96(5-1):052214. doi: 10.1103/PhysRevE.96.052214. Epub 2017 Nov 20.

PMID:
29347745
8.

Mirror node correlations tuning synchronization in multiplex networks.

Kumar A, Baptista MS, Zaikin A, Jalan S.

Phys Rev E. 2017 Dec;96(6-1):062301. doi: 10.1103/PhysRevE.96.062301. Epub 2017 Dec 4.

PMID:
29347340
9.

A comparison of Monte Carlo-based Bayesian parameter estimation methods for stochastic models of genetic networks.

Mariño IP, Zaikin A, Míguez J.

PLoS One. 2017 Aug 10;12(8):e0182015. doi: 10.1371/journal.pone.0182015. eCollection 2017.

10.

Sonographers' self-reported visualization of normal postmenopausal ovaries on transvaginal ultrasound is not reliable: results of expert review of archived images from UKCTOCS.

Stott W, Campbell S, Franchini A, Blyuss O, Zaikin A, Ryan A, Jones C, Gentry-Maharaj A, Fletcher G, Kalsi J, Skates S, Parmar M, Amso N, Jacobs I, Menon U.

Ultrasound Obstet Gynecol. 2018 Mar;51(3):401-408. doi: 10.1002/uog.18836.

11.

Parenclitic Network Analysis of Methylation Data for Cancer Identification.

Karsakov A, Bartlett T, Ryblov A, Meyerov I, Ivanchenko M, Zaikin A.

PLoS One. 2017 Jan 20;12(1):e0169661. doi: 10.1371/journal.pone.0169661. eCollection 2017.

12.

Interplay of degree correlations and cluster synchronization.

Jalan S, Kumar A, Zaikin A, Kurths J.

Phys Rev E. 2016 Dec;94(6-1):062202. doi: 10.1103/PhysRevE.94.062202. Epub 2016 Dec 1.

PMID:
28085396
13.

Aberrant regulation of RANKL/OPG in women at high risk of developing breast cancer.

Kiechl S, Schramek D, Widschwendter M, Fourkala EO, Zaikin A, Jones A, Jaeger B, Rack B, Janni W, Scholz C, Willeit J, Weger S, Mayr A, Teschendorff A, Rosenthal A, Fraser L, Philpott S, Dubeau L, Keshtgar M, Roylance R, Jacobs IJ, Menon U, Schett G, Penninger JM.

Oncotarget. 2017 Jan 17;8(3):3811-3825. doi: 10.18632/oncotarget.14013.

14.

Synthetic biology routes to bio-artificial intelligence.

Nesbeth DN, Zaikin A, Saka Y, Romano MC, Giuraniuc CV, Kanakov O, Laptyeva T.

Essays Biochem. 2016 Nov 30;60(4):381-391. Review.

15.
16.

Open source approaches to establishing Roseobacter clade bacteria as synthetic biology chassis for biogeoengineering.

Borg Y, Grigonyte AM, Boeing P, Wolfenden B, Smith P, Beaufoy W, Rose S, Ratisai T, Zaikin A, Nesbeth DN.

PeerJ. 2016 Jul 7;4:e2031. doi: 10.7717/peerj.2031. eCollection 2016.

17.

Sex hormone measurements using mass spectrometry and sensitive extraction radioimmunoassay and risk of estrogen receptor negative and positive breast cancer: Case control study in UK Collaborative Cancer Trial of Ovarian Cancer Screening (UKCTOCS).

Fourkala EO, Blyuss O, Field H, Gunu R, Ryan A, Barth J, Jacobs I, Zaikin A, Dawnay A, Menon U.

Steroids. 2016 Jun;110:62-69. doi: 10.1016/j.steroids.2016.04.003. Epub 2016 Apr 16.

PMID:
27091764
18.

Systems Medicine of Cancer: Bringing Together Clinical Data and Nonlinear Dynamics of Genetic Networks.

Blyuss KB, Manchanda R, Kurths J, Alsaedi A, Zaikin A.

Comput Math Methods Med. 2016;2016:7904693. doi: 10.1155/2016/7904693. Epub 2016 Jan 11. No abstract available.

19.

Serial Patterns of Ovarian Cancer Biomarkers in a Prediagnosis Longitudinal Dataset.

Blyuss O, Gentry-Maharaj A, Fourkala EO, Ryan A, Zaikin A, Menon U, Jacobs I, Timms JF.

Biomed Res Int. 2015;2015:681416. doi: 10.1155/2015/681416. Epub 2015 Dec 24.

20.

Variations in the Intragene Methylation Profiles Hallmark Induced Pluripotency.

Druzhkov P, Zolotykh N, Meyerov I, Alsaedi A, Shutova M, Ivanchenko M, Zaikin A.

Biomed Res Int. 2015;2015:976362. doi: 10.1155/2015/976362. Epub 2015 Nov 5.

21.

Effect of noise in intelligent cellular decision making.

Bates R, Blyuss O, Alsaedi A, Zaikin A.

PLoS One. 2015 May 12;10(5):e0125079. doi: 10.1371/journal.pone.0125079. eCollection 2015.

22.

Multi-input distributed classifiers for synthetic genetic circuits.

Kanakov O, Kotelnikov R, Alsaedi A, Tsimring L, Huerta R, Zaikin A, Ivanchenko M.

PLoS One. 2015 May 6;10(5):e0125144. doi: 10.1371/journal.pone.0125144. eCollection 2015.

23.

Pattern selection: the importance of "how you get there".

Ashwin P, Zaikin A.

Biophys J. 2015 Mar 24;108(6):1307-1308. doi: 10.1016/j.bpj.2015.01.036. No abstract available.

24.

Leptin induces upregulation of sphingosine kinase 1 in oestrogen receptor-negative breast cancer via Src family kinase-mediated, janus kinase 2-independent pathway.

Alshaker H, Krell J, Frampton AE, Waxman J, Blyuss O, Zaikin A, Winkler M, Stebbing J, Yagüe E, Pchejetski D.

Breast Cancer Res. 2014 Oct 25;16(5):426. doi: 10.1186/s13058-014-0426-6.

25.

Serum CA19-9 is significantly upregulated up to 2 years before diagnosis with pancreatic cancer: implications for early disease detection.

O'Brien DP, Sandanayake NS, Jenkinson C, Gentry-Maharaj A, Apostolidou S, Fourkala EO, Camuzeaux S, Blyuss O, Gunu R, Dawnay A, Zaikin A, Smith RC, Jacobs IJ, Menon U, Costello E, Pereira SP, Timms JF.

Clin Cancer Res. 2015 Feb 1;21(3):622-31. doi: 10.1158/1078-0432.CCR-14-0365. Epub 2014 Jun 17.

26.

Stochastic resonance in an intracellular genetic perceptron.

Bates R, Blyuss O, Zaikin A.

Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Mar;89(3):032716. Epub 2014 Mar 26.

PMID:
24730883
27.

A DNA methylation network interaction measure, and detection of network oncomarkers.

Bartlett TE, Olhede SC, Zaikin A.

PLoS One. 2014 Jan 6;9(1):e84573. doi: 10.1371/journal.pone.0084573. eCollection 2014.

28.

Asymmetry in erythroid-myeloid differentiation switch and the role of timing in a binary cell-fate decision.

Alagha A, Zaikin A.

Front Immunol. 2013 Dec 5;4:426. doi: 10.3389/fimmu.2013.00426. eCollection 2013.

29.

Parameter estimation methods for chaotic intercellular networks.

Mariño IP, Ullner E, Zaikin A.

PLoS One. 2013 Nov 25;8(11):e79892. doi: 10.1371/journal.pone.0079892. eCollection 2013.

30.

The sex hormone system in carriers of BRCA1/2 mutations: a case-control study.

Widschwendter M, Rosenthal AN, Philpott S, Rizzuto I, Fraser L, Hayward J, Intermaggio MP, Edlund CK, Ramus SJ, Gayther SA, Dubeau L, Fourkala EO, Zaikin A, Menon U, Jacobs IJ.

Lancet Oncol. 2013 Nov;14(12):1226-32. doi: 10.1016/S1470-2045(13)70448-0. Epub 2013 Oct 17.

31.

Cancer-associated autoantibodies to MUC1 and MUC4--a blinded case–control study of colorectal cancer in UK collaborative trial of ovarian cancer screening.

Pedersen JW, Gentry-Maharaj A, Nøstdal A, Fourkala EO, Dawnay A, Burnell M, Zaikin A, Burchell J, Papadimitriou JT, Clausen H, Jacobs I, Menon U, Wandall HH.

Int J Cancer. 2014 May 1;134(9):2180-88.

32.

Corruption of the intra-gene DNA methylation architecture is a hallmark of cancer.

Bartlett TE, Zaikin A, Olhede SC, West J, Teschendorff AE, Widschwendter M.

PLoS One. 2013 Jul 16;8(7):e68285. doi: 10.1371/journal.pone.0068285. Print 2013.

33.

Decision making in noisy bistable systems with time-dependent asymmetry.

Nené NR, Zaikin A.

Phys Rev E Stat Nonlin Soft Matter Phys. 2013 Jan;87(1):012715. Epub 2013 Jan 22.

PMID:
23410367
34.

Early detection of cancer in the general population: a blinded case-control study of p53 autoantibodies in colorectal cancer.

Pedersen JW, Gentry-Maharaj A, Fourkala EO, Dawnay A, Burnell M, Zaikin A, Pedersen AE, Jacobs I, Menon U, Wandall HH.

Br J Cancer. 2013 Jan 15;108(1):107-14. doi: 10.1038/bjc.2012.517. Epub 2012 Nov 20.

35.

Carbamate derivatives of indolines as cholinesterase inhibitors and antioxidants for the treatment of Alzheimer's disease.

Yanovsky I, Finkin-Groner E, Zaikin A, Lerman L, Shalom H, Zeeli S, Weill T, Ginsburg I, Nudelman A, Weinstock M.

J Med Chem. 2012 Dec 13;55(23):10700-15. doi: 10.1021/jm301411g. Epub 2012 Nov 28.

PMID:
23151013
36.

Theory of a large thermoelectric effect in superconductors doped with magnetic impurities.

Kalenkov MS, Zaikin AD, Kuzmin LS.

Phys Rev Lett. 2012 Oct 5;109(14):147004. Epub 2012 Oct 4.

PMID:
23083271
37.

Interplay between path and speed in decision making by high-dimensional stochastic gene regulatory networks.

Nené NR, Zaikin A.

PLoS One. 2012;7(7):e40085. doi: 10.1371/journal.pone.0040085. Epub 2012 Jul 16.

38.

Speed-dependent cellular decision making in nonequilibrium genetic circuits.

Nené NR, Garca-Ojalvo J, Zaikin A.

PLoS One. 2012;7(3):e32779. doi: 10.1371/journal.pone.0032779. Epub 2012 Mar 13.

39.

Association of serum sex steroid receptor bioactivity and sex steroid hormones with breast cancer risk in postmenopausal women.

Fourkala EO, Zaikin A, Burnell M, Gentry-Maharaj A, Ford J, Gunu R, Soromani C, Hasenbrink G, Jacobs I, Dawnay A, Widschwendter M, Lichtenberg-Fraté H, Menon U.

Endocr Relat Cancer. 2012 Apr 10;19(2):137-47. doi: 10.1530/ERC-11-0310. Print 2012 Apr.

40.

Triplet superconductivity in a ferromagnetic vortex.

Kalenkov MS, Zaikin AD, Petrashov VT.

Phys Rev Lett. 2011 Aug 19;107(8):087003. Epub 2011 Aug 16.

PMID:
21929197
41.

Fluctuations of persistent current.

Semenov AG, Zaikin AD.

J Phys Condens Matter. 2010 Dec 8;22(48):485302. doi: 10.1088/0953-8984/22/48/485302. Epub 2010 Nov 12.

PMID:
21406742
42.

Network, degeneracy and bow tie. Integrating paradigms and architectures to grasp the complexity of the immune system.

Tieri P, Grignolio A, Zaikin A, Mishto M, Remondini D, Castellani GC, Franceschi C.

Theor Biol Med Model. 2010 Aug 11;7:32. doi: 10.1186/1742-4682-7-32.

43.

The 20S proteasome splicing activity discovered by SpliceMet.

Liepe J, Mishto M, Textoris-Taube K, Janek K, Keller C, Henklein P, Kloetzel PM, Zaikin A.

PLoS Comput Biol. 2010 Jun 24;6(6):e1000830. doi: 10.1371/journal.pcbi.1000830.

44.

Magnetic field and contact resistance dependence of non-local charge imbalance.

Kleine A, Baumgartner A, Trbovic J, Golubev DS, Zaikin AD, Schönenberger C.

Nanotechnology. 2010 Jul 9;21(27):274002. doi: 10.1088/0957-4484/21/27/274002. Epub 2010 Jun 22.

PMID:
20571189
45.

Systems biology and longevity: an emerging approach to identify innovative anti-aging targets and strategies.

Cevenini E, Bellavista E, Tieri P, Castellani G, Lescai F, Francesconi M, Mishto M, Santoro A, Valensin S, Salvioli S, Capri M, Zaikin A, Monti D, de Magalhães JP, Franceschi C.

Curr Pharm Des. 2010;16(7):802-13. Review.

PMID:
20388091
46.

Crossed Andreev reflection and charge imbalance in diffusive normal-superconducting-normal structures.

Golubev DS, Kalenkov MS, Zaikin AD.

Phys Rev Lett. 2009 Aug 7;103(6):067006. Epub 2009 Aug 6.

PMID:
19792601
47.

Timing cellular decision making under noise via cell-cell communication.

Koseska A, Zaikin A, Kurths J, García-Ojalvo J.

PLoS One. 2009;4(3):e4872. doi: 10.1371/journal.pone.0004872. Epub 2009 Mar 13.

48.

Effect of stochastic resonance on bone loss in osteopenic conditions.

Rusconi M, Zaikin A, Marwan N, Kurths J.

Phys Rev Lett. 2008 Mar 28;100(12):128101. Epub 2008 Mar 26. Erratum in: Phys Rev Lett. 2008 Jun 13;100(23):239901.

PMID:
18517912
49.

Modeling the in vitro 20S proteasome activity: the effect of PA28-alphabeta and of the sequence and length of polypeptides on the degradation kinetics.

Mishto M, Luciani F, Holzhütter HG, Bellavista E, Santoro A, Textoris-Taube K, Franceschi C, Kloetzel PM, Zaikin A.

J Mol Biol. 2008 Apr 11;377(5):1607-17. doi: 10.1016/j.jmb.2008.01.086. Epub 2008 Feb 8.

PMID:
18336834
50.

Multistability and clustering in a population of synthetic genetic oscillators via phase-repulsive cell-to-cell communication.

Ullner E, Zaikin A, Volkov EI, García-Ojalvo J.

Phys Rev Lett. 2007 Oct 5;99(14):148103. Epub 2007 Oct 2.

PMID:
17930726

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