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Items: 40

1.

Prp8 impacts cryptic but not alternative splicing frequency.

Mayerle M, Yitiz S, Soulette C, Rogel LE, Ramirez A, Ragle JM, Katzman S, Guthrie C, Zahler AM.

Proc Natl Acad Sci U S A. 2019 Feb 5;116(6):2193-2199. doi: 10.1073/pnas.1819020116. Epub 2019 Jan 23.

2.

SNRP-27, the C. elegans homolog of the tri-snRNP 27K protein, has a role in 5' splice site positioning in the spliceosome.

Zahler AM, Rogel LE, Glover ML, Yitiz S, Ragle JM, Katzman S.

RNA. 2018 Oct;24(10):1314-1325. doi: 10.1261/rna.066878.118. Epub 2018 Jul 13.

PMID:
30006499
3.

Preferential expression of scores of functionally and evolutionarily diverse DNA and RNA-binding proteins during Oxytricha trifallax macronuclear development.

Neeb ZT, Hogan DJ, Katzman S, Zahler AM.

PLoS One. 2017 Feb 16;12(2):e0170870. doi: 10.1371/journal.pone.0170870. eCollection 2017.

4.

Coordinated tissue-specific regulation of adjacent alternative 3' splice sites in C. elegans.

Ragle JM, Katzman S, Akers TF, Barberan-Soler S, Zahler AM.

Genome Res. 2015 Jul;25(7):982-94. doi: 10.1101/gr.186783.114. Epub 2015 Apr 28.

5.

An expanding world of small RNAs.

Neeb ZT, Zahler AM.

Dev Cell. 2014 Jan 27;28(2):111-2. doi: 10.1016/j.devcel.2014.01.009.

6.

Mating of the stichotrichous ciliate Oxytricha trifallax induces production of a class of 27 nt small RNAs derived from the parental macronucleus.

Zahler AM, Neeb ZT, Lin A, Katzman S.

PLoS One. 2012;7(8):e42371. doi: 10.1371/journal.pone.0042371. Epub 2012 Aug 10.

7.

Pre-mRNA splicing and its regulation in Caenorhabditis elegans.

Zahler AM.

WormBook. 2012 Mar 21:1-21. doi: 10.1895/wormbook.1.31.2. Review.

8.

The conformation of microRNA seed regions in native microRNPs is prearranged for presentation to mRNA targets.

Lambert NJ, Gu SG, Zahler AM.

Nucleic Acids Res. 2011 Jun;39(11):4827-35. doi: 10.1093/nar/gkr077. Epub 2011 Feb 18.

9.

Co-regulation of alternative splicing by diverse splicing factors in Caenorhabditis elegans.

Barberan-Soler S, Medina P, Estella J, Williams J, Zahler AM.

Nucleic Acids Res. 2011 Jan;39(2):666-74. doi: 10.1093/nar/gkq767. Epub 2010 Aug 30.

10.
11.

Global analysis of alternative splicing uncovers developmental regulation of nonsense-mediated decay in C. elegans.

Barberan-Soler S, Lambert NJ, Zahler AM.

RNA. 2009 Sep;15(9):1652-60. doi: 10.1261/rna.1711109. Epub 2009 Jul 17.

12.

A genetic screen for suppressors of a mutated 5' splice site identifies factors associated with later steps of spliceosome assembly.

Dassah M, Patzek S, Hunt VM, Medina PE, Zahler AM.

Genetics. 2009 Jul;182(3):725-34. doi: 10.1534/genetics.109.103473. Epub 2009 Apr 20.

13.

Alternative splicing and the steady-state ratios of mRNA isoforms generated by it are under strong stabilizing selection in Caenorhabditis elegans.

Barberan-Soler S, Zahler AM.

Mol Biol Evol. 2008 Nov;25(11):2431-7. doi: 10.1093/molbev/msn181. Epub 2008 Aug 20.

14.

Alternative splicing regulation during C. elegans development: splicing factors as regulated targets.

Barberan-Soler S, Zahler AM.

PLoS Genet. 2008 Feb 29;4(2):e1000001. doi: 10.1371/journal.pgen.1000001.

15.

Alternative splicing in C. elegans.

Zahler AM.

WormBook. 2005 Sep 26:1-13. Review.

16.

Distinct ribonucleoprotein reservoirs for microRNA and siRNA populations in C. elegans.

Gu SG, Pak J, Barberan-Soler S, Ali M, Fire A, Zahler AM.

RNA. 2007 Sep;13(9):1492-504. Epub 2007 Jul 24.

17.

Intronic alternative splicing regulators identified by comparative genomics in nematodes.

Kabat JL, Barberan-Soler S, McKenna P, Clawson H, Farrer T, Zahler AM.

PLoS Comput Biol. 2006 Jul 14;2(7):e86. Epub 2006 Jun 5.

18.
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20.

Analysis of the role of Caenorhabditis elegans GC-AG introns in regulated splicing.

Farrer T, Roller AB, Kent WJ, Zahler AM.

Nucleic Acids Res. 2002 Aug 1;30(15):3360-7.

21.

The human genome browser at UCSC.

Kent WJ, Sugnet CW, Furey TS, Roskin KM, Pringle TH, Zahler AM, Haussler D.

Genome Res. 2002 Jun;12(6):996-1006.

22.
23.
24.

Tale of a tail kinase.

Zahler AM.

Nat Struct Biol. 2001 Feb;8(2):104-6. No abstract available.

PMID:
11175891
25.
26.
27.
28.

Purification of SR protein splicing factors.

Zahler AM.

Methods Mol Biol. 1999;118:419-32. No abstract available.

PMID:
10549540
29.

hnRNP A/B proteins are required for inhibition of HIV-1 pre-mRNA splicing.

Caputi M, Mayeda A, Krainer AR, Zahler AM.

EMBO J. 1999 Jul 15;18(14):4060-7.

30.
31.

A subset of SR proteins activates splicing of the cardiac troponin T alternative exon by direct interactions with an exonic enhancer.

Ramchatesingh J, Zahler AM, Neugebauer KM, Roth MB, Cooper TA.

Mol Cell Biol. 1995 Sep;15(9):4898-907.

32.
33.

Human SR proteins and isolation of a cDNA encoding SRp75.

Zahler AM, Neugebauer KM, Stolk JA, Roth MB.

Mol Cell Biol. 1993 Jul;13(7):4023-8.

34.

Distinct functions of SR proteins in alternative pre-mRNA splicing.

Zahler AM, Neugebauer KM, Lane WS, Roth MB.

Science. 1993 Apr 9;260(5105):219-22.

PMID:
8385799
35.

SR proteins: a conserved family of pre-mRNA splicing factors.

Zahler AM, Lane WS, Stolk JA, Roth MB.

Genes Dev. 1992 May;6(5):837-47.

36.

Two members of a conserved family of nuclear phosphoproteins are involved in pre-mRNA splicing.

Mayeda A, Zahler AM, Krainer AR, Roth MB.

Proc Natl Acad Sci U S A. 1992 Feb 15;89(4):1301-4.

37.
38.

Inhibition of telomerase by G-quartet DNA structures.

Zahler AM, Williamson JR, Cech TR, Prescott DM.

Nature. 1991 Apr 25;350(6320):718-20.

PMID:
2023635
39.

DNA primase and the replication of the telomeres in Oxytricha nova.

Zahler AM, Prescott DM.

Nucleic Acids Res. 1989 Aug 11;17(15):6299-317.

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