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Items: 1 to 50 of 139

1.

Integrating Activity with Accessibility in Olefin Metathesis: An Unprecedentedly Reactive Ruthenium-Indenylidene Catalyst.

Nascimento DL, Gawin A, Gawin R, Guńka PA, Zachara J, Skowerski K, Fogg DE.

J Am Chem Soc. 2019 Jul 10;141(27):10626-10631. doi: 10.1021/jacs.9b05362. Epub 2019 Jul 1.

PMID:
31248254
2.

Thermally induced structural transformations of linear coordination polymers based on aluminum tris(diorganophosphates).

Dębowski M, Łokaj K, Ostrowski A, Zachara J, Wiecińska P, Falkowski P, Krztoń-Maziopa A, Florjańczyk Z.

Dalton Trans. 2018 Nov 27;47(46):16480-16491. doi: 10.1039/c8dt02672f.

PMID:
30406796
3.

Publisher Correction: Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology.

Stegen JC, Johnson T, Fredrickson JK, Wilkins MJ, Konopka AE, Nelson WC, Arntzen EV, Chrisler WB, Chu RK, Fansler SJ, Graham EB, Kennedy DW, Resch CT, Tfaily M, Zachara J.

Nat Commun. 2018 Mar 7;9(1):1034. doi: 10.1038/s41467-018-03572-7.

4.

Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology.

Stegen JC, Johnson T, Fredrickson JK, Wilkins MJ, Konopka AE, Nelson WC, Arntzen EV, Chrisler WB, Chu RK, Fansler SJ, Graham EB, Kennedy DW, Resch CT, Tfaily M, Zachara J.

Nat Commun. 2018 Feb 8;9(1):585. doi: 10.1038/s41467-018-02922-9. Erratum in: Nat Commun. 2018 Mar 7;9(1):1034.

5.

How and Why Does Helium Permeate Nonporous Arsenolite Under High Pressure?

Guńka PA, Hapka M, Hanfland M, Dranka M, Chałasiński G, Zachara J.

Chemphyschem. 2018 Apr 5;19(7):857-864. doi: 10.1002/cphc.201701156. Epub 2018 Feb 13.

PMID:
29341365
6.

Regulation-Structured Dynamic Metabolic Model Provides a Potential Mechanism for Delayed Enzyme Response in Denitrification Process.

Song HS, Thomas DG, Stegen JC, Li M, Liu C, Song X, Chen X, Fredrickson JK, Zachara JM, Scheibe TD.

Front Microbiol. 2017 Sep 29;8:1866. doi: 10.3389/fmicb.2017.01866. eCollection 2017.

7.

Geochemical and Microbial Community Attributes in Relation to Hyporheic Zone Geological Facies.

Hou Z, Nelson WC, Stegen JC, Murray CJ, Arntzen E, Crump AR, Kennedy DW, Perkins MC, Scheibe TD, Fredrickson JK, Zachara JM.

Sci Rep. 2017 Sep 20;7(1):12006. doi: 10.1038/s41598-017-12275-w.

8.

Targeted quantification of functional enzyme dynamics in environmental samples for microbially mediated biogeochemical processes.

Li M, Gao Y, Qian WJ, Shi L, Liu Y, Nelson WC, Nicora CD, Resch CT, Thompson C, Yan S, Fredrickson JK, Zachara JM, Liu C.

Environ Microbiol Rep. 2017 Oct;9(5):512-521. doi: 10.1111/1758-2229.12558. Epub 2017 Jul 13.

PMID:
28618201
9.

Effect of Water Chemistry and Hydrodynamics on Nitrogen Transformation Activity and Microbial Community Functional Potential in Hyporheic Zone Sediment Columns.

Liu Y, Liu C, Nelson WC, Shi L, Xu F, Liu Y, Yan A, Zhong L, Thompson C, Fredrickson JK, Zachara JM.

Environ Sci Technol. 2017 May 2;51(9):4877-4886. doi: 10.1021/acs.est.6b05018. Epub 2017 Apr 18.

PMID:
28391700
10.

Fluorine-free electrolytes for all-solid sodium-ion batteries based on percyano-substituted organic salts.

Bitner-Michalska A, Nolis GM, Żukowska G, Zalewska A, Poterała M, Trzeciak T, Dranka M, Kalita M, Jankowski P, Niedzicki L, Zachara J, Marcinek M, Wieczorek W.

Sci Rep. 2017 Jan 9;7:40036. doi: 10.1038/srep40036.

11.

Ternary mixtures of ionic liquids for better salt solubility, conductivity and cation transference number improvement.

Karpierz E, Niedzicki L, Trzeciak T, Zawadzki M, Dranka M, Zachara J, Żukowska GZ, Bitner-Michalska A, Wieczorek W.

Sci Rep. 2016 Oct 21;6:35587. doi: 10.1038/srep35587.

12.

Linear coordination polymers based on aluminum phosphates: synthesis, crystal structure and morphology.

Dębowski M, Łokaj K, Wolak A, Żurawski K, Plichta A, Zachara J, Ostrowski A, Florjańczyk Z.

Dalton Trans. 2016 May 10;45(19):8008-20. doi: 10.1039/c6dt00153j.

PMID:
27072980
13.

Geometry of trigonal boron coordination sphere in boronic acids derivatives - a bond-valence vector model approach.

Czerwińska K, Madura ID, Zachara J.

Acta Crystallogr B Struct Sci Cryst Eng Mater. 2016 Apr;72(Pt 2):241-8. doi: 10.1107/S2052520616002262. Epub 2016 Apr 1.

PMID:
27048726
14.

Internal Domains of Natural Porous Media Revealed: Critical Locations for Transport, Storage, and Chemical Reaction.

Zachara J, Brantley S, Chorover J, Ewing R, Kerisit S, Liu C, Perfect E, Rother G, Stack AG.

Environ Sci Technol. 2016 Mar 15;50(6):2811-29. doi: 10.1021/acs.est.5b05015. Epub 2016 Mar 1. Review.

PMID:
26849204
15.

Direct involvement of ombB, omaB, and omcB genes in extracellular reduction of Fe(III) by Geobacter sulfurreducens PCA.

Liu Y, Fredrickson JK, Zachara JM, Shi L.

Front Microbiol. 2015 Oct 1;6:1075. doi: 10.3389/fmicb.2015.01075. eCollection 2015.

16.

(99)Tc(VII) Retardation, Reduction, and Redox Rate Scaling in Naturally Reduced Sediments.

Liu Y, Liu C, Kukkadapu RK, McKinley JP, Zachara J, Plymale AE, Miller MD, Varga T, Resch CT.

Environ Sci Technol. 2015 Nov 17;49(22):13403-12. doi: 10.1021/acs.est.5b03273. Epub 2015 Nov 2.

PMID:
26469942
17.

Nitrate bioreduction in redox-variable low permeability sediments.

Yan S, Liu Y, Liu C, Shi L, Shang J, Shan H, Zachara J, Fredrickson J, Kennedy D, Resch CT, Thompson C, Fansler S.

Sci Total Environ. 2016 Jan 1;539:185-195. doi: 10.1016/j.scitotenv.2015.08.122. Epub 2015 Sep 9.

PMID:
26363392
18.

Noncovalent interactions determine the conformation of aurophilic complexes with 2-mercapto-4-methyl-5-thiazoleacetic acid ligands.

Hapka M, Dranka M, Orłowska K, Chałasiński G, Szczęśniak MM, Zachara J.

Dalton Trans. 2015 Aug 14;44(30):13641-50. doi: 10.1039/c5dt01627d.

PMID:
26144218
19.

Redox Linked Flavin Sites in Extracellular Decaheme Proteins Involved in Microbe-Mineral Electron Transfer.

Edwards MJ, White GF, Norman M, Tome-Fernandez A, Ainsworth E, Shi L, Fredrickson JK, Zachara JM, Butt JN, Richardson DJ, Clarke TA.

Sci Rep. 2015 Jul 1;5:11677. doi: 10.1038/srep11677.

20.

Spatial dispersion of lone electron pairs?--experimental charge density of cubic arsenic(III) oxide.

Guńka PA, Gontarz Z, Zachara J.

Phys Chem Chem Phys. 2015 Apr 28;17(16):11020-7. doi: 10.1039/c4cp05656f.

PMID:
25824257
21.

Genomic analyses of bacterial porin-cytochrome gene clusters.

Shi L, Fredrickson JK, Zachara JM.

Front Microbiol. 2014 Nov 26;5:657. doi: 10.3389/fmicb.2014.00657. eCollection 2014.

22.

Chelating ruthenium phenolate complexes: synthesis, general catalytic activity, and applications in olefin metathesis polymerization.

Kozłowska A, Dranka M, Zachara J, Pump E, Slugovc C, Skowerski K, Grela K.

Chemistry. 2014 Oct 20;20(43):14120-5. doi: 10.1002/chem.201403580. Epub 2014 Sep 9.

PMID:
25204738
23.

A trans-outer membrane porin-cytochrome protein complex for extracellular electron transfer by Geobacter sulfurreducens PCA.

Liu Y, Wang Z, Liu J, Levar C, Edwards MJ, Babauta JT, Kennedy DW, Shi Z, Beyenal H, Bond DR, Clarke TA, Butt JN, Richardson DJ, Rosso KM, Zachara JM, Fredrickson JK, Shi L.

Environ Microbiol Rep. 2014 Dec;6(6):776-85. doi: 10.1111/1758-2229.12204. Epub 2014 Sep 24.

24.

The structure and energetics of arsenic(III) oxide intercalated by ionic azides.

Guńka PA, Kraszewski K, Chen YS, Zachara J.

Dalton Trans. 2014 Sep 7;43(33):12776-83. doi: 10.1039/c4dt01569j.

PMID:
25017432
25.

Investigation of U(VI) adsorption in quartz-chlorite mineral mixtures.

Wang Z, Zachara JM, Shang J, Jeon C, Liu J, Liu C.

Environ Sci Technol. 2014 Jul 15;48(14):7766-73. doi: 10.1021/es500537g. Epub 2014 Jun 30.

PMID:
24979668
26.

Toward coordination polymers based on fine-tunable group 13 organometallic phthalates.

Justyniak I, Bury W, Prochowicz D, Wójcik K, Zachara J, Lewiński J.

Inorg Chem. 2014 Jul 21;53(14):7270-5. doi: 10.1021/ic5005598. Epub 2014 Jun 27.

PMID:
24971955
27.

Lithium cation conducting TDI anion-based ionic liquids.

Niedzicki L, Karpierz E, Zawadzki M, Dranka M, Kasprzyk M, Zalewska A, Marcinek M, Zachara J, Domańska U, Wieczorek W.

Phys Chem Chem Phys. 2014 Jun 21;16(23):11417-25. doi: 10.1039/c3cp55354j.

PMID:
24803282
28.

The X-ray crystal structure of Shewanella oneidensis OmcA reveals new insight at the microbe-mineral interface.

Edwards MJ, Baiden NA, Johs A, Tomanicek SJ, Liang L, Shi L, Fredrickson JK, Zachara JM, Gates AJ, Butt JN, Richardson DJ, Clarke TA.

FEBS Lett. 2014 May 21;588(10):1886-90. doi: 10.1016/j.febslet.2014.04.013. Epub 2014 Apr 18.

29.

Effect of subgrid heterogeneity on scaling geochemical and biogeochemical reactions: a case of U(VI) desorption.

Liu C, Shang J, Shan H, Zachara JM.

Environ Sci Technol. 2014;48(3):1745-52. doi: 10.1021/es404224j. Epub 2014 Jan 13.

PMID:
24377314
30.

Influence of calcite on uranium(VI) reactive transport in the groundwater-river mixing zone.

Ma R, Liu C, Greskowiak J, Prommer H, Zachara J, Zheng C.

J Contam Hydrol. 2014 Jan;156:27-37. doi: 10.1016/j.jconhyd.2013.10.002. Epub 2013 Oct 23.

PMID:
24240103
31.

Rapid electron exchange between surface-exposed bacterial cytochromes and Fe(III) minerals.

White GF, Shi Z, Shi L, Wang Z, Dohnalkova AC, Marshall MJ, Fredrickson JK, Zachara JM, Butt JN, Richardson DJ, Clarke TA.

Proc Natl Acad Sci U S A. 2013 Apr 16;110(16):6346-51. doi: 10.1073/pnas.1220074110. Epub 2013 Mar 28.

32.

Persistence of uranium groundwater plumes: contrasting mechanisms at two DOE sites in the groundwater-river interaction zone.

Zachara JM, Long PE, Bargar J, Davis JA, Fox P, Fredrickson JK, Freshley MD, Konopka AE, Liu C, McKinley JP, Rockhold ML, Williams KH, Yabusaki SB.

J Contam Hydrol. 2013 Apr;147:45-72. doi: 10.1016/j.jconhyd.2013.02.001. Epub 2013 Feb 15.

PMID:
23500840
33.

Molecular electrostatic potential at the atomic sites in the effective core potential approximation.

Lesiuk M, Zachara J.

J Chem Phys. 2013 Feb 21;138(7):074107. doi: 10.1063/1.4792198.

PMID:
23444997
34.

Mtr extracellular electron-transfer pathways in Fe(III)-reducing or Fe(II)-oxidizing bacteria: a genomic perspective.

Shi L, Rosso KM, Zachara JM, Fredrickson JK.

Biochem Soc Trans. 2012 Dec 1;40(6):1261-7. doi: 10.1042/BST20120098.

PMID:
23176465
35.

Development of a proteoliposome model to probe transmembrane electron-transfer reactions.

White GF, Shi Z, Shi L, Dohnalkova AC, Fredrickson JK, Zachara JM, Butt JN, Richardson DJ, Clarke TA.

Biochem Soc Trans. 2012 Dec 1;40(6):1257-60. doi: 10.1042/BST20120116.

PMID:
23176464
36.

The roles of CymA in support of the respiratory flexibility of Shewanella oneidensis MR-1.

Marritt SJ, McMillan DG, Shi L, Fredrickson JK, Zachara JM, Richardson DJ, Jeuken LJ, Butt JN.

Biochem Soc Trans. 2012 Dec 1;40(6):1217-21. doi: 10.1042/BST20120150.

PMID:
23176457
37.

Molecular structure and free energy landscape for electron transport in the decahaem cytochrome MtrF.

Breuer M, Zarzycki P, Shi L, Clarke TA, Edwards MJ, Butt JN, Richardson DJ, Fredrickson JK, Zachara JM, Blumberger J, Rosso KM.

Biochem Soc Trans. 2012 Dec 1;40(6):1198-203. doi: 10.1042/BST20120139.

PMID:
23176454
38.

Analysis of structural MtrC models based on homology with the crystal structure of MtrF.

Edwards MJ, Fredrickson JK, Zachara JM, Richardson DJ, Clarke TA.

Biochem Soc Trans. 2012 Dec 1;40(6):1181-5. doi: 10.1042/BST20120132.

PMID:
23176451
39.

Electron transport at the microbe-mineral interface: a synthesis of current research challenges.

Richardson DJ, Fredrickson JK, Zachara JM.

Biochem Soc Trans. 2012 Dec 1;40(6):1163-6. doi: 10.1042/BST20120242.

PMID:
23176448
40.

Redox reactions of reduced flavin mononucleotide (FMN), riboflavin (RBF), and anthraquinone-2,6-disulfonate (AQDS) with ferrihydrite and lepidocrocite.

Shi Z, Zachara JM, Shi L, Wang Z, Moore DA, Kennedy DW, Fredrickson JK.

Environ Sci Technol. 2012 Nov 6;46(21):11644-52. doi: 10.1021/es301544b. Epub 2012 Oct 24.

PMID:
22985396
41.

Axial chiral metallocenes by two-fold ring-closing metathesis.

Buchowicz W, Furmańczyk A, Zachara J, Majchrzak M.

Dalton Trans. 2012 Aug 21;41(31):9269-71. doi: 10.1039/c2dt31291c. Epub 2012 Jul 2.

PMID:
22751637
42.

Pore-scale characterization of biogeochemical controls on iron and uranium speciation under flow conditions.

Pearce CI, Wilkins MJ, Zhang C, Heald SM, Fredrickson JK, Zachara JM.

Environ Sci Technol. 2012 Aug 7;46(15):7992-8000. doi: 10.1021/es301050h. Epub 2012 Jul 13.

PMID:
22731932
43.

(2R,3R)-3-O-Benzoyl-N-benzyl-tartramide.

Madura ID, Zachara J, Bernaś U, Hajmowicz H, Synoradzki L.

Acta Crystallogr Sect E Struct Rep Online. 2012 Jun 1;68(Pt 6):o1891-2. doi: 10.1107/S1600536812022933. Epub 2012 May 26.

44.

The crystal structure of the extracellular 11-heme cytochrome UndA reveals a conserved 10-heme motif and defined binding site for soluble iron chelates.

Edwards MJ, Hall A, Shi L, Fredrickson JK, Zachara JM, Butt JN, Richardson DJ, Clarke TA.

Structure. 2012 Jul 3;20(7):1275-84. doi: 10.1016/j.str.2012.04.016. Epub 2012 Jun 7.

45.

The 'porin-cytochrome' model for microbe-to-mineral electron transfer.

Richardson DJ, Butt JN, Fredrickson JK, Zachara JM, Shi L, Edwards MJ, White G, Baiden N, Gates AJ, Marritt SJ, Clarke TA.

Mol Microbiol. 2012 Jul;85(2):201-12. doi: 10.1111/j.1365-2958.2012.08088.x. Epub 2012 May 30. Review.

46.

Exploring the biochemistry at the extracellular redox frontier of bacterial mineral Fe(III) respiration.

Richardson DJ, Edwards MJ, White GF, Baiden N, Hartshorne RS, Fredrickson J, Shi L, Zachara J, Gates AJ, Butt JN, Clarke TA.

Biochem Soc Trans. 2012 Jun 1;40(3):493-500. doi: 10.1042/BST20120018. Review.

PMID:
22616858
47.

A functional description of CymA, an electron-transfer hub supporting anaerobic respiratory flexibility in Shewanella.

Marritt SJ, Lowe TG, Bye J, McMillan DG, Shi L, Fredrickson J, Zachara J, Richardson DJ, Cheesman MR, Jeuken LJ, Butt JN.

Biochem J. 2012 Jun 15;444(3):465-74. doi: 10.1042/BJ20120197.

PMID:
22458729
48.

Establishing a geochemical heterogeneity model for a contaminated vadose zone--aquifer system.

Murray CJ, Zachara JM, McKinley JP, Ward A, Bott YJ, Draper K, Moore D.

J Contam Hydrol. 2013 Oct;153:122-40. doi: 10.1016/j.jconhyd.2012.02.003. Epub 2012 Mar 3.

PMID:
23664489
49.

Molecular Underpinnings of Fe(III) Oxide Reduction by Shewanella Oneidensis MR-1.

Shi L, Rosso KM, Clarke TA, Richardson DJ, Zachara JM, Fredrickson JK.

Front Microbiol. 2012 Feb 15;3:50. doi: 10.3389/fmicb.2012.00050. eCollection 2012.

50.

Identification and Characterization of MtoA: A Decaheme c-Type Cytochrome of the Neutrophilic Fe(II)-Oxidizing Bacterium Sideroxydans lithotrophicus ES-1.

Liu J, Wang Z, Belchik SM, Edwards MJ, Liu C, Kennedy DW, Merkley ED, Lipton MS, Butt JN, Richardson DJ, Zachara JM, Fredrickson JK, Rosso KM, Shi L.

Front Microbiol. 2012 Feb 8;3:37. doi: 10.3389/fmicb.2012.00037. eCollection 2012.

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