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Items: 1 to 50 of 179

1.

Solution scattering approaches to dynamical ordering in biomolecular systems.

Bernadó P, Shimizu N, Zaccai G, Kamikubo H, Sugiyama M.

Biochim Biophys Acta. 2018 Feb;1862(2):253-274. doi: 10.1016/j.bbagen.2017.10.015. Epub 2017 Oct 26. Review.

PMID:
29107147
2.

On the quest for the elusive mechanism of action of daptomycin: Binding, fusion, and oligomerization.

Zhang J, Scott WRP, Gabel F, Wu M, Desmond R, Bae J, Zaccai G, Algar WR, Straus SK.

Biochim Biophys Acta Proteins Proteom. 2017 Nov;1865(11 Pt B):1490-1499. doi: 10.1016/j.bbapap.2017.07.020. Epub 2017 Aug 24.

PMID:
28844744
3.

Mobility of a Mononucleotide within a Lipid Matrix: A Neutron Scattering Study.

Misuraca L, Natali F, da Silva L, Peters J, Demé B, Ollivier J, Seydel T, Laux-Lesourd V, Haertlein M, Zaccai G, Deamer D, Maurel MC.

Life (Basel). 2017 Jan 4;7(1). pii: E2. doi: 10.3390/life7010002.

4.

A central cavity within the holo-translocon suggests a mechanism for membrane protein insertion.

Botte M, Zaccai NR, Nijeholt JL, Martin R, Knoops K, Papai G, Zou J, Deniaud A, Karuppasamy M, Jiang Q, Roy AS, Schulten K, Schultz P, Rappsilber J, Zaccai G, Berger I, Collinson I, Schaffitzel C.

Sci Rep. 2016 Dec 7;6:38399. doi: 10.1038/srep38399.

5.

The fluctuating ribosome: thermal molecular dynamics characterized by neutron scattering.

Zaccai G, Natali F, Peters J, Řihová M, Zimmerman E, Ollivier J, Combet J, Maurel MC, Bashan A, Yonath A.

Sci Rep. 2016 Nov 16;6:37138. doi: 10.1038/srep37138.

6.

Neutrons describe ectoine effects on water H-bonding and hydration around a soluble protein and a cell membrane.

Zaccai G, Bagyan I, Combet J, Cuello GJ, Demé B, Fichou Y, Gallat FX, Galvan Josa VM, von Gronau S, Haertlein M, Martel A, Moulin M, Neumann M, Weik M, Oesterhelt D.

Sci Rep. 2016 Aug 16;6:31434. doi: 10.1038/srep31434.

7.

Self-assembly Controls Self-cleavage of HHR from ASBVd (-): a Combined SANS and Modeling Study.

Leclerc F, Zaccai G, Vergne J, Řìhovà M, Martel A, Maurel MC.

Sci Rep. 2016 Jul 26;6:30287. doi: 10.1038/srep30287.

8.

Molecular adaptation and salt stress response of Halobacterium salinarum cells revealed by neutron spectroscopy.

Vauclare P, Marty V, Fabiani E, Martinez N, Jasnin M, Gabel F, Peters J, Zaccai G, Franzetti B.

Extremophiles. 2015 Nov;19(6):1099-107. doi: 10.1007/s00792-015-0782-x. Epub 2015 Sep 16.

PMID:
26376634
9.

Dynamic footprint of sequestration in the molecular fluctuations of osteopontin.

Lenton S, Seydel T, Nylander T, Holt C, Härtlein M, Teixeira S, Zaccai G.

J R Soc Interface. 2015 Sep 6;12(110):0506. doi: 10.1098/rsif.2015.0506.

10.

Molecular Dynamics Simulations of a Powder Model of the Intrinsically Disordered Protein Tau.

Fichou Y, Heyden M, Zaccai G, Weik M, Tobias DJ.

J Phys Chem B. 2015 Oct 1;119(39):12580-9. doi: 10.1021/acs.jpcb.5b05849. Epub 2015 Sep 18.

PMID:
26351734
11.

Thermal fluctuations in amphipol A8-35 particles: a neutron scattering and molecular dynamics study.

Tehei M, Perlmutter JD, Giusti F, Sachs JN, Zaccai G, Popot JL.

J Membr Biol. 2014 Oct;247(9-10):897-908. doi: 10.1007/s00232-014-9725-1. Epub 2014 Sep 10.

PMID:
25204390
12.

Picosecond dynamics in haemoglobin from different species: a quasielastic neutron scattering study.

Stadler AM, Garvey CJ, Embs JP, Koza MM, Unruh T, Artmann G, Zaccai G.

Biochim Biophys Acta. 2014 Oct;1840(10):2989-99. doi: 10.1016/j.bbagen.2014.06.007. Epub 2014 Jun 19.

PMID:
24954308
13.

Correlation between supercoiling and conformational motions of the bacterial flagellar filament.

Stadler AM, Unruh T, Namba K, Samatey F, Zaccai G.

Biophys J. 2013 Nov 5;105(9):2157-65. doi: 10.1016/j.bpj.2013.09.039.

14.

Perspectives in biological physics: the nDDB project for a neutron Dynamics Data Bank for biological macromolecules.

Rusevich L, García Sakai V, Franzetti B, Johnson M, Natali F, Pellegrini E, Peters J, Pieper J, Weik M, Zaccai G.

Eur Phys J E Soft Matter. 2013 Jul;36(7):80. doi: 10.1140/epje/i2013-13080-5. Epub 2013 Jul 17.

PMID:
23884625
15.

Dynamics measured by neutron scattering correlates with the organization of bioenergetics complexes in natural membranes from hyperthermophile and mesophile bacteria.

Peters J, Giudici-Orticoni MT, Zaccai G, Guiral M.

Eur Phys J E Soft Matter. 2013 Jul;36(7):78. doi: 10.1140/epje/i2013-13078-y. Epub 2013 Jul 17.

PMID:
23880731
16.

Change of dynamics of raft-model membrane induced by amyloid-β protein binding.

Hirai M, Kimura R, Takeuchi K, Sugiyama M, Kasahara K, Ohta N, Farago B, Stadler A, Zaccai G.

Eur Phys J E Soft Matter. 2013 Jul;36(7):74. doi: 10.1140/epje/i2013-13074-3. Epub 2013 Jul 16.

PMID:
23852578
17.

Neutron scattering: a tool to detect in vivo thermal stress effects at the molecular dynamics level in micro-organisms.

Marty V, Jasnin M, Fabiani E, Vauclare P, Gabel F, Trapp M, Peters J, Zaccai G, Franzetti B.

J R Soc Interface. 2013 Feb 27;10(82):20130003. doi: 10.1098/rsif.2013.0003. Print 2013 May 6.

18.

Hydration shells with a pinch of salt.

Zaccai G.

Biopolymers. 2013 Apr;99(4):233-8. doi: 10.1002/bip.22154.

PMID:
23348670
19.

A polymer surfactant corona dynamically replaces water in solvent-free protein liquids and ensures macromolecular flexibility and activity.

Gallat FX, Brogan AP, Fichou Y, McGrath N, Moulin M, Härtlein M, Combet J, Wuttke J, Mann S, Zaccai G, Jackson CJ, Perriman AW, Weik M.

J Am Chem Soc. 2012 Aug 15;134(32):13168-71. doi: 10.1021/ja303894g. Epub 2012 Aug 2.

PMID:
22853639
20.

Dynamical coupling of intrinsically disordered proteins and their hydration water: comparison with folded soluble and membrane proteins.

Gallat FX, Laganowsky A, Wood K, Gabel F, van Eijck L, Wuttke J, Moulin M, Härtlein M, Eisenberg D, Colletier JP, Zaccai G, Weik M.

Biophys J. 2012 Jul 3;103(1):129-36. doi: 10.1016/j.bpj.2012.05.027.

21.

Binding of the J-binding protein to DNA containing glucosylated hmU (base J) or 5-hmC: evidence for a rapid conformational change upon DNA binding.

Heidebrecht T, Fish A, von Castelmur E, Johnson KA, Zaccai G, Borst P, Perrakis A.

J Am Chem Soc. 2012 Aug 15;134(32):13357-65. doi: 10.1021/ja303423t. Epub 2012 Jul 31.

PMID:
22775585
22.

Thermal fluctuations of haemoglobin from different species: adaptation to temperature via conformational dynamics.

Stadler AM, Garvey CJ, Bocahut A, Sacquin-Mora S, Digel I, Schneider GJ, Natali F, Artmann GM, Zaccai G.

J R Soc Interface. 2012 Nov 7;9(76):2845-55. Epub 2012 Jun 13.

23.

Straight lines of neutron scattering in biology: a review of basic controls in SANS and EINS.

Zaccai G.

Eur Biophys J. 2012 Oct;41(10):781-7. doi: 10.1007/s00249-012-0825-5. Epub 2012 May 30. Review.

PMID:
22644502
24.

Dynamics-stability relationships in apo- and holomyoglobin: a combined neutron scattering and molecular dynamics simulations study.

Stadler AM, Pellegrini E, Johnson M, Fitter J, Zaccai G.

Biophys J. 2012 Jan 18;102(2):351-9. doi: 10.1016/j.bpj.2011.12.031.

25.

Kinetic asymmetry of subunit exchange of homooligomeric protein as revealed by deuteration-assisted small-angle neutron scattering.

Sugiyama M, Kurimoto E, Yagi H, Mori K, Fukunaga T, Hirai M, Zaccai G, Kato K.

Biophys J. 2011 Oct 19;101(8):2037-42. doi: 10.1016/j.bpj.2011.09.004.

26.

A neutron diffraction study of purple membranes under pressure.

Rossand IG, Zaccai G, Fragneto G.

Acta Crystallogr D Biol Crystallogr. 2010 Nov;66(Pt 11):1232-6. doi: 10.1107/S0907444910037856. Epub 2010 Oct 20.

PMID:
21041943
27.

The case for an empirical 'high-throughput' neutron scattering approach to protein dynamics.

Zaccai G.

Acta Crystallogr D Biol Crystallogr. 2010 Nov;66(Pt 11):1224-8. doi: 10.1107/S0907444910021086. Epub 2010 Oct 20.

PMID:
21041941
28.

Specific cellular water dynamics observed in vivo by neutron scattering and NMR.

Jasnin M, Stadler A, Tehei M, Zaccai G.

Phys Chem Chem Phys. 2010 Sep 21;12(35):10154-60. doi: 10.1039/c0cp01048k. Epub 2010 Aug 16.

PMID:
20714607
29.

Dynamics of heparan sulfate explored by neutron scattering.

Jasnin M, van Eijck L, Koza MM, Peters J, Laguri C, Lortat-Jacob H, Zaccai G.

Phys Chem Chem Phys. 2010 Apr 14;12(14):3360-2. doi: 10.1039/b923878f. Epub 2010 Mar 1.

PMID:
20336244
30.

The low-temperature inflection observed in neutron scattering measurements of proteins is due to methyl rotation: direct evidence using isotope labeling and molecular dynamics simulations.

Wood K, Tobias DJ, Kessler B, Gabel F, Oesterhelt D, Mulder FA, Zaccai G, Weik M.

J Am Chem Soc. 2010 Apr 14;132(14):4990-1. doi: 10.1021/ja910502g.

PMID:
20302295
31.

Double superhelix model of high density lipoprotein.

Wu Z, Gogonea V, Lee X, Wagner MA, Li XM, Huang Y, Undurti A, May RP, Haertlein M, Moulin M, Gutsche I, Zaccai G, Didonato JA, Hazen SL.

J Biol Chem. 2009 Dec 25;284(52):36605-19. doi: 10.1074/jbc.M109.039537. Epub 2009 Oct 7.

32.

Biological physics at large facilities: from molecule to cell.

Zaccai G.

J R Soc Interface. 2009 Oct 6;6 Suppl 5:S565-6. doi: 10.1098/rsif.2009.0269.focus. Epub 2009 Jul 29. No abstract available.

33.

From powder to solution: hydration dependence of human hemoglobin dynamics correlated to body temperature.

Stadler AM, Digel I, Embs JP, Unruh T, Tehei M, Zaccai G, Büldt G, Artmann GM.

Biophys J. 2009 Jun 17;96(12):5073-81. doi: 10.1016/j.bpj.2009.03.043.

34.

Quantitative modelfree analysis of urea binding to unfolded ubiquitin using a combination of small angle X-ray and neutron scattering.

Gabel F, Jensen MR, Zaccaï G, Blackledge M.

J Am Chem Soc. 2009 Jul 1;131(25):8769-71. doi: 10.1021/ja9013248.

PMID:
19505145
35.

From shell to cell: neutron scattering studies of biological water dynamics and coupling to activity.

Frölich A, Gabel F, Jasnin M, Lehnert U, Oesterhelt D, Stadler AM, Tehei M, Weik M, Wood K, Zaccai G.

Faraday Discuss. 2009;141:117-30; dsicussion 175-207.

PMID:
19227354
36.

Direct correlation between molecular dynamics and enzymatic stability: a comparative neutron scattering study of native human butyrylcholinesterase and its "aged" soman conjugate.

Gabel F, Masson P, Froment MT, Doctor BP, Saxena A, Silman I, Zaccai G, Weik M.

Biophys J. 2009 Feb 18;96(4):1489-94. doi: 10.1016/j.bpj.2008.10.029.

37.

New sources and instrumentation for neutrons in biology.

Teixeira SC, Ankner J, Bellissent-Funel MC, Bewley R, Blakeley MP, Coates L, Dahint R, Dalgliesh R, Dencher N, Dhont J, Fischer P, Forsyth VT, Fragneto G, Frick B, Geue T, Gilles R, Gutberlet T, Haertlein M, Hauß T, Häußler W, Heller WT, Herwig K, Holderer O, Juranyi F, Kampmann R, Knott R, Kohlbrecher J, Kreuger S, Langan P, Lechner R, Lynn G, Majkrzak C, May R, Meilleur F, Mo Y, Mortensen K, Myles DA, Natali F, Neylon C, Niimura N, Ollivier J, Ostermann A, Peters J, Pieper J, Rühm A, Schwahn D, Shibata K, Soper AK, Straessle T, Suzuki UI, Tanaka I, Tehei M, Timmins P, Torikai N, Unruh T, Urban V, Vavrin R, Weiss K, Zaccai G.

Chem Phys. 2008;345(2-3):133-151.

38.

Cytoplasmic water and hydration layer dynamics in human red blood cells.

Stadler AM, Embs JP, Digel I, Artmann GM, Unruh T, Büldt G, Zaccai G.

J Am Chem Soc. 2008 Dec 17;130(50):16852-3. doi: 10.1021/ja807691j.

PMID:
19053467
39.

Dynamics of apomyoglobin in the alpha-to-beta transition and of partially unfolded aggregated protein.

Fabiani E, Stadler AM, Madern D, Koza MM, Tehei M, Hirai M, Zaccai G.

Eur Biophys J. 2009 Feb;38(2):237-44. doi: 10.1007/s00249-008-0375-z. Epub 2008 Oct 14.

PMID:
18853152
40.

Hemoglobin dynamics in red blood cells: correlation to body temperature.

Stadler AM, Digel I, Artmann GM, Embs JP, Zaccai G, Büldt G.

Biophys J. 2008 Dec;95(11):5449-61. doi: 10.1529/biophysj.108.138040. Epub 2008 Aug 15.

41.

Dynamical heterogeneity of specific amino acids in bacteriorhodopsin.

Wood K, Grudinin S, Kessler B, Weik M, Johnson M, Kneller GR, Oesterhelt D, Zaccai G.

J Mol Biol. 2008 Jul 11;380(3):581-91. doi: 10.1016/j.jmb.2008.04.077. Epub 2008 May 11.

PMID:
18565346
42.

Down to atomic-scale intracellular water dynamics.

Jasnin M, Moulin M, Haertlein M, Zaccai G, Tehei M.

EMBO Rep. 2008 Jun;9(6):543-7. doi: 10.1038/embor.2008.50. Epub 2008 May 2. Erratum in: EMBO Rep. 2008 Jun;9(6):590. Moulin, Martina [corrected to Moulin, Martine].

43.

In vivo measurement of internal and global macromolecular motions in Escherichia coli.

Jasnin M, Moulin M, Haertlein M, Zaccai G, Tehei M.

Biophys J. 2008 Jul;95(2):857-64. doi: 10.1529/biophysj.107.124420. Epub 2008 Mar 21.

44.

Hydration dependence of active core fluctuations in bacteriorhodopsin.

Wood K, Lehnert U, Kessler B, Zaccai G, Oesterhelt D.

Biophys J. 2008 Jul;95(1):194-202. doi: 10.1529/biophysj.107.120386. Epub 2008 Mar 13.

45.

Coincidence of dynamical transitions in a soluble protein and its hydration water: direct measurements by neutron scattering and MD simulations.

Wood K, Frölich A, Paciaroni A, Moulin M, Härtlein M, Zaccai G, Tobias DJ, Weik M.

J Am Chem Soc. 2008 Apr 9;130(14):4586-7. doi: 10.1021/ja710526r. Epub 2008 Mar 14.

PMID:
18338890
46.

Solvent isotope effect on macromolecular dynamics in E. coli.

Jasnin M, Tehei M, Moulin M, Haertlein M, Zaccai G.

Eur Biophys J. 2008 Jun;37(5):613-7. doi: 10.1007/s00249-008-0281-4. Epub 2008 Feb 20.

PMID:
18286276
47.

Dynamics of hydration water in deuterated purple membranes explored by neutron scattering.

Wood K, Plazanet M, Gabel F, Kessler B, Oesterhelt D, Zaccai G, Weik M.

Eur Biophys J. 2008 Jun;37(5):619-26. doi: 10.1007/s00249-008-0285-0. Epub 2008 Feb 20.

48.

Use of a 'caged' analogue to study the traffic of choline within acetylcholinesterase by kinetic crystallography.

Colletier JP, Royant A, Specht A, Sanson B, Nachon F, Masson P, Zaccai G, Sussman JL, Goeldner M, Silman I, Bourgeois D, Weik M.

Acta Crystallogr D Biol Crystallogr. 2007 Nov;63(Pt 11):1115-28. Epub 2007 Oct 17.

PMID:
18007027
49.

Coupling of protein and hydration-water dynamics in biological membranes.

Wood K, Plazanet M, Gabel F, Kessler B, Oesterhelt D, Tobias DJ, Zaccai G, Weik M.

Proc Natl Acad Sci U S A. 2007 Nov 13;104(46):18049-54. Epub 2007 Nov 6.

50.

Self-association of adenine-dependent hairpin ribozymes.

Li YL, Maurel MC, Ebel C, Vergne J, Pipich V, Zaccai G.

Eur Biophys J. 2008 Feb;37(2):173-82. Epub 2007 Sep 25.

PMID:
17899064

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