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Items: 34

1.

How bacterial cells and colonies move on solid substrates.

Pönisch W, Weber CA, Zaburdaev V.

Phys Rev E. 2019 Apr;99(4-1):042419. doi: 10.1103/PhysRevE.99.042419.

PMID:
31108726
2.

Identifying the mechanism for superdiffusivity in mouse fibroblast motility.

Passucci G, Brasch ME, Henderson JH, Zaburdaev V, Manning ML.

PLoS Comput Biol. 2019 Feb 14;15(2):e1006732. doi: 10.1371/journal.pcbi.1006732. eCollection 2019 Feb.

3.

The shape of pinned forced polymer loops.

Huang W, Zaburdaev V.

Soft Matter. 2019 Feb 20;15(8):1785-1792. doi: 10.1039/c8sm02357c.

PMID:
30746544
4.

Pili mediated intercellular forces shape heterogeneous bacterial microcolonies prior to multicellular differentiation.

Pönisch W, Eckenrode KB, Alzurqa K, Nasrollahi H, Weber C, Zaburdaev V, Biais N.

Sci Rep. 2018 Nov 8;8(1):16567. doi: 10.1038/s41598-018-34754-4.

5.

Chemotactic drift speed for bacterial motility pattern with two alternating turning events.

Pankratova EV, Kalyakulina AI, Krivonosov MI, Denisov SV, Taute KM, Zaburdaev VY.

PLoS One. 2018 Jan 19;13(1):e0190434. doi: 10.1371/journal.pone.0190434. eCollection 2018.

6.

Live cell X-ray imaging of autophagic vacuoles formation and chromatin dynamics in fission yeast.

Strelnikova N, Sauter N, Guizar-Sicairos M, Göllner M, Diaz A, Delivani P, Chacón M, Tolić IM, Zaburdaev V, Pfohl T.

Sci Rep. 2017 Oct 23;7(1):13775. doi: 10.1038/s41598-017-13175-9.

7.

A tunable refractive index matching medium for live imaging cells, tissues and model organisms.

Boothe T, Hilbert L, Heide M, Berninger L, Huttner WB, Zaburdaev V, Vastenhouw NL, Myers EW, Drechsel DN, Rink JC.

Elife. 2017 Jul 14;6. pii: e27240. doi: 10.7554/eLife.27240.

8.

Elasticity-based polymer sorting in active fluids: a Brownian dynamics study.

Shin J, Cherstvy AG, Kim WK, Zaburdaev V.

Phys Chem Chem Phys. 2017 Jul 19;19(28):18338-18347. doi: 10.1039/c7cp02947k.

PMID:
28678228
9.

Competition between histone and transcription factor binding regulates the onset of transcription in zebrafish embryos.

Joseph SR, Pálfy M, Hilbert L, Kumar M, Karschau J, Zaburdaev V, Shevchenko A, Vastenhouw NL.

Elife. 2017 Apr 20;6. pii: e23326. doi: 10.7554/eLife.23326.

10.

Superdiffusive Dispersals Impart the Geometry of Underlying Random Walks.

Zaburdaev V, Fouxon I, Denisov S, Barkai E.

Phys Rev Lett. 2016 Dec 30;117(27):270601. doi: 10.1103/PhysRevLett.117.270601. Epub 2016 Dec 29.

PMID:
28084765
11.

Nucleosomal arrangement affects single-molecule transcription dynamics.

Fitz V, Shin J, Ehrlich C, Farnung L, Cramer P, Zaburdaev V, Grill SW.

Proc Natl Acad Sci U S A. 2016 Nov 8;113(45):12733-12738. doi: 10.1073/pnas.1602764113. Epub 2016 Oct 24.

12.

A pH-driven transition of the cytoplasm from a fluid- to a solid-like state promotes entry into dormancy.

Munder MC, Midtvedt D, Franzmann T, Nüske E, Otto O, Herbig M, Ulbricht E, Müller P, Taubenberger A, Maharana S, Malinovska L, Richter D, Guck J, Zaburdaev V, Alberti S.

Elife. 2016 Mar 22;5. pii: e09347. doi: 10.7554/eLife.09347.

13.

Pulled Polymer Loops as a Model for the Alignment of Meiotic Chromosomes.

Lin YT, Frömberg D, Huang W, Delivani P, Chacón M, Tolić IM, Jülicher F, Zaburdaev V.

Phys Rev Lett. 2015 Nov 13;115(20):208102. doi: 10.1103/PhysRevLett.115.208102. Epub 2015 Nov 9.

PMID:
26613475
14.

Formation and dissolution of bacterial colonies.

Weber CA, Lin YT, Biais N, Zaburdaev V.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Sep;92(3):032704. doi: 10.1103/PhysRevE.92.032704. Epub 2015 Sep 3.

PMID:
26465495
15.

Pili-Induced Clustering of N. gonorrhoeae Bacteria.

Taktikos J, Lin YT, Stark H, Biais N, Zaburdaev V.

PLoS One. 2015 Sep 10;10(9):e0137661. doi: 10.1371/journal.pone.0137661. eCollection 2015.

16.

Asymptotic densities of ballistic Lévy walks.

Froemberg D, Schmiedeberg M, Barkai E, Zaburdaev V.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Feb;91(2):022131. Epub 2015 Feb 20.

PMID:
25768482
17.

Uncovering the mechanism of trapping and cell orientation during Neisseria gonorrhoeae twitching motility.

Zaburdaev V, Biais N, Schmiedeberg M, Eriksson J, Jonsson AB, Sheetz MP, Weitz DA.

Biophys J. 2014 Oct 7;107(7):1523-31. doi: 10.1016/j.bpj.2014.07.061.

18.

How the motility pattern of bacteria affects their dispersal and chemotaxis.

Taktikos J, Stark H, Zaburdaev V.

PLoS One. 2013 Dec 31;8(12):e81936. doi: 10.1371/journal.pone.0081936. eCollection 2013. Erratum in: PLoS One. 2014;9(3):e92348.

19.

A bacterial swimmer with two alternating speeds of propagation.

Theves M, Taktikos J, Zaburdaev V, Stark H, Beta C.

Biophys J. 2013 Oct 15;105(8):1915-24. doi: 10.1016/j.bpj.2013.08.047.

20.

Space-time velocity correlation function for random walks.

Zaburdaev V, Denisov S, Hänggi P.

Phys Rev Lett. 2013 Apr 26;110(17):170604. Epub 2013 Apr 26.

PMID:
23679699
21.

Liquid transport facilitated by channels in Bacillus subtilis biofilms.

Wilking JN, Zaburdaev V, De Volder M, Losick R, Brenner MP, Weitz DA.

Proc Natl Acad Sci U S A. 2013 Jan 15;110(3):848-52. doi: 10.1073/pnas.1216376110. Epub 2012 Dec 27.

22.

Langevin description of superdiffusive Lévy processes.

Eule S, Zaburdaev V, Friedrich R, Geisel T.

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Oct;86(4 Pt 1):041134. Epub 2012 Oct 19.

PMID:
23214556
23.

Collective dynamics of model microorganisms with chemotactic signaling.

Taktikos J, Zaburdaev V, Stark H.

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 May;85(5 Pt 1):051901. Epub 2012 May 1.

PMID:
23004782
24.

Lévy walks with velocity fluctuations.

Denisov S, Zaburdaev V, Hänggi P.

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Mar;85(3 Pt 1):031148. Epub 2012 Mar 30.

PMID:
22587079
25.

Modeling a self-propelled autochemotactic walker.

Taktikos J, Zaburdaev V, Stark H.

Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Oct;84(4 Pt 1):041924. Epub 2011 Oct 21.

PMID:
22181192
26.

Langevin dynamics deciphers the motility pattern of swimming parasites.

Zaburdaev V, Uppaluri S, Pfohl T, Engstler M, Friedrich R, Stark H.

Phys Rev Lett. 2011 May 20;106(20):208103. Epub 2011 May 20.

PMID:
21668266
27.

Perturbation spreading in many-particle systems: a random walk approach.

Zaburdaev V, Denisov S, Hänggi P.

Phys Rev Lett. 2011 May 6;106(18):180601. Epub 2011 May 3. Erratum in: Phys Rev Lett. 2012 Aug 10;109(6):069903.

PMID:
21635077
28.

Random walks with random velocities.

Zaburdaev V, Schmiedeberg M, Stark H.

Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Jul;78(1 Pt 1):011119. Epub 2008 Jul 22.

PMID:
18763931
29.

Chaoticity of the wet granular gas.

Fingerle A, Herminghaus S, Zaburdaev VY.

Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Jun;75(6 Pt 1):061301. Epub 2007 Jun 7.

PMID:
17677249
30.

Dry and wet granular shock waves.

Zaburdaev VY, Herminghaus S.

Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Mar;75(3 Pt 1):031304. Epub 2007 Mar 12.

PMID:
17500690
31.

Free cooling of the one-dimensional wet granular gas.

Zaburdaev VY, Brinkmann M, Herminghaus S.

Phys Rev Lett. 2006 Jul 7;97(1):018001. Epub 2006 Jul 7.

PMID:
16907408
32.

Kolmogorov-Sinai entropy of the dilute wet granular gas.

Fingerle A, Herminghaus S, Zaburdaev V.

Phys Rev Lett. 2005 Nov 4;95(19):198001. Epub 2005 Oct 31.

PMID:
16384026
33.

Subdiffusion in random compressible flows.

Chukbar K, Zaburdaev V.

Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Jun;71(6 Pt 1):061105. Epub 2005 Jun 20.

PMID:
16089720
34.

Comment on "Towards deterministic equations for Lévy walks: the fractional material derivative".

Chukbar KV, Zaburdaev VY.

Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Sep;68(3 Pt 1):033101. Epub 2003 Sep 11.

PMID:
14524816

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