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Methanol production by reversed methylotrophy constructed in Escherichia coli.

Takeya T, Yamakita M, Hayashi D, Fujisawa K, Sakai Y, Yurimoto H.

Biosci Biotechnol Biochem. 2020 Jan 16:1-7. doi: 10.1080/09168451.2020.1715202. [Epub ahead of print]


Engineering the expression system for Komagataella phaffii (Pichia pastoris): an attempt to develop a methanol-free expression system.

Takagi S, Tsutsumi N, Terui Y, Kong X, Yurimoto H, Sakai Y.

FEMS Yeast Res. 2019 Sep 1;19(6). pii: foz059. doi: 10.1093/femsyr/foz059.


Methylotrophic Yeasts: Current Understanding of Their C1-Metabolism and its Regulation by Sensing Methanol for Survival on Plant Leaves.

Yurimoto H, Sakai Y.

Curr Issues Mol Biol. 2019 Jun 5;33:197-210. doi: 10.21775/cimb.033.197. [Epub ahead of print]


Community composition and methane oxidation activity of methanotrophs associated with duckweeds in a fresh water lake.

Iguchi H, Umeda R, Taga H, Oyama T, Yurimoto H, Sakai Y.

J Biosci Bioeng. 2019 Oct;128(4):450-455. doi: 10.1016/j.jbiosc.2019.04.009. Epub 2019 May 16.


Peroxisomal Fba2p and Tal2p complementally function in the rearrangement pathway for xylulose 5-phosphate in the methylotrophic yeast Pichia pastoris.

Fukuoka H, Kawase T, Oku M, Yurimoto H, Sakai Y, Hayakawa T, Nakagawa T.

J Biosci Bioeng. 2019 Jul;128(1):33-38. doi: 10.1016/j.jbiosc.2019.01.008. Epub 2019 Jan 30.


Weka Trainable Segmentation Plugin in ImageJ: A Semi-Automatic Tool Applied to Crystal Size Distributions of Microlites in Volcanic Rocks.

Lormand C, Zellmer GF, Németh K, Kilgour G, Mead S, Palmer AS, Sakamoto N, Yurimoto H, Moebis A.

Microsc Microanal. 2018 Dec;24(6):667-675. doi: 10.1017/S1431927618015428.


Ethanol represses the expression of methanol-inducible genes via acetyl-CoA synthesis in the yeast Komagataella phaffii.

Ohsawa S, Nishida S, Oku M, Sakai Y, Yurimoto H.

Sci Rep. 2018 Dec 21;8(1):18051. doi: 10.1038/s41598-018-36732-2.


Pantothenate auxotrophy of Methylobacterium spp. isolated from living plants.

Yoshida Y, Iguchi H, Sakai Y, Yurimoto H.

Biosci Biotechnol Biochem. 2019 Mar;83(3):569-577. doi: 10.1080/09168451.2018.1549935. Epub 2018 Nov 26.


A Pichia pastoris single-cell biosensor for detection of enzymatically produced methanol.

Takeya T, Yurimoto H, Sakai Y.

Appl Microbiol Biotechnol. 2018 Aug;102(16):7017-7027. doi: 10.1007/s00253-018-9144-9. Epub 2018 Jun 11.


KaiC family proteins integratively control temperature-dependent UV resistance in Methylobacterium extorquens AM1.

Iguchi H, Yoshida Y, Fujisawa K, Taga H, Yurimoto H, Oyama T, Sakai Y.

Environ Microbiol Rep. 2018 Dec;10(6):634-643. doi: 10.1111/1758-2229.12662. Epub 2018 Sep 17.


44Ca doped remineralization study on dentin by isotope microscopy.

Hiraishi N, Kobayashi S, Yurimoto H, Tagami J.

Dent Mater. 2018 Apr;34(4):e57-e62. doi: 10.1016/


Yeast Hog1 proteins are sequestered in stress granules during high-temperature stress.

Shiraishi K, Hioki T, Habata A, Yurimoto H, Sakai Y.

J Cell Sci. 2018 Jan 9;131(1). pii: jcs209114. doi: 10.1242/jcs.209114.


Liquid-like behavior of UV-irradiated interstellar ice analog at low temperatures.

Tachibana S, Kouchi A, Hama T, Oba Y, Piani L, Sugawara I, Endo Y, Hidaka H, Kimura Y, Murata KI, Yurimoto H, Watanabe N.

Sci Adv. 2017 Sep 29;3(9):eaao2538. doi: 10.1126/sciadv.aao2538. eCollection 2017 Sep.


The search for and analysis of direct samples of early Solar System aqueous fluids.

Zolensky ME, Bodnar RJ, Yurimoto H, Itoh S, Fries M, Steele A, Chan QH, Tsuchiyama A, Kebukawa Y, Ito M.

Philos Trans A Math Phys Eng Sci. 2017 May 28;375(2094). pii: 20150386. doi: 10.1098/rsta.2015.0386. Review.


Novel function of Wsc proteins as a methanol-sensing machinery in the yeast Pichia pastoris.

Ohsawa S, Yurimoto H, Sakai Y.

Mol Microbiol. 2017 Apr;104(2):349-363. doi: 10.1111/mmi.13631. Epub 2017 Feb 21.


Young asteroidal fluid activity revealed by absolute age from apatite in carbonaceous chondrite.

Zhang AC, Li QL, Yurimoto H, Sakamoto N, Li XH, Hu S, Lin YT, Wang RC.

Nat Commun. 2016 Sep 29;7:12844. doi: 10.1038/ncomms12844.


Localization of Minodronate in Mouse Femora Through Isotope Microscopy.

Hongo H, Sasaki M, Kobayashi S, Hasegawa T, Yamamoto T, Tsuboi K, Tsuchiya E, Nagai T, Khadiza N, Abe M, Kudo A, Oda K, Henrique Luiz de Freitas P, Li M, Yurimoto H, Amizuka N.

J Histochem Cytochem. 2016 Oct;64(10):601-22. doi: 10.1369/0022155416665577.


The fifth epidermal growth factor-like region of thrombomodulin exerts cytoprotective function and prevents SOS in a murine model.

Ikezoe T, Yang J, Nishioka C, Pan B, Xu K, Furihata M, Nakamura K, Yurimoto H, Sakai Y, Honda G, Yokoyama A.

Bone Marrow Transplant. 2017 Jan;52(1):73-79. doi: 10.1038/bmt.2016.195. Epub 2016 Jul 18.


High-pressure minerals in eucrite suggest a small source crater on Vesta.

Pang RL, Zhang AC, Wang SZ, Wang RC, Yurimoto H.

Sci Rep. 2016 May 16;6:26063. doi: 10.1038/srep26063.


Unique C-terminal region of Hap3 is required for methanol-regulated gene expression in the methylotrophic yeast Candida boidinii.

Oda S, Yurimoto H, Nitta N, Sakai Y.

Microbiology. 2016 May;162(5):898-907. doi: 10.1099/mic.0.000275. Epub 2016 Mar 10.


Roseomonas elaeocarpi sp. nov., isolated from olive (Elaeocarpus hygrophilus Kurz.) phyllosphere.

Damtab J, Nutaratat P, Boontham W, Srisuk N, Duangmal K, Yurimoto H, Sakai Y, Muramatsu Y, Nakagawa Y.

Int J Syst Evol Microbiol. 2016 Jan;66(1):474-480. doi: 10.1099/ijsem.0.000748. Epub 2015 Nov 6.


[Bone Cell Biology Assessed by Microscopic Approach. Novel insights about bone tissue by new microscopy systems].

Tsuboi K, Hasegawa T, Hongo H, Yurimoto H, Kobayashi S.

Clin Calcium. 2015 Oct;25(10):1505-11. doi: CliCa151015051511. Japanese.


Regulation of nitrate and methylamine metabolism by multiple nitrogen sources in the methylotrophic yeast Candida boidinii.

Shiraishi K, Oku M, Uchida D, Yurimoto H, Sakai Y.

FEMS Yeast Res. 2015 Nov;15(7). pii: fov084. doi: 10.1093/femsyr/fov084. Epub 2015 Sep 16.


Draft genomes of gammaproteobacterial methanotrophs isolated from terrestrial ecosystems.

Hamilton R, Kits KD, Ramonovskaya VA, Rozova ON, Yurimoto H, Iguchi H, Khmelenina VN, Sakai Y, Dunfield PF, Klotz MG, Knief C, Op den Camp HJ, Jetten MS, Bringel F, Vuilleumier S, Svenning MM, Shapiro N, Woyke T, Trotsenko YA, Stein LY, Kalyuzhnaya MG.

Genome Announc. 2015 Jun 4;3(3). pii: e00515-15. doi: 10.1128/genomeA.00515-15.


Yeast nitrogen utilization in the phyllosphere during plant lifespan under regulation of autophagy.

Shiraishi K, Oku M, Kawaguchi K, Uchida D, Yurimoto H, Sakai Y.

Sci Rep. 2015 Apr 21;5:9719. doi: 10.1038/srep09719.


Molecular characterization of hap complex components responsible for methanol-inducible gene expression in the methylotrophic yeast Candida boidinii.

Oda S, Yurimoto H, Nitta N, Sasano Y, Sakai Y.

Eukaryot Cell. 2015 Mar;14(3):278-85. doi: 10.1128/EC.00285-14. Epub 2015 Jan 16.


Interactions of Methylotrophs with Plants and Other Heterotrophic Bacteria.

Iguchi H, Yurimoto H, Sakai Y.

Microorganisms. 2015 Apr 2;3(2):137-51. doi: 10.3390/microorganisms3020137. Review.


Isotope microscopy visualization of the adsorption profile of 2-methylisoborneol and geosmin in powdered activated carbon.

Matsui Y, Sakamoto A, Nakao S, Taniguchi T, Matsushita T, Shirasaki N, Sakamoto N, Yurimoto H.

Environ Sci Technol. 2014 Sep 16;48(18):10897-903. doi: 10.1021/es5024515. Epub 2014 Sep 8.


Expression of a codon-optimized Aspergillus niger pectin methylesterase gene in the methylotrophic yeast Candida boidinii.

Kawaguchi K, Yurimoto H, Sakai Y.

Biosci Biotechnol Biochem. 2014;78(4):718-21. doi: 10.1080/09168451.2014.891936. Epub 2014 Apr 23.


Methyloparacoccus murrellii gen. nov., sp. nov., a methanotroph isolated from pond water.

Hoefman S, van der Ha D, Iguchi H, Yurimoto H, Sakai Y, Boon N, Vandamme P, Heylen K, De Vos P.

Int J Syst Evol Microbiol. 2014 Jun;64(Pt 6):2100-7. doi: 10.1099/ijs.0.057760-0. Epub 2014 Mar 27.


Aquatic plant surface as a niche for methanotrophs.

Yoshida N, Iguchi H, Yurimoto H, Murakami A, Sakai Y.

Front Microbiol. 2014 Feb 3;5:30. doi: 10.3389/fmicb.2014.00030. eCollection 2014.


Stable isotope cellular imaging reveals that both live and degenerating fungal pelotons transfer carbon and nitrogen to orchid protocorms.

Kuga Y, Sakamoto N, Yurimoto H.

New Phytol. 2014 Apr;202(2):594-605. doi: 10.1111/nph.12700. Epub 2014 Feb 3.


Tissue specific localization of pectin-Ca²⁺ cross-linkages and pectin methyl-esterification during fruit ripening in tomato (Solanum lycopersicum).

Hyodo H, Terao A, Furukawa J, Sakamoto N, Yurimoto H, Satoh S, Iwai H.

PLoS One. 2013 Nov 13;8(11):e78949. doi: 10.1371/journal.pone.0078949. eCollection 2013.


Stress resistance and C1 metabolism involved in plant colonization of a methanotroph Methylosinus sp. B4S.

Iguchi H, Sato I, Yurimoto H, Sakai Y.

Arch Microbiol. 2013 Nov;195(10-11):717-26. doi: 10.1007/s00203-013-0922-6. Epub 2013 Sep 15.


Dominant colonization and inheritance of Methylobacterium sp. strain OR01 on perilla plants.

Mizuno M, Yurimoto H, Iguchi H, Tani A, Sakai Y.

Biosci Biotechnol Biochem. 2013;77(7):1533-8. Epub 2013 Jul 7.


Synthesis of ¹⁸O-labeled RNA for application to kinetic studies and imaging.

Hamasaki T, Matsumoto T, Sakamoto N, Shimahara A, Kato S, Yoshitake A, Utsunomiya A, Yurimoto H, Gabazza EC, Ohgi T.

Nucleic Acids Res. 2013 Jul;41(12):e126. doi: 10.1093/nar/gkt344. Epub 2013 Apr 30.


Arsenic alters uptake and distribution of sulphur in Pteris vittata.

Watanabe T, Kouho R, Katayose T, Kitajima N, Sakamoto N, Yamaguchi N, Shinano T, Yurimoto H, Osaki M.

Plant Cell Environ. 2014 Jan;37(1):45-53. doi: 10.1111/pce.12124. Epub 2013 May 17.


Expression level of methanol-inducible peroxisomal proteins and peroxisome morphology are affected by oxygen conditions and mitochondrial respiratory pathway function in the methylotrophic yeast Candida boidinii.

Fujimura S, Yurimoto H, Kurimoto S, Matsufuji Y, Ito T, Hayakawa T, Tomizuka N, Sakai Y, Nakagawa T.

FEMS Yeast Res. 2013 Jun;13(4):359-66. doi: 10.1111/1567-1364.12040. Epub 2013 Mar 15.


Development of an ultra-high performance multi-turn TOF-SIMS/SNMS system "MULTUM-SIMS/SNMS".

Ebata S, Ishihara M, Kumondai K, Mibuka R, Uchino K, Yurimoto H.

J Am Soc Mass Spectrom. 2013 Feb;24(2):222-9. doi: 10.1007/s13361-012-0528-2. Epub 2013 Jan 5.


Roseomonas musae sp. nov., a new bacterium isolated from a banana phyllosphere.

Nutaratat P, Srisuk N, Duangmal K, Yurimoto H, Sakai Y, Muramatsu Y, Nakagawa Y.

Antonie Van Leeuwenhoek. 2013 Mar;103(3):617-24. doi: 10.1007/s10482-012-9845-5. Epub 2012 Nov 10.


Needle-like grains across growth lines in the coral skeleton of Porites lobata.

Motai S, Nagai T, Sowa K, Watanabe T, Sakamoto N, Yurimoto H, Kawano J.

J Struct Biol. 2012 Dec;180(3):389-93. doi: 10.1016/j.jsb.2012.09.009. Epub 2012 Oct 4.


Distribution of methanotrophs in the phyllosphere.

Iguchi H, Sato I, Sakakibara M, Yurimoto H, Sakai Y.

Biosci Biotechnol Biochem. 2012;76(8):1580-3. Epub 2012 Aug 7.


Molecular characterization of Candida boidinii MIG1 and its role in the regulation of methanol-inducible gene expression.

Zhai Z, Yurimoto H, Sakai Y.

Yeast. 2012 Jul;29(7):293-301. doi: 10.1002/yea.2909. Epub 2012 Jun 18.


Distribution of pink-pigmented facultative methylotrophs on leaves of vegetables.

Mizuno M, Yurimoto H, Yoshida N, Iguchi H, Sakai Y.

Biosci Biotechnol Biochem. 2012;76(3):578-80.


Msn5p is involved in formaldehyde resistance but not in oxidative stress response in the methylotrophic yeast Candida boidinii.

Zhai Z, Yurimoto H, Sakai Y.

Biosci Biotechnol Biochem. 2012;76(2):299-304. Epub 2012 Feb 7.


Stimulation of methanotrophic growth in cocultures by cobalamin excreted by rhizobia.

Iguchi H, Yurimoto H, Sakai Y.

Appl Environ Microbiol. 2011 Dec;77(24):8509-15. doi: 10.1128/AEM.05834-11. Epub 2011 Oct 7.


Yeast methylotrophy and autophagy in a methanol-oscillating environment on growing Arabidopsis thaliana leaves.

Kawaguchi K, Yurimoto H, Oku M, Sakai Y.

PLoS One. 2011;6(9):e25257. doi: 10.1371/journal.pone.0025257. Epub 2011 Sep 26.


Irradiation history of Itokawa regolith material deduced from noble gases in the Hayabusa samples.

Nagao K, Okazaki R, Nakamura T, Miura YN, Osawa T, Bajo K, Matsuda S, Ebihara M, Ireland TR, Kitajima F, Naraoka H, Noguchi T, Tsuchiyama A, Yurimoto H, Zolensky ME, Uesugi M, Shirai K, Abe M, Yada T, Ishibashi Y, Fujimura A, Mukai T, Ueno M, Okada T, Yoshikawa M, Kawaguchi J.

Science. 2011 Aug 26;333(6046):1128-31. doi: 10.1126/science.1207785.


Three-dimensional structure of Hayabusa samples: origin and evolution of Itokawa regolith.

Tsuchiyama A, Uesugi M, Matsushima T, Michikami T, Kadono T, Nakamura T, Uesugi K, Nakano T, Sandford SA, Noguchi R, Matsumoto T, Matsuno J, Nagano T, Imai Y, Takeuchi A, Suzuki Y, Ogami T, Katagiri J, Ebihara M, Ireland TR, Kitajima F, Nagao K, Naraoka H, Noguchi T, Okazaki R, Yurimoto H, Zolensky ME, Mukai T, Abe M, Yada T, Fujimura A, Yoshikawa M, Kawaguchi J.

Science. 2011 Aug 26;333(6046):1125-8. doi: 10.1126/science.1207807.


Neutron activation analysis of a particle returned from asteroid Itokawa.

Ebihara M, Sekimoto S, Shirai N, Hamajima Y, Yamamoto M, Kumagai K, Oura Y, Ireland TR, Kitajima F, Nagao K, Nakamura T, Naraoka H, Noguchi T, Okazaki R, Tsuchiyama A, Uesugi M, Yurimoto H, Zolensky ME, Abe M, Fujimura A, Mukai T, Yada Y.

Science. 2011 Aug 26;333(6046):1119-21. doi: 10.1126/science.1207865.

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