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Items: 25

1.

Exome-wide search and functional annotation of genes associated in patients with severe tick-borne encephalitis in a Russian population.

Ignatieva EV, Yurchenko AA, Voevoda MI, Yudin NS.

BMC Med Genomics. 2019 May 24;12(Suppl 3):61. doi: 10.1186/s12920-019-0503-x.

2.

Whole Genome Sequencing and Re-sequencing of the Sable Antelope (Hippotragus niger): A Resource for Monitoring Diversity in ex Situ and in Situ Populations.

Koepfli KP, Tamazian G, Wildt D, Dobrynin P, Kim C, Frandsen PB, Godinho R, Yurchenko AA, Komissarov A, Krasheninnikova K, Kliver S, Kolchanova S, Gonçalves M, Carneiro M, Pinto PV, Ferrand N, Maldonado JE, Ferrie GM, Chemnick L, Ryder OA, Johnson WE, Comizzoli P, O'Brien SJ, Pukazhenthi BS.

G3 (Bethesda). 2019 Jun 5;9(6):1785-1793. doi: 10.1534/g3.119.400084.

3.

Exome-wide survey of the Siberian Caucasian population.

Yurchenko AA, Yudin NS, Voevoda MI.

BMC Med Genet. 2019 Apr 9;20(Suppl 1):51. doi: 10.1186/s12881-019-0772-4.

4.

Genome-wide association study and scan for signatures of selection point to candidate genes for body temperature maintenance under the cold stress in Siberian cattle populations.

Igoshin AV, Yurchenko AA, Belonogova NM, Petrovsky DV, Aitnazarov RB, Soloshenko VA, Yudin NS, Larkin DM.

BMC Genet. 2019 Mar 18;20(Suppl 1):26. doi: 10.1186/s12863-019-0725-0.

5.

Cloning and Functional Analysis of SaCLCc1, a Gene Belonging to the Chloride Channel Family (CLC), from the Halophyte Suaeda altissima (L.) Pall.

Nedelyaeva OI, Shuvalov AV, Mayorova OV, Yurchenko AA, Popova LG, Balnokin YV, Karpichev IV.

Dokl Biochem Biophys. 2018 Jul;481(1):186-189. doi: 10.1134/S1607672918040026. Epub 2018 Aug 31.

PMID:
30168055
6.

Scans for signatures of selection in Russian cattle breed genomes reveal new candidate genes for environmental adaptation and acclimation.

Yurchenko AA, Daetwyler HD, Yudin N, Schnabel RD, Vander Jagt CJ, Soloshenko V, Lhasaranov B, Popov R, Taylor JF, Larkin DM.

Sci Rep. 2018 Aug 28;8(1):12984. doi: 10.1038/s41598-018-31304-w.

7.

[In silico Analyses of Transcriptomes of the Marine Green Microalga Dunaliella tertiolecta: Identification of Sequences Encoding P-type ATPases].

Popova LG, Belyaev DV, Shuvalov AV, Yurchenko AA, Matalin DA, Khramov DE, Orlova YV, Balnokin YV.

Mol Biol (Mosk). 2018 Jul-Aug;52(4):601-615. doi: 10.1134/S002689841804016X. Russian.

8.

Analytical "bake-off" of whole genome sequencing quality for the Genome Russia project using a small cohort for autoimmune hepatitis.

Zhernakova DV, Kliver S, Cherkasov N, Tamazian G, Rotkevich M, Krasheninnikova K, Evsyukov I, Sidorov S, Dobrynin P, Yurchenko AA, Shimansky V, Shcherbakova IV, Glotov AS, Valle DL, Tang M, Shin E, Schwarz KB, O'Brien SJ.

PLoS One. 2018 Jul 11;13(7):e0200423. doi: 10.1371/journal.pone.0200423. eCollection 2018.

9.

Correction to: De novo transcriptome assembly, annotation and comparison of four ecological and evolutionary model salmonid fish species.

Carruthers M, Yurchenko AA, Augley JJ, Adams CE, Herzyk P, Elmer KR.

BMC Genomics. 2018 Jun 11;19(1):448. doi: 10.1186/s12864-018-4840-5.

10.

Population genetic structure and phylogeography of sterlet (Acipenser ruthenus, Acipenseridae) in the Ob and Yenisei river basins.

Pobedintseva MA, Makunin AI, Kichigin IG, Kulemzina AI, Serdyukova NA, Romanenko SA, Vorobieva NV, Interesova EA, Korentovich MA, Zaytsev VF, Mischenko AV, Zadelenov VA, Yurchenko AA, Sherbakov DY, Graphodatsky AS, Trifonov VA.

Mitochondrial DNA A DNA Mapp Seq Anal. 2019 Jan;30(1):156-164. doi: 10.1080/24701394.2018.1467409. Epub 2018 May 2.

PMID:
29716429
11.

Transcriptome of the bivalve Limecola balthica L. from Western Pacific: A new resource for studies of European populations.

Yurchenko AA, Katolikova N, Polev D, Shcherbakova I, Strelkov P.

Mar Genomics. 2018 Jul;40:58-63. doi: 10.1016/j.margen.2018.03.007. Epub 2018 Apr 12.

PMID:
29657123
12.

A matrix metalloproteinase 9 (MMP9) gene single nucleotide polymorphism is associated with predisposition to tick-borne encephalitis virus-induced severe central nervous system disease.

Barkhash AV, Yurchenko AA, Yudin NS, Ignatieva EV, Kozlova IV, Borishchuk IA, Pozdnyakova LL, Voevoda MI, Romaschenko AG.

Ticks Tick Borne Dis. 2018 May;9(4):763-767. doi: 10.1016/j.ttbdis.2018.02.010. Epub 2018 Feb 17.

PMID:
29496490
13.

De novo transcriptome assembly, annotation and comparison of four ecological and evolutionary model salmonid fish species.

Carruthers M, Yurchenko AA, Augley JJ, Adams CE, Herzyk P, Elmer KR.

BMC Genomics. 2018 Jan 8;19(1):32. doi: 10.1186/s12864-017-4379-x. Erratum in: BMC Genomics. 2018 Jun 11;19(1):448.

14.

Correction: Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding.

Vij S, Kuhl H, Kuznetsova IS, Komissarov A, Yurchenko AA, Van Heusden P, Singh S, Thevasagayam NM, Prakki SR, Purushothaman K, Saju JM, Jiang J, Mbandi SK, Jonas M, Hin Yan Tong A, Mwangi S, Lau D, Ngoh SY, Liew WC, Shen X, Hon LS, Drake JP, Boitano M, Hall R, Chin CS, Lachumanan R, Korlach J, Trifonov V, Kabilov M, Tupikin A, Green D, Moxon S, Garvin T, Sedlazeck FJ, Vurture GW, Gopalapillai G, Katneni VK, Noble TH, Scaria V, Sivasubbu S, Jerry DR, O'Brien SJ, Schatz MC, Dalmay T, Turner SW, Lok S, Christoffels A, Orbán L.

PLoS Genet. 2016 Dec 9;12(12):e1006500. doi: 10.1371/journal.pgen.1006500. eCollection 2016 Dec.

15.

Pangolin genomes and the evolution of mammalian scales and immunity.

Choo SW, Rayko M, Tan TK, Hari R, Komissarov A, Wee WY, Yurchenko AA, Kliver S, Tamazian G, Antunes A, Wilson RK, Warren WC, Koepfli KP, Minx P, Krasheninnikova K, Kotze A, Dalton DL, Vermaak E, Paterson IC, Dobrynin P, Sitam FT, Rovie-Ryan JJ, Johnson WE, Yusoff AM, Luo SJ, Karuppannan KV, Fang G, Zheng D, Gerstein MB, Lipovich L, O'Brien SJ, Wong GJ.

Genome Res. 2016 Oct;26(10):1312-1322. Epub 2016 Aug 10.

16.

Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding.

Vij S, Kuhl H, Kuznetsova IS, Komissarov A, Yurchenko AA, Van Heusden P, Singh S, Thevasagayam NM, Prakki SR, Purushothaman K, Saju JM, Jiang J, Mbandi SK, Jonas M, Hin Yan Tong A, Mwangi S, Lau D, Ngoh SY, Liew WC, Shen X, Hon LS, Drake JP, Boitano M, Hall R, Chin CS, Lachumanan R, Korlach J, Trifonov V, Kabilov M, Tupikin A, Green D, Moxon S, Garvin T, Sedlazeck FJ, Vurture GW, Gopalapillai G, Kumar Katneni V, Noble TH, Scaria V, Sivasubbu S, Jerry DR, O'Brien SJ, Schatz MC, Dalmay T, Turner SW, Lok S, Christoffels A, Orbán L.

PLoS Genet. 2016 Apr 15;12(4):e1005954. doi: 10.1371/journal.pgen.1005954. eCollection 2016 Apr. Erratum in: PLoS Genet. 2016 Dec 9;12 (12 ):e1006500.

17.

Genomic legacy of the African cheetah, Acinonyx jubatus.

Dobrynin P, Liu S, Tamazian G, Xiong Z, Yurchenko AA, Krasheninnikova K, Kliver S, Schmidt-Küntzel A, Koepfli KP, Johnson W, Kuderna LF, García-Pérez R, Manuel Md, Godinez R, Komissarov A, Makunin A, Brukhin V, Qiu W, Zhou L, Li F, Yi J, Driscoll C, Antunes A, Oleksyk TK, Eizirik E, Perelman P, Roelke M, Wildt D, Diekhans M, Marques-Bonet T, Marker L, Bhak J, Wang J, Zhang G, O'Brien SJ.

Genome Biol. 2015 Dec 10;16:277. doi: 10.1186/s13059-015-0837-4.

18.

The Population Origins and Expansion of Feral Cats in Australia.

Spencer PB, Yurchenko AA, David VA, Scott R, Koepfli KP, Driscoll C, O'Brien SJ, Menotti-Raymond M.

J Hered. 2016 Mar;107(2):104-14. doi: 10.1093/jhered/esv095. Epub 2015 Dec 7.

19.

New Metabolites from a Marine Sediment-Derived Fungus, Aspergillus carneus.

Yurchenko AA, Smetanina OF, Kalinovsky AI, Kirichuk NN, Pivkin MV, Ivanets EV, Yurchenko EA, Afiyatullov SSh.

Nat Prod Commun. 2015 Jul;10(7):1247-50.

PMID:
26411022
20.

Genome-wide Evidence Reveals that African and Eurasian Golden Jackals Are Distinct Species.

Koepfli KP, Pollinger J, Godinho R, Robinson J, Lea A, Hendricks S, Schweizer RM, Thalmann O, Silva P, Fan Z, Yurchenko AA, Dobrynin P, Makunin A, Cahill JA, Shapiro B, Álvares F, Brito JC, Geffen E, Leonard JA, Helgen KM, Johnson WE, O'Brien SJ, Van Valkenburgh B, Wayne RK.

Curr Biol. 2015 Aug 17;25(16):2158-65. doi: 10.1016/j.cub.2015.06.060. Epub 2015 Jul 30.

21.

1,2-migration in N-phosphano functionalized N-heterocyclic carbenes.

Kirilchuk AA, Yurchenko AA, Kostyuk AN, Rozhenko AB.

J Comput Chem. 2015 Jan 5;36(1):42-8. doi: 10.1002/jcc.23767. Epub 2014 Nov 3.

PMID:
25363134
22.

Comparative enzyme immunoassay of matrix metalloproteinases-2, -7, -9 and their tissue inhibitor-2 in tumors and plasma of patients with gastric cancer.

Gerstein ES, Sini L, Ryabov AB, Dvorova EK, Yurchenko AA, Stilidi IS, Kushlinskii NE, Davydov MI.

Bull Exp Biol Med. 2009 Dec;148(6):899-902.

PMID:
21116502
23.

N-phosphorylated imidazolium salts as precursors to 2- and 5-phosphorylated imidazoles and new imidazol-2-ylidenes featuring the PNCN unit.

Marchenko AP, Koidan HN, Huryeva AN, Zarudnitskii EV, Yurchenko AA, Kostyuk AN.

J Org Chem. 2010 Nov 5;75(21):7141-5. doi: 10.1021/jo101177h.

PMID:
20925421
24.

Analysis of NM23 protein and components of plasminogen activation system in tumors of patients with stomach cancer with consideration for disease clinical picture and morphology.

Kushlinskii NE, Delektorskaya VV, Mochal'nikova VV, Sini L, Yurchenko AA, Ryabov AB, Stilidi IS.

Bull Exp Biol Med. 2008 Dec;146(6):786-90. English, Russian.

PMID:
19513384
25.

Relationship between expression of NM23 protein and clinical morphological factors and content of plasminogen activation system components in tumors of patients with gastric cancer.

Kushlinskii NE, Yurchenko AA, Delektorskaya VV, Gerstein ES.

Bull Exp Biol Med. 2007 Jun;143(6):733-6. English, Russian.

PMID:
18239814

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