Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 111

1.

Characterization of the microbiota in long- and short-term natural indigo fermentation.

Tu Z, de Fátima Silva Lopes H, Igarashi K, Yumoto I.

J Ind Microbiol Biotechnol. 2019 Dec;46(12):1657-1667. doi: 10.1007/s10295-019-02223-0. Epub 2019 Aug 20.

PMID:
31432338
2.

Analysis of the microbiota involved in the early changes associated with indigo reduction in the natural fermentation of indigo.

Tu Z, de Fátima Silva Lopes H, Hirota K, Yumoto I.

World J Microbiol Biotechnol. 2019 Jul 26;35(8):123. doi: 10.1007/s11274-019-2699-5.

PMID:
31346774
3.

Formation of Proton Motive Force Under Low-Aeration Alkaline Conditions in Alkaliphilic Bacteria.

Matsuno T, Goto T, Ogami S, Morimoto H, Yamazaki K, Inoue N, Matsuyama H, Yoshimune K, Yumoto I.

Front Microbiol. 2018 Oct 2;9:2331. doi: 10.3389/fmicb.2018.02331. eCollection 2018. Review.

4.

Microbial Communities Associated With Indigo Fermentation That Thrive in Anaerobic Alkaline Environments.

Aino K, Hirota K, Okamoto T, Tu Z, Matsuyama H, Yumoto I.

Front Microbiol. 2018 Sep 18;9:2196. doi: 10.3389/fmicb.2018.02196. eCollection 2018. Review.

5.

Bacillus fermenti sp. nov., an indigo-reducing obligate alkaliphile isolated from indigo fermentation liquor for dyeing.

Hirota K, Nishita M, Tu Z, Matsuyama H, Yumoto I.

Int J Syst Evol Microbiol. 2018 Apr;68(4):1123-1129. doi: 10.1099/ijsem.0.002636. Epub 2018 Feb 16.

PMID:
29458563
6.

Correction: Vibrio aphrogenes sp. nov., in the Rumoiensis clade isolated from a seaweed.

Tanaka M, Endo S, Kotake F, Al-Saari N, Amin AKMR, Feng G, Mino S, Doi H, Ogura Y, Hayashi T, Suda W, Hattori M, Yumoto I, Sawabe T, Sawabe T, Araki T.

PLoS One. 2017 Dec 7;12(12):e0189555. doi: 10.1371/journal.pone.0189555. eCollection 2017.

7.

Paralkalibacillus indicireducens gen., nov., sp. nov., an indigo-reducing obligate alkaliphile isolated from indigo fermentation liquor used for dyeing.

Hirota K, Nishita M, Matsuyama H, Yumoto I.

Int J Syst Evol Microbiol. 2017 Oct;67(10):4050-4056. doi: 10.1099/ijsem.0.002248. Epub 2017 Sep 18.

PMID:
28905696
8.

Vibrio aphrogenes sp. nov., in the Rumoiensis clade isolated from a seaweed.

Tanaka M, Endo S, Kotake F, Al-Saari N, Amin AKMR, Feng G, Mino S, Doi H, Ogura Y, Hayashi T, Suda W, Hattori M, Yumoto I, Sawabe T, Sawabe T, Araki T.

PLoS One. 2017 Jun 29;12(6):e0180053. doi: 10.1371/journal.pone.0180053. eCollection 2017. Erratum in: PLoS One. 2017 Dec 7;12 (12 ):e0189555.

9.

Development of media to accelerate the isolation of indigo-reducing bacteria, which are difficult to isolate using conventional media.

Nishita M, Hirota K, Matsuyama H, Yumoto I.

World J Microbiol Biotechnol. 2017 Jul;33(7):133. doi: 10.1007/s11274-017-2300-z. Epub 2017 Jun 5.

PMID:
28585166
10.

Analysis of microbiota involved in the aged natural fermentation of indigo.

Okamoto T, Aino K, Narihiro T, Matsuyama H, Yumoto I.

World J Microbiol Biotechnol. 2017 Apr;33(4):70. doi: 10.1007/s11274-017-2238-1. Epub 2017 Mar 11.

PMID:
28285451
11.

Corrigendum to Fermentibacillus polygoni gen. nov., sp. nov., an alkaliphile that reduces indigo dye.

Hirota K, Aino K, Yumoto I.

Int J Syst Evol Microbiol. 2016 Sep;66(9):3768. doi: 10.1099/ijsem.0.001423. No abstract available.

PMID:
27902192
12.

Culture-Dependent and -Independent Identification of Polyphosphate-Accumulating Dechloromonas spp. Predominating in a Full-Scale Oxidation Ditch Wastewater Treatment Plant.

Terashima M, Yama A, Sato M, Yumoto I, Kamagata Y, Kato S.

Microbes Environ. 2016 Dec 23;31(4):449-455. doi: 10.1264/jsme2.ME16097. Epub 2016 Nov 19.

13.

Bacterial communities in different locations, seasons and segments of a dairy wastewater treatment system consisting of six segments.

Hirota K, Yokota Y, Sekimura T, Uchiumi H, Guo Y, Ohta H, Yumoto I.

J Environ Sci (China). 2016 Aug;46:109-15. doi: 10.1016/j.jes.2015.09.025. Epub 2016 Mar 9.

PMID:
27521942
14.

Polygonibacillus indicireducens gen. nov., sp. nov., an indigo-reducing and obligate alkaliphile isolated from indigo fermentation liquor for dyeing.

Hirota K, Okamoto T, Matsuyama H, Yumoto I.

Int J Syst Evol Microbiol. 2016 Nov;66(11):4650-4656. doi: 10.1099/ijsem.0.001405. Epub 2016 Aug 8.

PMID:
27503611
15.

Overexpressed Superoxide Dismutase and Catalase Act Synergistically to Protect the Repair of PSII during Photoinhibition in Synechococcus elongatus PCC 7942.

Sae-Tang P, Hihara Y, Yumoto I, Orikasa Y, Okuyama H, Nishiyama Y.

Plant Cell Physiol. 2016 Sep;57(9):1899-907. doi: 10.1093/pcp/pcw110. Epub 2016 Jun 21.

PMID:
27328698
16.

Fermentibacillus polygoni gen. nov., sp. nov., an alkaliphile that reduces indigo dye.

Hirota K, Aino K, Yumoto I.

Int J Syst Evol Microbiol. 2016 Jun;66(6):2247-2253. doi: 10.1099/ijsem.0.001015. Epub 2016 Mar 11. Erratum in: Int J Syst Evol Microbiol. 2016 Sep;66(9):3768.

PMID:
26971318
17.

Contribution of intracellular negative ion capacity to Donnan effect across the membrane in alkaliphilic Bacillus spp.

Goto T, Hirabayashi T, Morimoto H, Yamazaki K, Inoue N, Matsuyama H, Yumoto I.

J Bioenerg Biomembr. 2016 Feb;48(1):87-96. doi: 10.1007/s10863-015-9641-9. Epub 2016 Jan 9.

PMID:
26749514
18.

Methanogenic degradation of lignin-derived monoaromatic compounds by microbial enrichments from rice paddy field soil.

Kato S, Chino K, Kamimura N, Masai E, Yumoto I, Kamagata Y.

Sci Rep. 2015 Sep 24;5:14295. doi: 10.1038/srep14295.

19.

Bioenergetics and the role of soluble cytochromes C for alkaline adaptation in gram-negative alkaliphilic Pseudomonas.

Matsuno T, Yumoto I.

Biomed Res Int. 2015;2015:847945. doi: 10.1155/2015/847945. Epub 2015 Feb 2. Review.

20.

Alteromonas gracilis sp. nov., a marine polysaccharide-producing bacterium.

Matsuyama H, Minami H, Sakaki T, Kasahara H, Baba S, Ishimaru S, Hirota K, Yumoto I.

Int J Syst Evol Microbiol. 2015 May;65(Pt 5):1498-503. doi: 10.1099/ijs.0.000127. Epub 2015 Feb 20.

PMID:
25701844
21.

Psychrobacter oceani sp. nov., isolated from marine sediment.

Matsuyama H, Minami H, Sakaki T, Kasahara H, Watanabe A, Onoda T, Hirota K, Yumoto I.

Int J Syst Evol Microbiol. 2015 May;65(Pt 5):1450-5. doi: 10.1099/ijs.0.000118. Epub 2015 Feb 12.

PMID:
25678681
22.

The effects of elevated CO2 concentration on competitive interaction between aceticlastic and syntrophic methanogenesis in a model microbial consortium.

Kato S, Yoshida R, Yamaguchi T, Sato T, Yumoto I, Kamagata Y.

Front Microbiol. 2014 Oct 30;5:575. doi: 10.3389/fmicb.2014.00575. eCollection 2014.

23.

Isolation of acetogenic bacteria that induce biocorrosion by utilizing metallic iron as the sole electron donor.

Kato S, Yumoto I, Kamagata Y.

Appl Environ Microbiol. 2015 Jan;81(1):67-73. doi: 10.1128/AEM.02767-14. Epub 2014 Oct 10.

24.

Gracilibacillus alcaliphilus sp. nov., a facultative alkaliphile isolated from indigo fermentation liquor for dyeing.

Hirota K, Hanaoka Y, Nodasaka Y, Yumoto I.

Int J Syst Evol Microbiol. 2014 Sep;64(Pt 9):3174-80. doi: 10.1099/ijs.0.060871-0. Epub 2014 Jun 24.

PMID:
24961683
25.

Physiological and transcriptomic analyses of the thermophilic, aceticlastic methanogen Methanosaeta thermophila responding to ammonia stress.

Kato S, Sasaki K, Watanabe K, Yumoto I, Kamagata Y.

Microbes Environ. 2014;29(2):162-7. Epub 2014 Jun 10.

26.

The combination of functional metagenomics and an oil-fed enrichment strategy revealed the phylogenetic diversity of lipolytic bacteria overlooked by the cultivation-based method.

Narihiro T, Suzuki A, Yoshimune K, Hori T, Hoshino T, Yumoto I, Yokota A, Kimura N, Kamagata Y.

Microbes Environ. 2014;29(2):154-61. Epub 2014 May 23.

27.

Growth-dependent catalase localization in Exiguobacterium oxidotolerans T-2-2T reflected by catalase activity of cells.

Hanaoka Y, Takebe F, Nodasaka Y, Hara I, Matsuyama H, Yumoto I.

PLoS One. 2013 Oct 18;8(10):e76862. doi: 10.1371/journal.pone.0076862. eCollection 2013.

28.

Pseudoalteromonas shioyasakiensis sp. nov., a marine polysaccharide-producing bacterium.

Matsuyama H, Sawazaki K, Minami H, Kasahara H, Horikawa K, Yumoto I.

Int J Syst Evol Microbiol. 2014 Jan;64(Pt 1):101-6. doi: 10.1099/ijs.0.055558-0. Epub 2013 Sep 10.

PMID:
24021728
29.

Isolation of butanol- and isobutanol-tolerant bacteria and physiological characterization of their butanol tolerance.

Kanno M, Katayama T, Tamaki H, Mitani Y, Meng XY, Hori T, Narihiro T, Morita N, Hoshino T, Yumoto I, Kimura N, Hanada S, Kamagata Y.

Appl Environ Microbiol. 2013 Nov;79(22):6998-7005. doi: 10.1128/AEM.02900-13. Epub 2013 Sep 6.

30.

Amphibacillus iburiensis sp. nov., an alkaliphile that reduces an indigo dye.

Hirota K, Aino K, Yumoto I.

Int J Syst Evol Microbiol. 2013 Nov;63(Pt 11):4303-8. doi: 10.1099/ijs.0.048009-0. Epub 2013 Jul 5.

PMID:
23832971
31.

Oceanobacillus polygoni sp. nov., a facultatively alkaliphile isolated from indigo fermentation fluid.

Hirota K, Hanaoka Y, Nodasaka Y, Yumoto I.

Int J Syst Evol Microbiol. 2013 Sep;63(Pt 9):3307-12. doi: 10.1099/ijs.0.048595-0. Epub 2013 Mar 15.

PMID:
23504965
32.

Expression of a highly active catalase VktA in the cyanobacterium Synechococcus elongatus PCC 7942 alleviates the photoinhibition of photosystem II.

Jimbo H, Noda A, Hayashi H, Nagano T, Yumoto I, Orikasa Y, Okuyama H, Nishiyama Y.

Photosynth Res. 2013 Nov;117(1-3):509-15. doi: 10.1007/s11120-013-9804-7. Epub 2013 Mar 2.

PMID:
23456267
33.

Efficient colonization of the bean bug Riptortus pedestris by an environmentally transmitted Burkholderia symbiont.

Kikuchi Y, Yumoto I.

Appl Environ Microbiol. 2013 Mar;79(6):2088-91. doi: 10.1128/AEM.03299-12. Epub 2013 Jan 4.

34.

Pseudoalteromonas arabiensis sp. nov., a marine polysaccharide-producing bacterium.

Matsuyama H, Minami H, Kasahara H, Kato Y, Murayama M, Yumoto I.

Int J Syst Evol Microbiol. 2013 May;63(Pt 5):1805-9. doi: 10.1099/ijs.0.043604-0. Epub 2012 Sep 7. Erratum in: Int J Syst Evol Microbiol. 2013 Aug;63(Pt 8):3130.

PMID:
22962336
35.

Oceanobacillus indicireducens sp. nov., a facultative alkaliphile that reduces an indigo dye.

Hirota K, Aino K, Nodasaka Y, Yumoto I.

Int J Syst Evol Microbiol. 2013 Apr;63(Pt 4):1437-42. doi: 10.1099/ijs.0.034579-0. Epub 2012 Jul 27.

PMID:
22843722
36.

Amphibacillus indicireducens sp. nov., an alkaliphile that reduces an indigo dye.

Hirota K, Aino K, Nodasaka Y, Morita N, Yumoto I.

Int J Syst Evol Microbiol. 2013 Feb;63(Pt 2):464-9. doi: 10.1099/ijs.0.037622-0. Epub 2012 Apr 6.

PMID:
22493173
37.

Relationship between rates of respiratory proton extrusion and ATP synthesis in obligately alkaliphilic Bacillus clarkii DSM 8720(T).

Hirabayashi T, Goto T, Morimoto H, Yoshimune K, Matsuyama H, Yumoto I.

J Bioenerg Biomembr. 2012 Apr;44(2):265-72. doi: 10.1007/s10863-012-9430-7. Epub 2012 Mar 22.

PMID:
22437739
38.

Characterization of catalase from psychrotolerant Psychrobacter piscatorii T-3 exhibiting high catalase activity.

Kimoto H, Yoshimune K, Matsuyma H, Yumoto I.

Int J Mol Sci. 2012;13(2):1733-46. doi: 10.3390/ijms13021733. Epub 2012 Feb 7.

39.

Brevibacillus nitrificans sp. nov., a nitrifying bacterium isolated from a microbiological agent for enhancing microbial digestion in sewage treatment tanks.

Takebe F, Hirota K, Nodasaka Y, Yumoto I.

Int J Syst Evol Microbiol. 2012 Sep;62(Pt 9):2121-6. doi: 10.1099/ijs.0.032342-0. Epub 2011 Oct 28.

PMID:
22039003
40.

The impact of aridification and vegetation type on changes in the community structure of methane-cycling microorganisms in Japanese wetland soils.

Narihiro T, Hori T, Nagata O, Hoshino T, Yumoto I, Kamagata Y.

Biosci Biotechnol Biochem. 2011;75(9):1727-34. Epub 2011 Sep 7.

41.

Physiological function of soluble cytochrome c-552 from alkaliphilic Pseudomonas alcaliphila AL15-21(T).

Matsuno T, Yoshimune K, Yumoto I.

J Bioenerg Biomembr. 2011 Oct;43(5):473-81. doi: 10.1007/s10863-011-9376-1. Epub 2011 Jul 16.

PMID:
21766198
42.

Enzymatic total synthesis of gibberellin A₄ from acetate.

Sugai Y, Miyazaki S, Mukai S, Yumoto I, Natsume M, Kawaide H.

Biosci Biotechnol Biochem. 2011;75(1):128-35. Epub 2011 Jan 7.

43.

Pseudomonas toyotomiensis sp. nov., a psychrotolerant facultative alkaliphile that utilizes hydrocarbons.

Hirota K, Yamahira K, Nakajima K, Nodasaka Y, Okuyama H, Yumoto I.

Int J Syst Evol Microbiol. 2011 Aug;61(Pt 8):1842-8. doi: 10.1099/ijs.0.024612-0. Epub 2010 Sep 3.

PMID:
20817837
44.

Bacterial community characterization and dynamics of indigo fermentation.

Aino K, Narihiro T, Minamida K, Kamagata Y, Yoshimune K, Yumoto I.

FEMS Microbiol Ecol. 2010 Oct;74(1):174-83. doi: 10.1111/j.1574-6941.2010.00946.x. Epub 2010 Aug 2.

45.

Enhancement of the nitrogen fixation efficiency of genetically-engineered Rhizobium with high catalase activity.

Orikasa Y, Nodasaka Y, Ohyama T, Okuyama H, Ichise N, Yumoto I, Morita N, Wei M, Ohwada T.

J Biosci Bioeng. 2010 Oct;110(4):397-402. doi: 10.1016/j.jbiosc.2010.04.007. Epub 2010 May 20.

PMID:
20547375
46.

Calditerricola satsumensis gen. nov., sp. nov. and Calditerricola yamamurae sp. nov., extreme thermophiles isolated from a high-temperature compost.

Moriya T, Hikota T, Yumoto I, Ito T, Terui Y, Yamagishi A, Oshima T.

Int J Syst Evol Microbiol. 2011 Mar;61(Pt 3):631-6. doi: 10.1099/ijs.0.018416-0. Epub 2010 Apr 16.

PMID:
20400666
47.

The obligate alkaliphile Bacillus clarkii K24-1U retains extruded protons at the beginning of respiration.

Yoshimune K, Morimoto H, Hirano Y, Sakamoto J, Matsuyama H, Yumoto I.

J Bioenerg Biomembr. 2010 Apr;42(2):111-6. doi: 10.1007/s10863-010-9278-7. Epub 2010 Mar 20.

PMID:
20306123
48.

[Bioenergetics of obligate alkaliphic Bacillus].

Yoshimune K, Yumoto I.

Seikagaku. 2010 Jan;82(1):5-11. Review. Japanese. No abstract available.

PMID:
20169991
49.

Crystal structure of salt-tolerant glutaminase from Micrococcus luteus K-3 in the presence and absence of its product L-glutamate and its activator Tris.

Yoshimune K, Shirakihara Y, Wakayama M, Yumoto I.

FEBS J. 2010 Feb;277(3):738-48. doi: 10.1111/j.1742-4658.2009.07523.x. Epub 2009 Dec 29.

50.

Possible biosynthetic pathways for all cis-3,6,9,12,15,19,22, 25,28-hentriacontanonaene in bacteria.

Sugihara S, Hori R, Nakanowatari H, Takada Y, Yumoto I, Morita N, Yano Y, Watanabe K, Okuyama H.

Lipids. 2010 Feb;45(2):167-77. doi: 10.1007/s11745-009-3380-9.

Supplemental Content

Loading ...
Support Center