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Items: 10

1.

Inferring Protein-Protein Interaction Networks From Mass Spectrometry-Based Proteomic Approaches: A Mini-Review.

Yugandhar K, Gupta S, Yu H.

Comput Struct Biotechnol J. 2019 Jun 20;17:805-811. doi: 10.1016/j.csbj.2019.05.007. eCollection 2019. Review.

2.

PROXiMATE: a database of mutant protein-protein complex thermodynamics and kinetics.

Jemimah S, Yugandhar K, Michael Gromiha M.

Bioinformatics. 2017 Sep 1;33(17):2787-2788. doi: 10.1093/bioinformatics/btx312.

PMID:
28498885
3.

Integrating computational methods and experimental data for understanding the recognition mechanism and binding affinity of protein-protein complexes.

Gromiha MM, Yugandhar K.

Prog Biophys Mol Biol. 2017 Sep;128:33-38. doi: 10.1016/j.pbiomolbio.2017.01.001. Epub 2017 Jan 7. Review.

PMID:
28069340
4.

Protein-protein interactions: scoring schemes and binding affinity.

Gromiha MM, Yugandhar K, Jemimah S.

Curr Opin Struct Biol. 2017 Jun;44:31-38. doi: 10.1016/j.sbi.2016.10.016. Epub 2016 Nov 17. Review.

PMID:
27866112
5.

Important amino acid residues involved in folding and binding of protein-protein complexes.

Kulandaisamy A, Lathi V, ViswaPoorani K, Yugandhar K, Gromiha MM.

Int J Biol Macromol. 2017 Jan;94(Pt A):438-444. doi: 10.1016/j.ijbiomac.2016.10.045. Epub 2016 Oct 17.

PMID:
27765571
6.

Computational Approaches for Predicting Binding Partners, Interface Residues, and Binding Affinity of Protein-Protein Complexes.

Yugandhar K, Gromiha MM.

Methods Mol Biol. 2017;1484:237-253. doi: 10.1007/978-1-4939-6406-2_16.

PMID:
27787830
7.

Analysis of protein-protein interaction networks based on binding affinity.

Yugandhar K, Gromiha MM.

Curr Protein Pept Sci. 2016;17(1):72-81.

PMID:
26412787
8.

Response to the comment on 'protein-protein binding affinity prediction from amino acid sequence'.

Yugandhar K, Gromiha MM.

Bioinformatics. 2015 Mar 15;31(6):978. doi: 10.1093/bioinformatics/btu821. Epub 2014 Dec 12. No abstract available.

PMID:
25505089
9.

Protein-protein binding affinity prediction from amino acid sequence.

Yugandhar K, Gromiha MM.

Bioinformatics. 2014 Dec 15;30(24):3583-9. doi: 10.1093/bioinformatics/btu580. Epub 2014 Aug 28.

PMID:
25172924
10.

Feature selection and classification of protein-protein complexes based on their binding affinities using machine learning approaches.

Yugandhar K, Gromiha MM.

Proteins. 2014 Sep;82(9):2088-96. doi: 10.1002/prot.24564. Epub 2014 Apr 16.

PMID:
24648146

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