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Items: 1 to 50 of 52

1.

Citrullination Controls Dendritic Cell Transdifferentiation into Osteoclasts.

Krishnamurthy A, Ytterberg AJ, Sun M, Sakuraba K, Steen J, Joshua V, Tarasova NK, Malmström V, Wähämaa H, Réthi B, Catrina AI.

J Immunol. 2019 Jun 1;202(11):3143-3150. doi: 10.4049/jimmunol.1800534. Epub 2019 Apr 24.

2.

Posttranslational Targeting of a Recombinant Protein Promotes Its Efficient Secretion into the Escherichia coli Periplasm.

Ytterberg AJ, Zubarev RA, Baumgarten T.

Appl Environ Microbiol. 2019 Jun 17;85(13). pii: e00671-19. doi: 10.1128/AEM.00671-19. Print 2019 Jul 1.

3.

Optimizing Recombinant Protein Production in the Escherichia coli Periplasm Alleviates Stress.

Baumgarten T, Ytterberg AJ, Zubarev RA, de Gier JW.

Appl Environ Microbiol. 2018 May 31;84(12). pii: e00270-18. doi: 10.1128/AEM.00270-18. Print 2018 Jun 15.

4.

Corrigendum: Functional and Structural Characterization of a Novel HLA-DRB1*04:01-Restricted α-Enolase T Cell Epitope in Rheumatoid Arthritis.

Gerstner C, Dubnovitsky A, Sandin C, Kozhukh G, Uchtenhagen H, James EA, Rönnelid J, Ytterberg AJ, Pieper J, Reed E, Tandre K, Rieck M, Zubarev RA, Rönnblom L, Sandalova T, Buckner JH, Achour A, Malmström V.

Front Immunol. 2017 Oct 4;8:1236. doi: 10.3389/fimmu.2017.01236. eCollection 2017.

5.

The SysteMHC Atlas project.

Shao W, Pedrioli PGA, Wolski W, Scurtescu C, Schmid E, Vizcaíno JA, Courcelles M, Schuster H, Kowalewski D, Marino F, Arlehamn CSL, Vaughan K, Peters B, Sette A, Ottenhoff THM, Meijgaarden KE, Nieuwenhuizen N, Kaufmann SHE, Schlapbach R, Castle JC, Nesvizhskii AI, Nielsen M, Deutsch EW, Campbell DS, Moritz RL, Zubarev RA, Ytterberg AJ, Purcell AW, Marcilla M, Paradela A, Wang Q, Costello CE, Ternette N, van Veelen PA, van Els CACM, Heck AJR, de Souza GA, Sollid LM, Admon A, Stevanovic S, Rammensee HG, Thibault P, Perreault C, Bassani-Sternberg M, Aebersold R, Caron E.

Nucleic Acids Res. 2018 Jan 4;46(D1):D1237-D1247. doi: 10.1093/nar/gkx664.

6.

IgG Fc galactosylation predicts response to methotrexate in early rheumatoid arthritis.

Lundström SL, Hensvold AH, Rutishauser D, Klareskog L, Ytterberg AJ, Zubarev RA, Catrina AI.

Arthritis Res Ther. 2017 Aug 9;19(1):182. doi: 10.1186/s13075-017-1389-7.

7.

Autoreactivity to malondialdehyde-modifications in rheumatoid arthritis is linked to disease activity and synovial pathogenesis.

Grönwall C, Amara K, Hardt U, Krishnamurthy A, Steen J, Engström M, Sun M, Ytterberg AJ, Zubarev RA, Scheel-Toellner D, Greenberg JD, Klareskog L, Catrina AI, Malmström V, Silverman GJ.

J Autoimmun. 2017 Nov;84:29-45. doi: 10.1016/j.jaut.2017.06.004. Epub 2017 Jun 21.

PMID:
28647488
8.

Reducing VEGF-B Signaling Ameliorates Renal Lipotoxicity and Protects against Diabetic Kidney Disease.

Falkevall A, Mehlem A, Palombo I, Heller Sahlgren B, Ebarasi L, He L, Ytterberg AJ, Olauson H, Axelsson J, Sundelin B, Patrakka J, Scotney P, Nash A, Eriksson U.

Cell Metab. 2017 Mar 7;25(3):713-726. doi: 10.1016/j.cmet.2017.01.004. Epub 2017 Feb 9.

9.

Cytotoxic and Proinflammatory Effects of Metal-Based Nanoparticles on THP-1 Monocytes Characterized by Combined Proteomics Approaches.

Tarasova NK, Gallud A, Ytterberg AJ, Chernobrovkin A, Aranzaes JR, Astruc D, Antipov A, Fedutik Y, Fadeel B, Zubarev RA.

J Proteome Res. 2017 Feb 3;16(2):689-697. doi: 10.1021/acs.jproteome.6b00747. Epub 2016 Dec 28.

PMID:
27973853
10.

Functional and Structural Characterization of a Novel HLA-DRB1*04:01-Restricted α-Enolase T Cell Epitope in Rheumatoid Arthritis.

Gerstner C, Dubnovitsky A, Sandin C, Kozhukh G, Uchtenhagen H, James EA, Rönnelid J, Ytterberg AJ, Pieper J, Reed E, Tandre K, Rieck M, Zubarev RA, Rönnblom L, Sandalova T, Buckner JH, Achour A, Malmström V.

Front Immunol. 2016 Nov 14;7:494. eCollection 2016. Erratum in: Front Immunol. 2017 Oct 04;8:1236.

11.

Approach for Identifying Human Leukocyte Antigen (HLA)-DR Bound Peptides from Scarce Clinical Samples.

Heyder T, Kohler M, Tarasova NK, Haag S, Rutishauser D, Rivera NV, Sandin C, Mia S, Malmström V, Wheelock ÅM, Wahlström J, Holmdahl R, Eklund A, Zubarev RA, Grunewald J, Ytterberg AJ.

Mol Cell Proteomics. 2016 Sep;15(9):3017-29. doi: 10.1074/mcp.M116.060764. Epub 2016 Jul 24.

12.

Phosphorylation of Leukotriene C4 Synthase at Serine 36 Impairs Catalytic Activity.

Ahmad S, Ytterberg AJ, Thulasingam M, Tholander F, Bergman T, Zubarev R, Wetterholm A, Rinaldo-Matthis A, Haeggström JZ.

J Biol Chem. 2016 Aug 26;291(35):18410-8. doi: 10.1074/jbc.M116.735647. Epub 2016 Jun 30.

13.

Establishing a Proteomics-Based Monocyte Assay To Assess Differential Innate Immune Activation Responses.

Tarasova NK, Ytterberg AJ, Lundberg K, Zhang XM, Harris RA, Zubarev RA.

J Proteome Res. 2016 Jul 1;15(7):2337-45. doi: 10.1021/acs.jproteome.6b00422. Epub 2016 Jun 3.

PMID:
27223872
14.

Antibodies to carbamylated α-enolase epitopes in rheumatoid arthritis also bind citrullinated epitopes and are largely indistinct from anti-citrullinated protein antibodies.

Reed E, Jiang X, Kharlamova N, Ytterberg AJ, Catrina AI, Israelsson L, Mathsson-Alm L, Hansson M, Alfredsson L, Rönnelid J, Lundberg K.

Arthritis Res Ther. 2016 May 4;18(1):96. doi: 10.1186/s13075-016-1001-6.

15.

Identification of a novel chemokine-dependent molecular mechanism underlying rheumatoid arthritis-associated autoantibody-mediated bone loss.

Krishnamurthy A, Joshua V, Haj Hensvold A, Jin T, Sun M, Vivar N, Ytterberg AJ, Engström M, Fernandes-Cerqueira C, Amara K, Magnusson M, Wigerblad G, Kato J, Jiménez-Andrade JM, Tyson K, Rapecki S, Lundberg K, Catrina SB, Jakobsson PJ, Svensson C, Malmström V, Klareskog L, Wähämaa H, Catrina AI.

Ann Rheum Dis. 2016 Apr;75(4):721-9. doi: 10.1136/annrheumdis-2015-208093. Epub 2015 Nov 26. Erratum in: Ann Rheum Dis. 2019 Jun;78(6):866.

16.

Development of autoantibodies against muscle-specific FHL1 in severe inflammatory myopathies.

Albrecht I, Wick C, Hallgren Å, Tjärnlund A, Nagaraju K, Andrade F, Thompson K, Coley W, Phadke A, Diaz-Gallo LM, Bottai M, Nennesmo I, Chemin K, Herrath J, Johansson K, Wikberg A, Ytterberg AJ, Zubarev RA, Danielsson O, Krystufkova O, Vencovsky J, Landegren N, Wahren-Herlenius M, Padyukov L, Kämpe O, Lundberg IE.

J Clin Invest. 2015 Dec;125(12):4612-24. doi: 10.1172/JCI81031. Epub 2015 Nov 9.

17.

Release of Active Peptidyl Arginine Deiminases by Neutrophils Can Explain Production of Extracellular Citrullinated Autoantigens in Rheumatoid Arthritis Synovial Fluid.

Spengler J, Lugonja B, Ytterberg AJ, Zubarev RA, Creese AJ, Pearson MJ, Grant MM, Milward M, Lundberg K, Buckley CD, Filer A, Raza K, Cooper PR, Chapple IL, Scheel-Toellner D.

Arthritis Rheumatol. 2015 Dec;67(12):3135-45. doi: 10.1002/art.39313.

18.

Proteomics Reveals a Role for Attachment in Monocyte Differentiation into Efficient Proinflammatory Macrophages.

Tarasova NK, Ytterberg AJ, Lundberg K, Zhang XM, Harris RA, Zubarev RA.

J Proteome Res. 2015 Sep 4;14(9):3940-7. doi: 10.1021/acs.jproteome.5b00659. Epub 2015 Aug 11.

PMID:
26216291
19.

Effect of host plant and immune challenge on the levels of chemosensory and odorant-binding proteins in caterpillar salivary glands.

Celorio-Mancera Mde L, Ytterberg AJ, Rutishauser D, Janz N, Zubarev RA.

Insect Biochem Mol Biol. 2015 Jun;61:34-45. doi: 10.1016/j.ibmb.2015.04.006. Epub 2015 Apr 29. Erratum in: Insect Biochem Mol Biol. 2015 Sep;64:128.

PMID:
25934166
20.

Mining proteomic data to expose protein modifications in Methanosarcina mazei strain Gö1.

Leon DR, Ytterberg AJ, Boontheung P, Kim U, Loo JA, Gunsalus RP, Ogorzalek Loo RR.

Front Microbiol. 2015 Mar 5;6:149. doi: 10.3389/fmicb.2015.00149. eCollection 2015.

21.

IgG antibodies to cyclic citrullinated peptides exhibit profiles specific in terms of IgG subclasses, Fc-glycans and a fab-Peptide sequence.

Lundström SL, Fernandes-Cerqueira C, Ytterberg AJ, Ossipova E, Hensvold AH, Jakobsson PJ, Malmström V, Catrina AI, Klareskog L, Lundberg K, Zubarev RA.

PLoS One. 2014 Nov 26;9(11):e113924. doi: 10.1371/journal.pone.0113924. eCollection 2014.

22.

Lungs, joints and immunity against citrullinated proteins in rheumatoid arthritis.

Catrina AI, Ytterberg AJ, Reynisdottir G, Malmström V, Klareskog L.

Nat Rev Rheumatol. 2014 Nov;10(11):645-53. doi: 10.1038/nrrheum.2014.115. Epub 2014 Jul 29. Review.

PMID:
25072264
23.

Shared immunological targets in the lungs and joints of patients with rheumatoid arthritis: identification and validation.

Ytterberg AJ, Joshua V, Reynisdottir G, Tarasova NK, Rutishauser D, Ossipova E, Haj Hensvold A, Eklund A, Sköld CM, Grunewald J, Malmström V, Jakobsson PJ, Rönnelid J, Padyukov L, Zubarev RA, Klareskog L, Catrina AI.

Ann Rheum Dis. 2015 Sep;74(9):1772-7. doi: 10.1136/annrheumdis-2013-204912. Epub 2014 May 9.

PMID:
24817415
24.

Natural polymorphisms in Tap2 influence negative selection and CD4∶CD8 lineage commitment in the rat.

Tuncel J, Haag S, Yau AC, Norin U, Baud A, Lönnblom E, Maratou K, Ytterberg AJ, Ekman D, Thordardottir S, Johannesson M, Gillett A; EURATRANS Consortium, Stridh P, Jagodic M, Olsson T, Fernández-Teruel A, Zubarev RA, Mott R, Aitman TJ, Flint J, Holmdahl R.

PLoS Genet. 2014 Feb 20;10(2):e1004151. doi: 10.1371/journal.pgen.1004151. eCollection 2014 Feb.

25.

Optimizing heterologous protein production in the periplasm of E. coli by regulating gene expression levels.

Schlegel S, Rujas E, Ytterberg AJ, Zubarev RA, Luirink J, de Gier JW.

Microb Cell Fact. 2013 Mar 12;12:24. doi: 10.1186/1475-2859-12-24.

26.

Heightened immune response to autocitrullinated Porphyromonas gingivalis peptidylarginine deiminase: a potential mechanism for breaching immunologic tolerance in rheumatoid arthritis.

Quirke AM, Lugli EB, Wegner N, Hamilton BC, Charles P, Chowdhury M, Ytterberg AJ, Zubarev RA, Potempa J, Culshaw S, Guo Y, Fisher BA, Thiele G, Mikuls TR, Venables PJ.

Ann Rheum Dis. 2014 Jan;73(1):263-9. doi: 10.1136/annrheumdis-2012-202726. Epub 2013 Mar 5.

27.

Ways forward to identify new ACPA targets in RA.

Ytterberg AJ, Malmström V.

Arthritis Res Ther. 2012 Sep 24;14(5):124. doi: 10.1186/ar4031.

28.

Chemosensory proteins, major salivary factors in caterpillar mandibular glands.

Celorio-Mancera Mde L, Sundmalm SM, Vogel H, Rutishauser D, Ytterberg AJ, Zubarev RA, Janz N.

Insect Biochem Mol Biol. 2012 Oct;42(10):796-805. doi: 10.1016/j.ibmb.2012.07.008. Epub 2012 Aug 4.

PMID:
22885177
29.

Heme binding in gas-phase holo-myoglobin cations: distal becomes proximal?

Enyenihi AA, Yang H, Ytterberg AJ, Lyutvinskiy Y, Zubarev RA.

J Am Soc Mass Spectrom. 2011 Oct;22(10):1763-70. doi: 10.1007/s13361-011-0182-0. Epub 2011 Jul 19.

PMID:
21952890
30.

Characterization of morphine-glucose-6-phosphate dehydrogenase conjugates by mass spectrometry.

Chiu ML, Ytterberg AJ, Ogorzalek Loo RR, Loo JA, Monbouquette HG.

Bioconjug Chem. 2011 Aug 17;22(8):1595-604. doi: 10.1021/bc2001352. Epub 2011 Jul 7.

31.

Characterization of the consequences of YidC depletion on the inner membrane proteome of E. coli using 2D blue native/SDS-PAGE.

Wickström D, Wagner S, Simonsson P, Pop O, Baars L, Ytterberg AJ, van Wijk KJ, Luirink J, de Gier JW.

J Mol Biol. 2011 Jun 3;409(2):124-35. doi: 10.1016/j.jmb.2011.03.068. Epub 2011 Apr 8.

PMID:
21497606
32.

Consequences of depletion of the signal recognition particle in Escherichia coli.

Wickström D, Wagner S, Baars L, Ytterberg AJ, Klepsch M, van Wijk KJ, Luirink J, de Gier JW.

J Biol Chem. 2011 Feb 11;286(6):4598-609. doi: 10.1074/jbc.M109.081935. Epub 2010 Oct 5.

33.

Modification-specific proteomics in plant biology.

Ytterberg AJ, Jensen ON.

J Proteomics. 2010 Oct 10;73(11):2249-66. doi: 10.1016/j.jprot.2010.06.002. Epub 2010 Jun 10. Review.

PMID:
20541636
34.

Negative feedback in noncanonical NF-kappaB signaling modulates NIK stability through IKKalpha-mediated phosphorylation.

Razani B, Zarnegar B, Ytterberg AJ, Shiba T, Dempsey PW, Ware CF, Loo JA, Cheng G.

Sci Signal. 2010 May 25;3(123):ra41. doi: 10.1126/scisignal.2000778.

35.

Mapping of drebrin binding site on F-actin.

Grintsevich EE, Galkin VE, Orlova A, Ytterberg AJ, Mikati MM, Kudryashov DS, Loo JA, Egelman EH, Reisler E.

J Mol Biol. 2010 May 14;398(4):542-54. doi: 10.1016/j.jmb.2010.03.039. Epub 2010 Mar 27.

36.

Metabolic crisis after traumatic brain injury is associated with a novel microdialysis proteome.

Lakshmanan R, Loo JA, Drake T, Leblanc J, Ytterberg AJ, McArthur DL, Etchepare M, Vespa PM.

Neurocrit Care. 2010 Jun;12(3):324-36. doi: 10.1007/s12028-010-9342-5.

37.

Integration of protein processing steps on a droplet microfluidics platform for MALDI-MS analysis.

Chatterjee D, Ytterberg AJ, Son SU, Loo JA, Garrell RL.

Anal Chem. 2010 Mar 1;82(5):2095-101. doi: 10.1021/ac9029373.

PMID:
20146460
38.

S-layer, surface-accessible, and concanavalin A binding proteins of Methanosarcina acetivorans and Methanosarcina mazei.

Francoleon DR, Boontheung P, Yang Y, Kin U, Ytterberg AJ, Denny PA, Denny PC, Loo JA, Gunsalus RP, Loo RR.

J Proteome Res. 2009 Apr;8(4):1972-82. doi: 10.1021/pr800923e.

39.

Connecting actin monomers by iso-peptide bond is a toxicity mechanism of the Vibrio cholerae MARTX toxin.

Kudryashov DS, Durer ZA, Ytterberg AJ, Sawaya MR, Pashkov I, Prochazkova K, Yeates TO, Loo RR, Loo JA, Satchell KJ, Reisler E.

Proc Natl Acad Sci U S A. 2008 Nov 25;105(47):18537-42. doi: 10.1073/pnas.0808082105. Epub 2008 Nov 17.

40.

Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis.

Rutschow H, Ytterberg AJ, Friso G, Nilsson R, van Wijk KJ.

Plant Physiol. 2008 Sep;148(1):156-75. doi: 10.1104/pp.108.124545. Epub 2008 Jul 16.

41.

Consequences of C4 differentiation for chloroplast membrane proteomes in maize mesophyll and bundle sheath cells.

Majeran W, Zybailov B, Ytterberg AJ, Dunsmore J, Sun Q, van Wijk KJ.

Mol Cell Proteomics. 2008 Sep;7(9):1609-38. doi: 10.1074/mcp.M800016-MCP200. Epub 2008 May 2.

42.

Effects of SecE depletion on the inner and outer membrane proteomes of Escherichia coli.

Baars L, Wagner S, Wickström D, Klepsch M, Ytterberg AJ, van Wijk KJ, de Gier JW.

J Bacteriol. 2008 May;190(10):3505-25. doi: 10.1128/JB.01631-07. Epub 2008 Feb 22.

43.

Consequences of membrane protein overexpression in Escherichia coli.

Wagner S, Baars L, Ytterberg AJ, Klussmeier A, Wagner CS, Nord O, Nygren PA, van Wijk KJ, de Gier JW.

Mol Cell Proteomics. 2007 Sep;6(9):1527-50. Epub 2007 Apr 19.

44.

Analyses of the secretomes of Erwinia amylovora and selected hrp mutants reveal novel type III secreted proteins and an effect of HrpJ on extracellular harpin levels.

Nissinen RM, Ytterberg AJ, Bogdanove AJ, VAN Wijk KJ, Beer SV.

Mol Plant Pathol. 2007 Jan;8(1):55-67. doi: 10.1111/j.1364-3703.2006.00370.x.

PMID:
20507478
45.
46.

Defining the role of the Escherichia coli chaperone SecB using comparative proteomics.

Baars L, Ytterberg AJ, Drew D, Wagner S, Thilo C, van Wijk KJ, de Gier JW.

J Biol Chem. 2006 Apr 14;281(15):10024-34. Epub 2005 Dec 13.

47.

The oligomeric stromal proteome of Arabidopsis thaliana chloroplasts.

Peltier JB, Cai Y, Sun Q, Zabrouskov V, Giacomelli L, Rudella A, Ytterberg AJ, Rutschow H, van Wijk KJ.

Mol Cell Proteomics. 2006 Jan;5(1):114-33. Epub 2005 Oct 4.

48.

The pathogen-inducible nitric oxide synthase (iNOS) in plants is a variant of the P protein of the glycine decarboxylase complex.

Klessig DF, Ytterberg AJ, van Wijk KJ.

Cell. 2004 Oct 29;119(3):445. No abstract available.

49.

Affinity purification of the tobacco plastid RNA polymerase and in vitro reconstitution of the holoenzyme.

Suzuki JY, Ytterberg AJ, Beardslee TA, Allison LA, Wijk KJ, Maliga P.

Plant J. 2004 Oct;40(1):164-72.

50.

New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy.

Peltier JB, Ytterberg AJ, Sun Q, van Wijk KJ.

J Biol Chem. 2004 Nov 19;279(47):49367-83. Epub 2004 Aug 20.

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