Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 17

1.

Data Analysis for DNA Stable Isotope Probing Experiments Using Multiple Window High-Resolution SIP.

Barnett SE, Youngblut ND, Buckley DH.

Methods Mol Biol. 2019;2046:109-128. doi: 10.1007/978-1-4939-9721-3_9.

PMID:
31407300
2.

Host diet and evolutionary history explain different aspects of gut microbiome diversity among vertebrate clades.

Youngblut ND, Reischer GH, Walters W, Schuster N, Walzer C, Stalder G, Ley RE, Farnleitner AH.

Nat Commun. 2019 May 16;10(1):2200. doi: 10.1038/s41467-019-10191-3.

3.

Human Salivary Amylase Gene Copy Number Impacts Oral and Gut Microbiomes.

Poole AC, Goodrich JK, Youngblut ND, Luque GG, Ruaud A, Sutter JL, Waters JL, Shi Q, El-Hadidi M, Johnson LM, Bar HY, Huson DH, Booth JG, Ley RE.

Cell Host Microbe. 2019 Apr 10;25(4):553-564.e7. doi: 10.1016/j.chom.2019.03.001.

PMID:
30974084
4.

Virome Diversity Correlates with Intestinal Microbiome Diversity in Adult Monozygotic Twins.

Moreno-Gallego JL, Chou SP, Di Rienzi SC, Goodrich JK, Spector TD, Bell JT, Youngblut ND, Hewson I, Reyes A, Ley RE.

Cell Host Microbe. 2019 Feb 13;25(2):261-272.e5. doi: 10.1016/j.chom.2019.01.019.

PMID:
30763537
5.

SIPSim: A Modeling Toolkit to Predict Accuracy and Aid Design of DNA-SIP Experiments.

Youngblut ND, Barnett SE, Buckley DH.

Front Microbiol. 2018 Mar 28;9:570. doi: 10.3389/fmicb.2018.00570. eCollection 2018.

6.

Plant Phylogeny and Life History Shape Rhizosphere Bacterial Microbiome of Summer Annuals in an Agricultural Field.

Emmett BD, Youngblut ND, Buckley DH, Drinkwater LE.

Front Microbiol. 2017 Dec 11;8:2414. doi: 10.3389/fmicb.2017.02414. eCollection 2017.

7.

HTSSIP: An R package for analysis of high throughput sequencing data from nucleic acid stable isotope probing (SIP) experiments.

Youngblut ND, Barnett SE, Buckley DH.

PLoS One. 2018 Jan 3;13(1):e0189616. doi: 10.1371/journal.pone.0189616. eCollection 2018.

8.

Differentiation and Structure in Sulfolobus islandicus Rod-Shaped Virus Populations.

Bautista MA, Black JA, Youngblut ND, Whitaker RJ.

Viruses. 2017 May 19;9(5). pii: E120. doi: 10.3390/v9050120.

9.

Metagenomic evidence for reciprocal particle exchange between the mainstem estuary and lateral bay sediments of the lower Columbia River.

Smith MW, Davis RE, Youngblut ND, Kärnä T, Herfort L, Whitaker RJ, Metcalf WW, Tebo BM, Baptista AM, Simon HM.

Front Microbiol. 2015 Oct 1;6:1074. doi: 10.3389/fmicb.2015.01074. eCollection 2015.

10.

Genomic and phenotypic differentiation among Methanosarcina mazei populations from Columbia River sediment.

Youngblut ND, Wirth JS, Henriksen JR, Smith M, Simon H, Metcalf WW, Whitaker RJ.

ISME J. 2015 Oct;9(10):2191-205. doi: 10.1038/ismej.2015.31. Epub 2015 Mar 10.

11.

Intra-genomic variation in G + C content and its implications for DNA stable isotope probing.

Youngblut ND, Buckley DH.

Environ Microbiol Rep. 2014 Dec;6(6):767-75. doi: 10.1111/1758-2229.12201. Epub 2014 Oct 7.

PMID:
25139123
12.

Phytoplankton succession affects the composition of Polynucleobacter subtypes in humic lakes.

Paver SF, Youngblut ND, Whitaker RJ, Kent AD.

Environ Microbiol. 2015 Mar;17(3):816-28. doi: 10.1111/1462-2920.12529. Epub 2014 Jul 9.

PMID:
24912130
13.

Differentiation between sediment and hypolimnion methanogen communities in humic lakes.

Youngblut ND, Dell'aringa M, Whitaker RJ.

Environ Microbiol. 2014 May;16(5):1411-23. doi: 10.1111/1462-2920.12330. Epub 2013 Dec 10.

PMID:
24237594
14.

Lineage-specific responses of microbial communities to environmental change.

Youngblut ND, Shade A, Read JS, McMahon KD, Whitaker RJ.

Appl Environ Microbiol. 2013 Jan;79(1):39-47. doi: 10.1128/AEM.02226-12. Epub 2012 Oct 12.

15.

Millimeter-scale patterns of phylogenetic and trait diversity in a salt marsh microbial mat.

Armitage DW, Gallagher KL, Youngblut ND, Buckley DH, Zinder SH.

Front Microbiol. 2012 Aug 10;3:293. doi: 10.3389/fmicb.2012.00293. eCollection 2012.

16.

Lake microbial communities are resilient after a whole-ecosystem disturbance.

Shade A, Read JS, Youngblut ND, Fierer N, Knight R, Kratz TK, Lottig NR, Roden EE, Stanley EH, Stombaugh J, Whitaker RJ, Wu CH, McMahon KD.

ISME J. 2012 Dec;6(12):2153-67. doi: 10.1038/ismej.2012.56. Epub 2012 Jun 28.

17.

Spatial structure and persistence of methanogen populations in humic bog lakes.

Milferstedt K, Youngblut ND, Whitaker RJ.

ISME J. 2010 Jun;4(6):764-76. doi: 10.1038/ismej.2010.7. Epub 2010 Feb 25.

PMID:
20182522

Supplemental Content

Loading ...
Support Center