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Items: 1 to 50 of 131

1.

Biphasic recruitment of TRF2 to DNA damage sites promotes non-sister chromatid homologous recombination repair.

Kong X, Cruz GMS, Trinh SL, Zhu XD, Berns MW, Yokomori K.

J Cell Sci. 2018 Dec 5;131(23). pii: jcs219311. doi: 10.1242/jcs.219311.

PMID:
30404833
2.

Prostaglandin E-major urinary metabolite as a noninvasive surrogate marker for infantile necrotizing enterocolitis.

Konishi KI, Yoshida M, Nakao A, Tsuchiya K, Tsurisawa C, Ichiki K, Takeda T, Hisaeda Y, Hirota A, Amagata S, Odashima T, Yokomori K, Ishida K, Matsuura M, Ito S, Fujiwara M, Nakahara S.

J Pediatr Surg. 2018 Sep 13. pii: S0022-3468(18)30551-7. doi: 10.1016/j.jpedsurg.2018.08.044. [Epub ahead of print]

PMID:
30291024
3.

Laser Microirradiation to Study In Vivo Cellular Responses to Simple and Complex DNA Damage.

Kong X, Cruz GMS, Silva BA, Wakida NM, Khatibzadeh N, Berns MW, Yokomori K.

J Vis Exp. 2018 Jan 31;(131). doi: 10.3791/56213.

PMID:
29443023
4.

The effect of Nipped-B-like (Nipbl) haploinsufficiency on genome-wide cohesin binding and target gene expression: modeling Cornelia de Lange syndrome.

Newkirk DA, Chen YY, Chien R, Zeng W, Biesinger J, Flowers E, Kawauchi S, Santos R, Calof AL, Lander AD, Xie X, Yokomori K.

Clin Epigenetics. 2017 Aug 25;9:89. doi: 10.1186/s13148-017-0391-x. eCollection 2017.

5.

The Use of Laser Microirradiation to Investigate the Roles of Cohesins in DNA Repair.

Kong X, Ball AR Jr, Yokomori K.

Methods Mol Biol. 2017;1515:227-242.

PMID:
27797083
6.

Single-nucleus RNA-seq of differentiating human myoblasts reveals the extent of fate heterogeneity.

Zeng W, Jiang S, Kong X, El-Ali N, Ball AR Jr, Ma CI, Hashimoto N, Yokomori K, Mortazavi A.

Nucleic Acids Res. 2016 Dec 1;44(21):e158. Epub 2016 Aug 26.

7.

Femtosecond near-infrared laser microirradiation reveals a crucial role for PARP signaling on factor assemblies at DNA damage sites.

Saquilabon Cruz GM, Kong X, Silva BA, Khatibzadeh N, Thai R, Berns MW, Yokomori K.

Nucleic Acids Res. 2016 Feb 18;44(3):e27. doi: 10.1093/nar/gkv976. Epub 2015 Sep 30.

8.

Clinical, developmental and molecular update on Cornelia de Lange syndrome and the cohesin complex: abstracts from the 2014 Scientific and Educational Symposium.

Kline AD, Calof AL, Lander AD, Gerton JL, Krantz ID, Dorsett D, Deardorff MA, Blagowidow N, Yokomori K, Shirahige K, Santos R, Woodman J, Megee PC, O'Connor JT, Egense A, Noon S, Belote M, Goodban MT, Hansen BD, Timmons JG, Musio A, Ishman SL, Bryan Y, Wu Y, Bettini LR, Mehta D, Zakari M, Mills JA, Srivastava S, Haaland RE.

Am J Med Genet A. 2015 Jun;167(6):1179-92. doi: 10.1002/ajmg.a.37056. Epub 2015 Apr 21.

PMID:
25899772
9.

Combination of low level light therapy and nitrosyl-cobinamide accelerates wound healing.

Spitler R, Ho H, Norpetlian F, Kong X, Jiang J, Yokomori K, Andersen B, Boss GR, Berns MW.

J Biomed Opt. 2015 May;20(5):051022. doi: 10.1117/1.JBO.20.5.051022.

10.

Concerted activities of distinct H4K20 methyltransferases at DNA double-strand breaks regulate 53BP1 nucleation and NHEJ-directed repair.

Tuzon CT, Spektor T, Kong X, Congdon LM, Wu S, Schotta G, Yokomori K, Rice JC.

Cell Rep. 2014 Jul 24;8(2):430-8. doi: 10.1016/j.celrep.2014.06.013. Epub 2014 Jul 4.

11.

Chromatin dynamics during DNA repair revealed by pair correlation analysis of molecular flow in the nucleus.

Hinde E, Kong X, Yokomori K, Gratton E.

Biophys J. 2014 Jul 1;107(1):55-65. doi: 10.1016/j.bpj.2014.05.027.

12.

DNA damage to a single chromosome end delays anaphase onset.

Silva BA, Stambaugh JR, Yokomori K, Shah JV, Berns MW.

J Biol Chem. 2014 Aug 15;289(33):22771-84. doi: 10.1074/jbc.M113.535955. Epub 2014 Jun 30.

13.

Genetic and epigenetic characteristics of FSHD-associated 4q and 10q D4Z4 that are distinct from non-4q/10q D4Z4 homologs.

Zeng W, Chen YY, Newkirk DA, Wu B, Balog J, Kong X, Ball AR Jr, Zanotti S, Tawil R, Hashimoto N, Mortazavi A, van der Maarel SM, Yokomori K.

Hum Mutat. 2014 Aug;35(8):998-1010. doi: 10.1002/humu.22593. Epub 2014 Jun 24.

14.

Fluctuation-based imaging of nuclear Rac1 activation by protein oligomerisation.

Hinde E, Yokomori K, Gaus K, Hahn KM, Gratton E.

Sci Rep. 2014 Feb 27;4:4219. doi: 10.1038/srep04219.

15.

Cornelia de Lange syndrome: further delineation of phenotype, cohesin biology and educational focus, 5th Biennial Scientific and Educational Symposium abstracts.

Kline AD, Calof AL, Schaaf CA, Krantz ID, Jyonouchi S, Yokomori K, Gauze M, Carrico CS, Woodman J, Gerton JL, Vega H, Levin AV, Shirahige K, Champion M, Goodban MT, O'Connor JT, Pipan M, Horsfield J, Deardorff MA, Ishman SL, Dorsett D.

Am J Med Genet A. 2014 Jun;164A(6):1384-93. doi: 10.1002/ajmg.a.36417. Epub 2014 Feb 6.

PMID:
24504889
16.

Distinct functions of human cohesin-SA1 and cohesin-SA2 in double-strand break repair.

Kong X, Ball AR Jr, Pham HX, Zeng W, Chen HY, Schmiesing JA, Kim JS, Berns M, Yokomori K.

Mol Cell Biol. 2014 Feb;34(4):685-98. doi: 10.1128/MCB.01503-13. Epub 2013 Dec 9.

17.

Mechanisms of cohesin-mediated gene regulation and lessons learned from cohesinopathies.

Ball AR Jr, Chen YY, Yokomori K.

Biochim Biophys Acta. 2014 Mar;1839(3):191-202. doi: 10.1016/j.bbagrm.2013.11.002. Epub 2013 Nov 22. Review.

18.

Nitrosyl-cobinamide (NO-Cbi), a new nitric oxide donor, improves wound healing through cGMP/cGMP-dependent protein kinase.

Spitler R, Schwappacher R, Wu T, Kong X, Yokomori K, Pilz RB, Boss GR, Berns MW.

Cell Signal. 2013 Dec;25(12):2374-82. doi: 10.1016/j.cellsig.2013.07.029. Epub 2013 Aug 3.

19.

Scc1 sumoylation by Mms21 promotes sister chromatid recombination through counteracting Wapl.

Wu N, Kong X, Ji Z, Zeng W, Potts PR, Yokomori K, Yu H.

Genes Dev. 2012 Jul 1;26(13):1473-85. doi: 10.1101/gad.193615.112.

20.

Correlation analysis of clinical parameters with epigenetic modifications in the DUX4 promoter in FSHD.

Balog J, Thijssen PE, de Greef JC, Shah B, van Engelen BG, Yokomori K, Tapscott SJ, Tawil R, van der Maarel SM.

Epigenetics. 2012 Jun 1;7(6):579-84. doi: 10.4161/epi.20001. Epub 2012 Jun 1.

21.

AREM: aligning short reads from ChIP-sequencing by expectation maximization.

Newkirk D, Biesinger J, Chon A, Yokomori K, Xie X.

J Comput Biol. 2011 Nov;18(11):1495-505. doi: 10.1089/cmb.2011.0185. Epub 2011 Oct 28.

22.

Condensin I recruitment to base damage-enriched DNA lesions is modulated by PARP1.

Kong X, Stephens J, Ball AR Jr, Heale JT, Newkirk DA, Berns MW, Yokomori K.

PLoS One. 2011;6(8):e23548. doi: 10.1371/journal.pone.0023548. Epub 2011 Aug 12.

23.

Cohesin: a critical chromatin organizer in mammalian gene regulation.

Chien R, Zeng W, Ball AR, Yokomori K.

Biochem Cell Biol. 2011 Oct;89(5):445-58. doi: 10.1139/o11-039. Epub 2011 Aug 18. Review.

24.

Damage site chromatin: open or closed?

Ball AR Jr, Yokomori K.

Curr Opin Cell Biol. 2011 Jun;23(3):277-83. doi: 10.1016/j.ceb.2011.03.012. Epub 2011 Apr 12. Review.

25.

Cohesin mediates chromatin interactions that regulate mammalian β-globin expression.

Chien R, Zeng W, Kawauchi S, Bender MA, Santos R, Gregson HC, Schmiesing JA, Newkirk DA, Kong X, Ball AR Jr, Calof AL, Lander AD, Groudine MT, Yokomori K.

J Biol Chem. 2011 May 20;286(20):17870-8. doi: 10.1074/jbc.M110.207365. Epub 2011 Mar 29.

26.

Dynamic regulation of the PR-Set7 histone methyltransferase is required for normal cell cycle progression.

Wu S, Wang W, Kong X, Congdon LM, Yokomori K, Kirschner MW, Rice JC.

Genes Dev. 2010 Nov 15;24(22):2531-42. doi: 10.1101/gad.1984210. Epub 2010 Oct 21.

27.

Analysis of DNA double-strand break response and chromatin structure in mitosis using laser microirradiation.

Gomez-Godinez V, Wu T, Sherman AJ, Lee CS, Liaw LH, Zhongsheng Y, Yokomori K, Berns MW.

Nucleic Acids Res. 2010 Dec;38(22):e202. doi: 10.1093/nar/gkq836. Epub 2010 Oct 4.

28.

HP1: heterochromatin binding proteins working the genome.

Zeng W, Ball AR Jr, Yokomori K.

Epigenetics. 2010 May 16;5(4):287-92. Epub 2010 May 3. Review.

29.

Spatially sculpted laser scissors for study of DNA damage and repair.

Stephens J, Mohanty SK, Genc S, Kong X, Yokomori K, Berns MW.

J Biomed Opt. 2009 Sep-Oct;14(5):054004. doi: 10.1117/1.3213601.

30.

The annealing helicase HARP is recruited to DNA repair sites via an interaction with RPA.

Yusufzai T, Kong X, Yokomori K, Kadonaga JT.

Genes Dev. 2009 Oct 15;23(20):2400-4. doi: 10.1101/gad.1831509. Epub 2009 Sep 30.

31.

Multiple organ system defects and transcriptional dysregulation in the Nipbl(+/-) mouse, a model of Cornelia de Lange Syndrome.

Kawauchi S, Calof AL, Santos R, Lopez-Burks ME, Young CM, Hoang MP, Chua A, Lao T, Lechner MS, Daniel JA, Nussenzweig A, Kitzes L, Yokomori K, Hallgrimsson B, Lander AD.

PLoS Genet. 2009 Sep;5(9):e1000650. doi: 10.1371/journal.pgen.1000650. Epub 2009 Sep 18.

32.

Specific loss of histone H3 lysine 9 trimethylation and HP1gamma/cohesin binding at D4Z4 repeats is associated with facioscapulohumeral dystrophy (FSHD).

Zeng W, de Greef JC, Chen YY, Chien R, Kong X, Gregson HC, Winokur ST, Pyle A, Robertson KD, Schmiesing JA, Kimonis VE, Balog J, Frants RR, Ball AR Jr, Lock LF, Donovan PJ, van der Maarel SM, Yokomori K.

PLoS Genet. 2009 Jul;5(7):e1000559. doi: 10.1371/journal.pgen.1000559. Epub 2009 Jul 10.

33.

Revisiting the role of heterochromatin protein 1 in DNA repair.

Ball AR Jr, Yokomori K.

J Cell Biol. 2009 May 18;185(4):573-5. doi: 10.1083/jcb.200904033. Review.

34.

Identification and metastatic potential of tumor-initiating cells in malignant rhabdoid tumor of the kidney.

Yanagisawa S, Kadouchi I, Yokomori K, Hirose M, Hakozaki M, Hojo H, Maeda K, Kobayashi E, Murakami T.

Clin Cancer Res. 2009 May 1;15(9):3014-22. doi: 10.1158/1078-0432.CCR-08-2237. Epub 2009 Apr 21.

35.

Comparative analysis of different laser systems to study cellular responses to DNA damage in mammalian cells.

Kong X, Mohanty SK, Stephens J, Heale JT, Gomez-Godinez V, Shi LZ, Kim JS, Yokomori K, Berns MW.

Nucleic Acids Res. 2009 May;37(9):e68. doi: 10.1093/nar/gkp221. Epub 2009 Apr 7.

36.

Cohesin associates with spindle poles in a mitosis-specific manner and functions in spindle assembly in vertebrate cells.

Kong X, Ball AR Jr, Sonoda E, Feng J, Takeda S, Fukagawa T, Yen TJ, Yokomori K.

Mol Biol Cell. 2009 Mar;20(5):1289-301. doi: 10.1091/mbc.E08-04-0419. Epub 2008 Dec 30.

37.

Cohesins functionally associate with CTCF on mammalian chromosome arms.

Parelho V, Hadjur S, Spivakov M, Leleu M, Sauer S, Gregson HC, Jarmuz A, Canzonetta C, Webster Z, Nesterova T, Cobb BS, Yokomori K, Dillon N, Aragon L, Fisher AG, Merkenschlager M.

Cell. 2008 Feb 8;132(3):422-33. doi: 10.1016/j.cell.2008.01.011. Epub 2008 Jan 31.

38.

Damage-induced reactivation of cohesin in postreplicative DNA repair.

Ball AR Jr, Yokomori K.

Bioessays. 2008 Jan;30(1):5-9. Review.

39.

Cholelithiasis and choledocholithiasis associated with anomalous junction of the cystic duct in a child.

Yanagisawa S, Oue T, Odashima T, Kuda M, Tanabe Y, Yokomori K.

J Pediatr Surg. 2007 Oct;42(10):E17-9.

PMID:
17923183
40.

Inhibitors of the proteasome suppress homologous DNA recombination in mammalian cells.

Murakawa Y, Sonoda E, Barber LJ, Zeng W, Yokomori K, Kimura H, Niimi A, Lehmann A, Zhao GY, Hochegger H, Boulton SJ, Takeda S.

Cancer Res. 2007 Sep 15;67(18):8536-43.

41.

Separation of a disulfide-linked phosphoprotein by diagonal SDS-PAGE with optimized gel crosslinking.

Kuga T, Nakayama Y, Iwamatsu A, Fukumoto Y, Yokomori K, Yamaguchi N.

Anal Biochem. 2007 Nov 15;370(2):252-4. Epub 2007 Jul 31. No abstract available.

PMID:
17716617
42.

Condensin I reveals new insights on mouse meiotic chromosome structure and dynamics.

Viera A, Gómez R, Parra MT, Schmiesing JA, Yokomori K, Rufas JS, Suja JA.

PLoS One. 2007 Aug 22;2(8):e783.

43.

Duplication of the paternal IGF2 allele in trisomy 11 and elevated expression levels of IGF2 mRNA in congenital mesoblastic nephroma of the cellular or mixed type.

Watanabe N, Haruta M, Soejima H, Fukushi D, Yokomori K, Nakadate H, Okita H, Hata JI, Fukuzawa M, Kaneko Y.

Genes Chromosomes Cancer. 2007 Oct;46(10):929-35.

PMID:
17639583
44.

In situ analysis of DNA damage response and repair using laser microirradiation.

Kim JS, Heale JT, Zeng W, Kong X, Krasieva TB, Ball AR Jr, Yokomori K.

Methods Cell Biol. 2007;82:377-407.

PMID:
17586265
45.

The acetyltransferase activity of San stabilizes the mitotic cohesin at the centromeres in a shugoshin-independent manner.

Hou F, Chu CW, Kong X, Yokomori K, Zou H.

J Cell Biol. 2007 May 21;177(4):587-97. Epub 2007 May 14.

46.

Recruitment of DNA damage recognition and repair pathway proteins following near-IR femtosecond laser irradiation of cells.

Gomez-Godinez V, Wakida NM, Dvornikov AS, Yokomori K, Berns MW.

J Biomed Opt. 2007 Mar-Apr;12(2):020505.

PMID:
17477704
47.

RAD18 and poly(ADP-ribose) polymerase independently suppress the access of nonhomologous end joining to double-strand breaks and facilitate homologous recombination-mediated repair.

Saberi A, Hochegger H, Szuts D, Lan L, Yasui A, Sale JE, Taniguchi Y, Murakawa Y, Zeng W, Yokomori K, Helleday T, Teraoka H, Arakawa H, Buerstedde JM, Takeda S.

Mol Cell Biol. 2007 Apr;27(7):2562-71. Epub 2007 Jan 22.

48.

Pyloromyotomy through a sliding umbilical window.

Yokomori K, Oue T, Odajima T, Baba N, Hashimoto D.

J Pediatr Surg. 2006 Dec;41(12):2066-8.

PMID:
17161207
49.

Condensin I interacts with the PARP-1-XRCC1 complex and functions in DNA single-strand break repair.

Heale JT, Ball AR Jr, Schmiesing JA, Kim JS, Kong X, Zhou S, Hudson DF, Earnshaw WC, Yokomori K.

Mol Cell. 2006 Mar 17;21(6):837-48.

50.

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