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Transcriptome analysis and identification of a transcriptional regulatory network in the response to H2O2.

Hieno A, Naznin HA, Inaba-Hasegawa K, Yokogawa T, Hayami N, Nomoto M, Tada Y, Yokogawa T, Higuchi-Takeuchi M, Hanada K, Matsui M, Ikeda Y, Hojo Y, Hirayama T, Kusunoki K, Koyama H, Mitsuda N, Yamamoto YY.

Plant Physiol. 2019 May 7. pii: pp.01426.2018. doi: 10.1104/pp.18.01426. [Epub ahead of print]


Establishing a novel assay system for measuring renin concentration using cost effective recombinant ovine angiotensinogen.

Akther J, Nabi AHMN, Ohno S, Yokogawa T, Nakagawa T, Suzuki F, Ebihara A.

Heliyon. 2019 Apr 4;5(4):e01409. doi: 10.1016/j.heliyon.2019.e01409. eCollection 2019 Apr.


Effects of crushed Schisandra Fruit on the content of lignans in Kampo decoction.

Atsumi T, Yokoyama Y, Yokogawa T, Makino T, Ohtsuka I.

J Nat Med. 2019 Mar;73(2):381-387. doi: 10.1007/s11418-018-1271-1. Epub 2018 Dec 10.


TAS-114, a First-in-Class Dual dUTPase/DPD Inhibitor, Demonstrates Potential to Improve Therapeutic Efficacy of Fluoropyrimidine-Based Chemotherapy.

Yano W, Yokogawa T, Wakasa T, Yamamura K, Fujioka A, Yoshisue K, Matsushima E, Miyahara S, Miyakoshi H, Taguchi J, Chong KT, Takao Y, Fukuoka M, Matsuo K.

Mol Cancer Ther. 2018 Aug;17(8):1683-1693. doi: 10.1158/1535-7163.MCT-17-0911. Epub 2018 May 10.


Pharmacological evaluation for improvement of Kanazawa Sutra, medicinal thread for anal fistula.

Yokogawa T, Sasaki Y, Ando H, Yamamoto K, Mikage M.

J Nat Med. 2017 Apr;71(2):339-348. doi: 10.1007/s11418-016-1059-0. Epub 2016 Nov 29.


Escherichia coli-based production of recombinant ovine angiotensinogen and its characterization as a renin substrate.

Yamashita S, Shibata N, Boku-Ikeda A, Abe E, Inayama A, Yamaguchi T, Higuma A, Inagaki K, Tsuyuzaki T, Iwamoto S, Ohno S, Yokogawa T, Nishikawa K, Biswas KB, Nabi AH, Nakagawa T, Suzuki F, Ebihara A.

BMC Biotechnol. 2016 Apr 7;16:33. doi: 10.1186/s12896-016-0265-x.


Multisite-specific archaeosine tRNA-guanine transglycosylase (ArcTGT) from Thermoplasma acidophilum, a thermo-acidophilic archaeon.

Kawamura T, Hirata A, Ohno S, Nomura Y, Nagano T, Nameki N, Yokogawa T, Hori H.

Nucleic Acids Res. 2016 Feb 29;44(4):1894-908. doi: 10.1093/nar/gkv1522. Epub 2015 Dec 31.


Correlation between the stability of tRNA tertiary structure and the catalytic efficiency of a tRNA-modifying enzyme, archaeal tRNA-guanine transglycosylase.

Nomura Y, Ohno S, Nishikawa K, Yokogawa T.

Genes Cells. 2016 Jan;21(1):41-52. doi: 10.1111/gtc.12317. Epub 2015 Dec 10.


Synthesis of small interfering RNAs containing acetal-type nucleoside analogs at their 3'-ends and analysis of their silencing activity and their ability to bind to the Argonaute2 PAZ domain.

Inada N, Nakamoto K, Yokogawa T, Ueno Y.

Eur J Med Chem. 2015 Oct 20;103:460-72. doi: 10.1016/j.ejmech.2015.09.011. Epub 2015 Sep 10.


Crucial roles of thymidine kinase 1 and deoxyUTPase in incorporating the antineoplastic nucleosides trifluridine and 2'-deoxy-5-fluorouridine into DNA.

Sakamoto K, Yokogawa T, Ueno H, Oguchi K, Kazuno H, Ishida K, Tanaka N, Osada A, Yamada Y, Okabe H, Matsuo K.

Int J Oncol. 2015;46(6):2327-34. doi: 10.3892/ijo.2015.2974. Epub 2015 Apr 20.


Improved solid-phase DNA probe method for tRNA purification: large-scale preparation and alteration of DNA fixation.

Kazayama A, Yamagami R, Yokogawa T, Hori H.

J Biochem. 2015 May;157(5):411-8. doi: 10.1093/jb/mvu089. Epub 2015 Jan 7.


Repeated oral dosing of TAS-102 confers high trifluridine incorporation into DNA and sustained antitumor activity in mouse models.

Tanaka N, Sakamoto K, Okabe H, Fujioka A, Yamamura K, Nakagawa F, Nagase H, Yokogawa T, Oguchi K, Ishida K, Osada A, Kazuno H, Yamada Y, Matsuo K.

Oncol Rep. 2014 Dec;32(6):2319-26. doi: 10.3892/or.2014.3487. Epub 2014 Sep 17.


First-in-human, phase I dose-escalation study of single and multiple doses of a first-in-class enhancer of fluoropyrimidines, a dUTPase inhibitor (TAS-114) in healthy male volunteers.

Saito K, Nagashima H, Noguchi K, Yoshisue K, Yokogawa T, Matsushima E, Tahara T, Takagi S.

Cancer Chemother Pharmacol. 2014 Mar;73(3):577-83. doi: 10.1007/s00280-014-2383-2. Epub 2014 Jan 23.


Intrinsic properties of larval zebrafish neurons in ethanol.

Ikeda H, Delargy AH, Yokogawa T, Urban JM, Burgess HA, Ono F.

PLoS One. 2013 May 3;8(5):e63318. doi: 10.1371/journal.pone.0063318. Print 2013.


Protein fishing using magnetic nanobeads containing calmodulin site-specifically immobilized via an azido group.

Ikeda-Boku A, Kondo K, Ohno S, Yoshida E, Yokogawa T, Hayashi N, Nishikawa K.

J Biochem. 2013 Aug;154(2):159-65. doi: 10.1093/jb/mvt038. Epub 2013 May 7.


A simple system for expression of proteins containing 3-azidotyrosine at a pre-determined site in Escherichia coli.

Ikeda-Boku A, Ohno S, Hibino Y, Yokogawa T, Hayashi N, Nishikawa K.

J Biochem. 2013 Mar;153(3):317-26. doi: 10.1093/jb/mvs153. Epub 2013 Jan 10.


Brain selective transgene expression in zebrafish using an NRSE derived motif.

Bergeron SA, Hannan MC, Codore H, Fero K, Li GH, Moak Z, Yokogawa T, Burgess HA.

Front Neural Circuits. 2012 Dec 28;6:110. doi: 10.3389/fncir.2012.00110. eCollection 2012.


Involvement of plasmin-mediated extracellular activation of progalanin in angiogenesis.

Yamamoto H, Okada R, Iguchi K, Ohno S, Yokogawa T, Nishikawa K, Unno K, Hoshino M, Takeda A.

Biochem Biophys Res Commun. 2013 Jan 18;430(3):999-1004. doi: 10.1016/j.bbrc.2012.11.124. Epub 2012 Dec 19.


Purification and comparison of native and recombinant tRNA-guanine transglycosylases from Methanosarcina acetivorans.

Nomura Y, Onda Y, Ohno S, Taniguchi H, Ando K, Oka N, Nishikawa K, Yokogawa T.

Protein Expr Purif. 2013 Mar;88(1):13-9. doi: 10.1016/j.pep.2012.11.009. Epub 2012 Nov 29.


The dorsal raphe modulates sensory responsiveness during arousal in zebrafish.

Yokogawa T, Hannan MC, Burgess HA.

J Neurosci. 2012 Oct 24;32(43):15205-15. doi: 10.1523/JNEUROSCI.1019-12.2012.


[Qualitative research of contexts of occupational physician's advice].

Fujino Y, Takahashi N, Yokogawa T, Kayashima K, Tateishi S, Abe H, Okubo Y, Mori K.

Sangyo Eiseigaku Zasshi. 2012;54(6):267-75. Epub 2012 Sep 21. Japanese.


[A review of assessment of fitness for work and adjustments for health and safety at worksites overseas].

Yokogawa T, Sasaki N, Hiraoka K, Tateishi S, Tsutsumi A, Mori K.

Sangyo Eiseigaku Zasshi. 2012;54(5):163-73. Epub 2012 Aug 9. Review. Japanese.


1,2,3-Triazole-containing uracil derivatives with excellent pharmacokinetics as a novel class of potent human deoxyuridine triphosphatase inhibitors.

Miyakoshi H, Miyahara S, Yokogawa T, Endoh K, Muto T, Yano W, Wakasa T, Ueno H, Chong KT, Taguchi J, Nomura M, Takao Y, Fujioka A, Hashimoto A, Itou K, Yamamura K, Shuto S, Nagasawa H, Fukuoka M.

J Med Chem. 2012 Jul 26;55(14):6427-37. doi: 10.1021/jm3004174. Epub 2012 Jul 3.


Site-specific attachment of a protein to a carbon nanotube end without loss of protein function.

Yoshimura SH, Khan S, Ohno S, Yokogawa T, Nishikawa K, Hosoya T, Maruyama H, Nakayama Y, Takeyasu K.

Bioconjug Chem. 2012 Jul 18;23(7):1488-93. doi: 10.1021/bc300131w. Epub 2012 Jul 2.


Discovery of highly potent human deoxyuridine triphosphatase inhibitors based on the conformation restriction strategy.

Miyahara S, Miyakoshi H, Yokogawa T, Chong KT, Taguchi J, Muto T, Endoh K, Yano W, Wakasa T, Ueno H, Takao Y, Fujioka A, Hashimoto A, Itou K, Yamamura K, Nomura M, Nagasawa H, Shuto S, Fukuoka M.

J Med Chem. 2012 Jun 14;55(11):5483-96. doi: 10.1021/jm300416h. Epub 2012 May 30.


Synthesis and discovery of N-carbonylpyrrolidine- or N-sulfonylpyrrolidine-containing uracil derivatives as potent human deoxyuridine triphosphatase inhibitors.

Miyakoshi H, Miyahara S, Yokogawa T, Chong KT, Taguchi J, Endoh K, Yano W, Wakasa T, Ueno H, Takao Y, Nomura M, Shuto S, Nagasawa H, Fukuoka M.

J Med Chem. 2012 Apr 12;55(7):2960-9. doi: 10.1021/jm201627n. Epub 2012 Mar 26.


Discovery of a novel class of potent human deoxyuridine triphosphatase inhibitors remarkably enhancing the antitumor activity of thymidylate synthase inhibitors.

Miyahara S, Miyakoshi H, Yokogawa T, Chong KT, Taguchi J, Muto T, Endoh K, Yano W, Wakasa T, Ueno H, Takao Y, Fujioka A, Hashimoto A, Itou K, Yamamura K, Nomura M, Nagasawa H, Shuto S, Fukuoka M.

J Med Chem. 2012 Apr 12;55(7):2970-80. doi: 10.1021/jm201628y. Epub 2012 Mar 26.


Suboptimal radiation protection for municipal employees operating in the Fukushima designated zone.

Yokogawa T, Takahashi K, Nagata T, Mori K, Horie S.

Occup Environ Med. 2012 Jun;69(6):453-4. doi: 10.1136/oemed-2011-100436. Epub 2011 Nov 22. No abstract available.


Activation of large form galanin-LI by extracellular processing in small cell lung carcinoma tissue.

Yamamoto H, Iguchi K, Ohno S, Yokogawa T, Nishikawa K, Hoshino M.

Protein Pept Lett. 2011 Oct;18(10):1058-64.


Circadian and homeostatic regulation of structural synaptic plasticity in hypocretin neurons.

Appelbaum L, Wang G, Yokogawa T, Skariah GM, Smith SJ, Mourrain P, Mignot E.

Neuron. 2010 Oct 6;68(1):87-98. doi: 10.1016/j.neuron.2010.09.006.


A model of Costeff Syndrome reveals metabolic and protective functions of mitochondrial OPA3.

Pei W, Kratz LE, Bernardini I, Sood R, Yokogawa T, Dorward H, Ciccone C, Kelley RI, Anikster Y, Burgess HA, Huizing M, Feldman B.

Development. 2010 Aug 1;137(15):2587-96. doi: 10.1242/dev.043745.


Incorporation of 3-azidotyrosine into proteins through engineering yeast tyrosyl-tRNA synthetase and its application to site-selective protein modification.

Yokogawa T, Ohno S, Nishikawa K.

Methods Mol Biol. 2010;607:227-42. doi: 10.1007/978-1-60327-331-2_19.


Functional replacement of the endogenous tyrosyl-tRNA synthetase-tRNATyr pair by the archaeal tyrosine pair in Escherichia coli for genetic code expansion.

Iraha F, Oki K, Kobayashi T, Ohno S, Yokogawa T, Nishikawa K, Yokoyama S, Sakamoto K.

Nucleic Acids Res. 2010 Jun;38(11):3682-91. doi: 10.1093/nar/gkq080. Epub 2010 Feb 16.


Agmatine-conjugated cytidine in a tRNA anticodon is essential for AUA decoding in archaea.

Ikeuchi Y, Kimura S, Numata T, Nakamura D, Yokogawa T, Ogata T, Wada T, Suzuki T, Suzuki T.

Nat Chem Biol. 2010 Apr;6(4):277-82. doi: 10.1038/nchembio.323. Epub 2010 Feb 7.


Optimization of the hybridization-based method for purification of thermostable tRNAs in the presence of tetraalkylammonium salts.

Yokogawa T, Kitamura Y, Nakamura D, Ohno S, Nishikawa K.

Nucleic Acids Res. 2010 Apr;38(6):e89. doi: 10.1093/nar/gkp1182. Epub 2009 Dec 29.


Sleep-wake regulation and hypocretin-melatonin interaction in zebrafish.

Appelbaum L, Wang GX, Maro GS, Mori R, Tovin A, Marin W, Yokogawa T, Kawakami K, Smith SJ, Gothilf Y, Mignot E, Mourrain P.

Proc Natl Acad Sci U S A. 2009 Dec 22;106(51):21942-7. doi: 10.1073/pnas.906637106. Epub 2009 Dec 4.


N7-Methylguanine at position 46 (m7G46) in tRNA from Thermus thermophilus is required for cell viability at high temperatures through a tRNA modification network.

Tomikawa C, Yokogawa T, Kanai T, Hori H.

Nucleic Acids Res. 2010 Jan;38(3):942-57. doi: 10.1093/nar/gkp1059. Epub 2009 Nov 24.


Detection of enzymatic activities related to the tRNA splicing pathway in Methanosarcina acetivorans cell extract.

Nomura Y, Yokogawa T, Yoshinari S, Watanabe Y, Ohno S, Nishikawa K.

Nucleic Acids Symp Ser (Oxf). 2009;(53):299-300. doi: 10.1093/nass/nrp150.


Preparation of an ochre suppressor tRNA recognizing exclusively UAA codon by using the molecular surgery technique.

Yokogawa T, Hassan HM, Yokota Y, Ohno S, Nishikawa K.

Nucleic Acids Symp Ser (Oxf). 2009;(53):295-6. doi: 10.1093/nass/nrp148.


Generality of a power-law long-term correlation in beat timings of single cardiac cells.

Yokogawa T, Harada T.

Biochem Biophys Res Commun. 2009 Sep 11;387(1):19-24. doi: 10.1016/j.bbrc.2009.05.143. Epub 2009 Jun 6.


Aquifex aeolicus tRNA (N2,N2-guanine)-dimethyltransferase (Trm1) catalyzes transfer of methyl groups not only to guanine 26 but also to guanine 27 in tRNA.

Awai T, Kimura S, Tomikawa C, Ochi A, Ihsanawati, Bessho Y, Yokoyama S, Ohno S, Nishikawa K, Yokogawa T, Suzuki T, Hori H.

J Biol Chem. 2009 Jul 31;284(31):20467-78. doi: 10.1074/jbc.M109.020024. Epub 2009 Jun 2.


Expression of functional leukotriene B4 receptors on human airway smooth muscle cells.

Watanabe S, Yamasaki A, Hashimoto K, Shigeoka Y, Chikumi H, Hasegawa Y, Sumikawa T, Takata M, Okazaki R, Watanabe M, Yokogawa T, Yamamura M, Hayabuchi T, Gerthoffer WT, Halayko AJ, Shimizu E.

J Allergy Clin Immunol. 2009 Jul;124(1):59-65.e1-3. doi: 10.1016/j.jaci.2009.03.024. Epub 2009 May 27.


Unconventional decoding of the AUA codon as methionine by mitochondrial tRNAMet with the anticodon f5CAU as revealed with a mitochondrial in vitro translation system.

Takemoto C, Spremulli LL, Benkowski LA, Ueda T, Yokogawa T, Watanabe K.

Nucleic Acids Res. 2009 Apr;37(5):1616-27. doi: 10.1093/nar/gkp001. Epub 2009 Jan 16.


Singular behavior of slow dynamics of single excitable cells.

Harada T, Yokogawa T, Miyaguchi T, Kori H.

Biophys J. 2009 Jan;96(1):255-67. doi: 10.1529/biophysj.108.139691.


Role of RNase L in apoptosis induced by 1-(3-C-ethynyl-beta-D-ribo-pentofuranosyl)cytosine.

Naito T, Yokogawa T, Takatori S, Goda K, Hiramoto A, Sato A, Kitade Y, Sasaki T, Matsuda A, Fukushima M, Wataya Y, Kim HS.

Cancer Chemother Pharmacol. 2009 Apr;63(5):837-50. doi: 10.1007/s00280-008-0810-y. Epub 2008 Jul 31.


A novel apoptotic pathway of 3'-Ethynylcytidine(ECyd) involving the inhibition of RNA synthesis--the possibility of RNase L activated pathway as a target of ECyd.

Naito T, Yokogawa T, Kim HS, Matsuda A, Sasaki T, Fukushima M, Kitade Y, Wataya Y.

Nucleic Acids Symp Ser (Oxf). 2007;(51):435-6.


Characterization of sleep in zebrafish and insomnia in hypocretin receptor mutants.

Yokogawa T, Marin W, Faraco J, P├ęzeron G, Appelbaum L, Zhang J, Rosa F, Mourrain P, Mignot E.

PLoS Biol. 2007 Oct 16;5(10):e277.


Structural basis for recognition of cognate tRNA by tyrosyl-tRNA synthetase from three kingdoms.

Tsunoda M, Kusakabe Y, Tanaka N, Ohno S, Nakamura M, Senda T, Moriguchi T, Asai N, Sekine M, Yokogawa T, Nishikawa K, Nakamura KT.

Nucleic Acids Res. 2007;35(13):4289-300. Epub 2007 Jun 18.


Molecular determinants of substrate recognition in thermostable alpha-glucosidases belonging to glycoside hydrolase family 13.

Tsujimoto Y, Tanaka H, Takemura R, Yokogawa T, Shimonaka A, Matsui H, Kashiwabara S, Watanabe K, Suzuki Y.

J Biochem. 2007 Jul;142(1):87-93. Epub 2007 May 24. Erratum in: J Biochem. 2007 Nov;142(5):663.


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