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Items: 1 to 50 of 86

1.

Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB).

Adams PD, Afonine PV, Baskaran K, Berman HM, Berrisford J, Bricogne G, Brown DG, Burley SK, Chen M, Feng Z, Flensburg C, Gutmanas A, Hoch JC, Ikegawa Y, Kengaku Y, Krissinel E, Kurisu G, Liang Y, Liebschner D, Mak L, Markley JL, Moriarty NW, Murshudov GN, Noble M, Peisach E, Persikova I, Poon BK, Sobolev OV, Ulrich EL, Velankar S, Vonrhein C, Westbrook J, Wojdyr M, Yokochi M, Young JY.

Acta Crystallogr D Struct Biol. 2019 Apr 1;75(Pt 4):451-454. doi: 10.1107/S2059798319004522. Epub 2019 Apr 8. No abstract available.

PMID:
30988261
2.

nmrML: A Community Supported Open Data Standard for the Description, Storage, and Exchange of NMR Data.

Schober D, Jacob D, Wilson M, Cruz JA, Marcu A, Grant JR, Moing A, Deborde C, de Figueiredo LF, Haug K, Rocca-Serra P, Easton J, Ebbels TMD, Hao J, Ludwig C, Günther UL, Rosato A, Klein MS, Lewis IA, Luchinat C, Jones AR, Grauslys A, Larralde M, Yokochi M, Kobayashi N, Porzel A, Griffin JL, Viant MR, Wishart DS, Steinbeck C, Salek RM, Neumann S.

Anal Chem. 2018 Jan 2;90(1):649-656. doi: 10.1021/acs.analchem.7b02795. Epub 2017 Dec 14.

3.

New tools and functions in data-out activities at Protein Data Bank Japan (PDBj).

Kinjo AR, Bekker GJ, Wako H, Endo S, Tsuchiya Y, Sato H, Nishi H, Kinoshita K, Suzuki H, Kawabata T, Yokochi M, Iwata T, Kobayashi N, Fujiwara T, Kurisu G, Nakamura H.

Protein Sci. 2018 Jan;27(1):95-102. doi: 10.1002/pro.3273. Epub 2017 Sep 18.

4.

Publication of nuclear magnetic resonance experimental data with semantic web technology and the application thereof to biomedical research of proteins.

Yokochi M, Kobayashi N, Ulrich EL, Kinjo AR, Iwata T, Ioannidis YE, Livny M, Markley JL, Nakamura H, Kojima C, Fujiwara T.

J Biomed Semantics. 2016 May 5;7(1):16.

5.

Ligand-driven conformational changes of MurD visualized by paramagnetic NMR.

Saio T, Ogura K, Kumeta H, Kobashigawa Y, Shimizu K, Yokochi M, Kodama K, Yamaguchi H, Tsujishita H, Inagaki F.

Sci Rep. 2015 Nov 19;5:16685. doi: 10.1038/srep16685.

6.

Spontaneous movements in the supine position of preterm infants with intellectual disability.

Kouwaki M, Yokochi M, Kamiya T, Yokochi K.

Brain Dev. 2014 Aug;36(7):572-7. doi: 10.1016/j.braindev.2013.08.003. Epub 2013 Sep 19.

PMID:
24055340
7.

Investigation of endogenous compounds for assessing the drug interactions in the urinary excretion involving multidrug and toxin extrusion proteins.

Kato K, Mori H, Kito T, Yokochi M, Ito S, Inoue K, Yonezawa A, Katsura T, Kumagai Y, Yuasa H, Moriyama Y, Inui K, Kusuhara H, Sugiyama Y.

Pharm Res. 2014 Jan;31(1):136-47. doi: 10.1007/s11095-013-1144-y. Epub 2013 Aug 2.

PMID:
23907530
8.

Effect of coadministration of single and multiple doses of rifampicin on the pharmacokinetics of fexofenadine enantiomers in healthy subjects.

Kusuhara H, Miura M, Yasui-Furukori N, Yoshida K, Akamine Y, Yokochi M, Fukizawa S, Ikejiri K, Kanamitsu K, Uno T, Sugiyama Y.

Drug Metab Dispos. 2013 Jan;41(1):206-13. doi: 10.1124/dmd.112.048330. Epub 2012 Oct 31.

PMID:
23115085
9.

Inverse pattern of photoreceptor abnormalities in retinitis pigmentosa and cone-rod dystrophy.

Yokochi M, Li D, Horiguchi M, Kishi S.

Doc Ophthalmol. 2012 Dec;125(3):211-8. doi: 10.1007/s10633-012-9348-8. Epub 2012 Aug 5.

10.

Analyses of the MAPT, PGRN, and C9orf72 mutations in Japanese patients with FTLD, PSP, and CBS.

Ogaki K, Li Y, Takanashi M, Ishikawa K, Kobayashi T, Nonaka T, Hasegawa M, Kishi M, Yoshino H, Funayama M, Tsukamoto T, Shioya K, Yokochi M, Imai H, Sasaki R, Kokubo Y, Kuzuhara S, Motoi Y, Tomiyama H, Hattori N.

Parkinsonism Relat Disord. 2013 Jan;19(1):15-20. doi: 10.1016/j.parkreldis.2012.06.019. Epub 2012 Jul 18.

PMID:
22818528
11.

Spontaneous movements in the supine position of healthy term infants and preterm infants with or without periventricular leukomalacia.

Kouwaki M, Yokochi M, Togawa Y, Kamiya T, Yokochi K.

Brain Dev. 2013 Apr;35(4):340-8. doi: 10.1016/j.braindev.2012.05.005. Epub 2012 May 31.

PMID:
22656321
12.

Convenient method for resolving degeneracies due to symmetry of the magnetic susceptibility tensor and its application to pseudo contact shift-based protein-protein complex structure determination.

Kobashigawa Y, Saio T, Ushio M, Sekiguchi M, Yokochi M, Ogura K, Inagaki F.

J Biomol NMR. 2012 May;53(1):53-63. doi: 10.1007/s10858-012-9623-8. Epub 2012 Apr 10.

13.

Effects of physical exercise prescribed by a medical support team on elderly lower extremity osteoarthritis combined with metabolic syndrome and/or type 2 diabetes.

Yokochi M, Watanabe T, Ida K, Yoshida K, Sato Y.

Geriatr Gerontol Int. 2012 Jul;12(3):446-53. doi: 10.1111/j.1447-0594.2011.00790.x. Epub 2011 Dec 28.

PMID:
22212712
14.

Competitive inhibition of the luminal efflux by multidrug and toxin extrusions, but not basolateral uptake by organic cation transporter 2, is the likely mechanism underlying the pharmacokinetic drug-drug interactions caused by cimetidine in the kidney.

Ito S, Kusuhara H, Yokochi M, Toyoshima J, Inoue K, Yuasa H, Sugiyama Y.

J Pharmacol Exp Ther. 2012 Feb;340(2):393-403. doi: 10.1124/jpet.111.184986. Epub 2011 Nov 9.

PMID:
22072731
15.

An NMR strategy for fragment-based ligand screening utilizing a paramagnetic lanthanide probe.

Saio T, Ogura K, Shimizu K, Yokochi M, Burke TR Jr, Inagaki F.

J Biomol NMR. 2011 Nov;51(3):395-408. doi: 10.1007/s10858-011-9566-5. Epub 2011 Sep 17.

16.

An evaluation tool for FKBP12-dependent and -independent mTOR inhibitors using a combination of FKBP-mTOR fusion protein, DSC and NMR.

Sekiguchi M, Kobashigawa Y, Kawasaki M, Yokochi M, Kiso T, Suzumura K, Mori K, Teramura T, Inagaki F.

Protein Eng Des Sel. 2011 Nov;24(11):811-7. doi: 10.1093/protein/gzr045. Epub 2011 Sep 6.

17.

[A 84-year-old man with apraxia and parkinsonism on his left side,who became bedridden for 6 years].

Takanashi M, Funabe S, Murayama S, Yokochi M.

Brain Nerve. 2011 Aug;63(8):901-8, 909-11. Japanese. No abstract available.

PMID:
21882493
18.

PCS-based structure determination of protein-protein complexes.

Saio T, Yokochi M, Kumeta H, Inagaki F.

J Biomol NMR. 2010 Apr;46(4):271-80. doi: 10.1007/s10858-010-9401-4. Epub 2010 Mar 19.

19.

The NMR structure of the p62 PB1 domain, a key protein in autophagy and NF-kappaB signaling pathway.

Saio T, Yokochi M, Inagaki F.

J Biomol NMR. 2009 Nov;45(3):335-41. doi: 10.1007/s10858-009-9370-7. No abstract available.

PMID:
19728111
20.

Two-point anchoring of a lanthanide-binding peptide to a target protein enhances the paramagnetic anisotropic effect.

Saio T, Ogura K, Yokochi M, Kobashigawa Y, Inagaki F.

J Biomol NMR. 2009 Jul;44(3):157-66. doi: 10.1007/s10858-009-9325-z. Epub 2009 May 26.

PMID:
19468839
21.

Reevaluation of levodopa therapy for the treatment of advanced Parkinson's disease.

Yokochi M.

Parkinsonism Relat Disord. 2009 Jan;15 Suppl 1:S25-30. doi: 10.1016/S1353-8020(09)70008-2. Review.

PMID:
19131038
22.

Solution structure of the Grb2 SH2 domain complexed with a high-affinity inhibitor.

Ogura K, Shiga T, Yokochi M, Yuzawa S, Burke TR Jr, Inagaki F.

J Biomol NMR. 2008 Nov;42(3):197-207. doi: 10.1007/s10858-008-9272-0. Epub 2008 Oct 2.

23.

[Intravenous thrombolytic therapy and its unresolved problems in Japan].

Nagao T, Katayama Y, Yokochi M.

Rinsho Shinkeigaku. 2007 Nov;47(11):926-8. Japanese.

PMID:
18210837
24.

Upper cervical spine movement during intubation: fluoroscopic comparison of the AirWay Scope, McCoy laryngoscope, and Macintosh laryngoscope.

Maruyama K, Yamada T, Kawakami R, Kamata T, Yokochi M, Hara K.

Br J Anaesth. 2008 Jan;100(1):120-4.

25.

[Mesolimbic and mesocortical pathways in Parkinson disease].

Yokochi M.

Brain Nerve. 2007 Sep;59(9):943-51. Review. Japanese.

PMID:
17886476
26.

The cooperative role of OsCnfU-1A domain I and domain II in the iron sulphur cluster transfer process as revealed by NMR.

Saio T, Kumeta H, Ogura K, Yokochi M, Asayama M, Katoh S, Katoh E, Teshima K, Inagaki F.

J Biochem. 2007 Jul;142(1):113-21. Epub 2007 Jun 1.

PMID:
17545250
27.

Structural basis for the transforming activity of human cancer-related signaling adaptor protein CRK.

Kobashigawa Y, Sakai M, Naito M, Yokochi M, Kumeta H, Makino Y, Ogura K, Tanaka S, Inagaki F.

Nat Struct Mol Biol. 2007 Jun;14(6):503-10. Epub 2007 May 21.

PMID:
17515907
28.

Relatively spared mesocorticolimbic dopaminergic system in juvenile parkinsonism.

Yoshimura N, Yokochi M, Kan Y, Koyama S, Kawamura M.

Parkinsonism Relat Disord. 2007 Dec;13(8):483-8. Epub 2007 Apr 19.

PMID:
17448721
29.

[Electroconvulsive therapy for neurological disorders].

Doi N, Sameshima T, Suwa H, Mera H, Nagao T, Yokochi M, Nakamura M, Isse K.

Brain Nerve. 2007 Apr;59(4):313-20. Review. Japanese.

PMID:
17447517
30.

Cerebral arteriopathy with extracranial artery involvement in a patient with ulcerative colitis.

Nomoto T, Nagao T, Hirabayashi K, Seta T, Yokochi M, Katsura K, Katayama Y.

J Neurol Sci. 2006 Apr 15;243(1-2):87-9. Epub 2005 Dec 20.

PMID:
16364366
31.

Factors influencing outcome in Guillain-Barré Syndrome: comparison of plasma adsorption against other treatments.

Seta T, Nagayama H, Katsura K, Hamamoto M, Araki T, Yokochi M, Utsumi K, Katayama Y.

Clin Neurol Neurosurg. 2005 Oct;107(6):491-6.

PMID:
16202823
32.

1H, 13C and 15N resonance assignments of the backbone and methyl groups of the 24 kDa tetratricopeptide repeat domain in p67(phox).

Yoshida S, Ogura K, Yokochi M, Yuzawa S, Horiuchi M, Morioka H, Sumimoto H, Inagaki F.

J Biomol NMR. 2005 Jun;32(2):176. No abstract available.

PMID:
16034671
33.

Preserved cardiac sympathetic nerve accounts for normal cardiac uptake of MIBG in PARK2.

Orimo S, Amino T, Yokochi M, Kojo T, Uchihara T, Takahashi A, Wakabayashi K, Takahashi H, Hattori N, Mizuno Y.

Mov Disord. 2005 Oct;20(10):1350-3.

PMID:
16001409
34.

[A case of 51-year-old woman demonstrating akinetic mutism with seven years course of Parkinsonism].

Hashida H, Kuroiwa T, Fukuda T, Inoue K, Yokochi M, Kawamura M, Takagi M, Orimo S, Fujigasaki J.

No To Shinkei. 2005 May;57(5):425-39. Japanese. No abstract available.

PMID:
15981643
35.

A long-term follow-up study of radiographically evident degenerative changes in the temporomandibular joint with different conditions of disk displacement.

Kurita H, Uehara S, Yokochi M, Nakatsuka A, Kobayashi H, Kurashina K.

Int J Oral Maxillofac Surg. 2006 Jan;35(1):49-54. Epub 2005 Jun 14.

PMID:
15961278
36.

[A case of 53-years-old woman with the onset of subacute right-sided numbness, and presented with various lesions on MRI].

Mizoi Y, Ida M, Takao M, Koto A, Orimo S, Inoue K, Yokochi M, Kawamura M, Takagi M, Fukuda T, Fujigasaki J.

No To Shinkei. 2005 Apr;57(4):333-48. Japanese. No abstract available.

PMID:
15948406
37.

[A case of 62-year-old man with tumor-like lesion in the brain, presenting with fever and transient consciousness disturbance].

Amino T, Kanazawa T, Orimo S, Tanaka H, Oka T, Mori S, Takagi M, Inoue K, Yokochi M, Kawamura M, Fukuda T, Fujigasaki J.

No To Shinkei. 2004 Jul;56(7):617-30. Japanese. No abstract available.

PMID:
15379293
38.

[An autopsy case of 54-year-old man with progressive dementia].

Ishihara K, Ikeda K, Inoue K, Yokochi M, Kawamura M, Takagi M, Orimo S, Fukuda T, Fujigasaki J.

No To Shinkei. 2004 May;56(5):439-50. Japanese. No abstract available.

PMID:
15279205
39.

Sequence-specific resonance assignments of the tandem SH3 domains in an autoinhibitory form of p47(phox).

Yuzawa S, Yokochi M, Fujioka Y, Ogura K, Sumimoto H, Inagaki F.

J Biomol NMR. 2004 Jul;29(3):451-2. No abstract available.

PMID:
15213464
40.

Solution structure of atypical protein kinase C PB1 domain and its mode of interaction with ZIP/p62 and MEK5.

Hirano Y, Yoshinaga S, Ogura K, Yokochi M, Noda Y, Sumimoto H, Inagaki F.

J Biol Chem. 2004 Jul 23;279(30):31883-90. Epub 2004 May 13.

41.

[An autopsy case of 40-year-old male with encephalitis demonstrated lesions of the cerebral cortex on MRI and presenting symptoms such as delusion and hallucination. Clinical conference].

Yoshioka M, Fujigasaki J, Ohama E, Ida M, Inoue K, Yokochi M, Kawamura M, Takagi M, Orimo S.

No To Shinkei. 2003 Dec;55(12):1087-98. Japanese. No abstract available.

PMID:
14870580
42.

[A case of fluent aphasia representing severe left temporal lobe atrophy. Clinical conference].

Nagao T, Funata N, Takahashi M, Mori H, Kawamura M, Inoue K, Yokochi M, Takagi M, Orimo S, Fujigasaki J.

No To Shinkei. 2003 Dec;55(12):1073-85. Japanese. No abstract available.

PMID:
14870579
43.

The PB1 domain and the PC motif-containing region are structurally similar protein binding modules.

Yoshinaga S, Kohjima M, Ogura K, Yokochi M, Takeya R, Ito T, Sumimoto H, Inagaki F.

EMBO J. 2003 Oct 1;22(19):4888-97.

45.

Comparison of phaeomelanin and its precursor 5-S-cysteinyldopa in the serum of melanoma patients.

Wakamatsu K, Yokochi M, Naito A, Kageshita T, Ito S.

Melanoma Res. 2003 Aug;13(4):357-63.

PMID:
12883361
46.

Sympathetic cardiac denervation in Parkinson's disease and pure autonomic failure but not in multiple system atrophy.

Orimo S, Oka T, Miura H, Tsuchiya K, Mori F, Wakabayashi K, Nagao T, Yokochi M.

J Neurol Neurosurg Psychiatry. 2002 Dec;73(6):776-7. No abstract available.

47.

Polymorphism of the lipoprotein lipase gene and risk of atherothrombotic cerebral infarction in the Japanese.

Shimo-Nakanishi Y, Urabe T, Hattori N, Watanabe Y, Nagao T, Yokochi M, Hamamoto M, Mizuno Y.

Stroke. 2001 Jul;32(7):1481-6.

PMID:
11441189
48.

Solution structure of Grb2 reveals extensive flexibility necessary for target recognition.

Yuzawa S, Yokochi M, Hatanaka H, Ogura K, Kataoka M, Miura K, Mandiyan V, Schlessinger J, Inagaki F.

J Mol Biol. 2001 Feb 23;306(3):527-37.

PMID:
11178911
49.

PARKIN as a pathogenic gene for autosomal recessive juvenile parkinsonism.

Shimizu N, Asakawa S, Minoshima S, Kitada T, Hattori N, Matsumine H, Yokochi M, Yamamura Y, Mizuno Y.

J Neural Transm Suppl. 2000;(58):19-30. Review.

PMID:
11128608
50.

Development of the nosological analysis of juvenile parkinsonism.

Yokochi M.

Brain Dev. 2000 Sep;22 Suppl 1:S81-6. Review.

PMID:
10984665

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