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Items: 11

1.

SampPick: Selection of a Cohort of Subjects Matching a Population HLA Distribution.

McGill JR, Yogurtcu ON, Verthelyi D, Yang H, Sauna ZE.

Front Immunol. 2019 Dec 20;10:2894. doi: 10.3389/fimmu.2019.02894. eCollection 2019.

2.

An implicit lipid model for efficient reaction-diffusion simulations of protein binding to surfaces of arbitrary topology.

Fu Y, Yogurtcu ON, Kothari R, Thorkelsdottir G, Sodt AJ, Johnson ME.

J Chem Phys. 2019 Sep 28;151(12):124115. doi: 10.1063/1.5120516.

PMID:
31575182
3.

TCPro: an In Silico Risk Assessment Tool for Biotherapeutic Protein Immunogenicity.

Yogurtcu ON, Sauna ZE, McGill JR, Tegenge MA, Yang H.

AAPS J. 2019 Aug 2;21(5):96. doi: 10.1208/s12248-019-0368-0.

PMID:
31376048
4.

Predictive model for Zika virus RNA minipool nucleic acid testing in outbreak scenarios.

Yogurtcu ON, Yang H, Chancey C, Forshee RA, Eder AF.

Transfusion. 2019 Jul;59(7):2211-2217. doi: 10.1111/trf.15296. Epub 2019 Apr 2.

PMID:
30938839
5.

Cytosolic proteins can exploit membrane localization to trigger functional assembly.

Yogurtcu ON, Johnson ME.

PLoS Comput Biol. 2018 Mar 5;14(3):e1006031. doi: 10.1371/journal.pcbi.1006031. eCollection 2018 Mar.

6.

Collective cancer cell invasion induced by coordinated contractile stresses.

Jimenez Valencia AM, Wu PH, Yogurtcu ON, Rao P, DiGiacomo J, Godet I, He L, Lee MH, Gilkes D, Sun SX, Wirtz D.

Oncotarget. 2015 Dec 22;6(41):43438-51. doi: 10.18632/oncotarget.5874.

7.

Theory of bi-molecular association dynamics in 2D for accurate model and experimental parameterization of binding rates.

Yogurtcu ON, Johnson ME.

J Chem Phys. 2015 Aug 28;143(8):084117. doi: 10.1063/1.4929390.

8.

A mechanochemical model of actin filaments.

Yogurtcu ON, Kim JS, Sun SX.

Biophys J. 2012 Aug 22;103(4):719-27. doi: 10.1016/j.bpj.2012.07.020. Erratum in: Biophys J. 2013 Feb 5;104(3):737-8.

9.

Mechanical response and conformational amplification in α-helical coiled coils.

Yogurtcu ON, Wolgemuth CW, Sun SX.

Biophys J. 2010 Dec 15;99(12):3895-904. doi: 10.1016/j.bpj.2010.10.002.

10.

Statistical thermodynamics of residue fluctuations in native proteins.

Yogurtcu ON, Gur M, Erman B.

J Chem Phys. 2009 Mar 7;130(9):095103. doi: 10.1063/1.3078517.

PMID:
19275429
11.

Restricted mobility of conserved residues in protein-protein interfaces in molecular simulations.

Yogurtcu ON, Erdemli SB, Nussinov R, Turkay M, Keskin O.

Biophys J. 2008 May 1;94(9):3475-85. doi: 10.1529/biophysj.107.114835. Epub 2008 Jan 28.

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