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Effect of antimicrobial nanocomposites on Vibrio cholerae lifestyles: Pellicle biofilm, planktonic and surface-attached biofilm.

Meza-Villezcas A, Gallego-Hernández AL, Yildiz FH, Jaime-Acuña OE, Raymond-Herrera O, Huerta-Saquero A.

PLoS One. 2019 Jun 12;14(6):e0217869. doi: 10.1371/journal.pone.0217869. eCollection 2019.


Functional Specialization in Vibrio cholerae Diguanylate Cyclases: Distinct Modes of Motility Suppression and c-di-GMP Production.

Zamorano-Sánchez D, Xian W, Lee CK, Salinas M, Thongsomboon W, Cegelski L, Wong GCL, Yildiz FH.

MBio. 2019 Apr 23;10(2). pii: e00670-19. doi: 10.1128/mBio.00670-19.


NtrC Adds a New Node to the Complex Regulatory Network of Biofilm Formation and vps Expression in Vibrio cholerae.

Cheng AT, Zamorano-Sánchez D, Teschler JK, Wu D, Yildiz FH.

J Bacteriol. 2018 Jul 10;200(15). pii: e00025-18. doi: 10.1128/JB.00025-18. Print 2018 Aug 1.


Synchronous termination of replication of the two chromosomes is an evolutionary selected feature in Vibrionaceae.

Kemter FS, Messerschmidt SJ, Schallopp N, Sobetzko P, Lang E, Bunk B, Spröer C, Teschler JK, Yildiz FH, Overmann J, Waldminghaus T.

PLoS Genet. 2018 Mar 5;14(3):e1007251. doi: 10.1371/journal.pgen.1007251. eCollection 2018 Mar.


Structural dynamics of RbmA governs plasticity of Vibrio cholerae biofilms.

Fong JC, Rogers A, Michael AK, Parsley NC, Cornell WC, Lin YC, Singh PK, Hartmann R, Drescher K, Vinogradov E, Dietrich LE, Partch CL, Yildiz FH.

Elife. 2017 Aug 1;6. pii: e26163. doi: 10.7554/eLife.26163.


The Two-Component Signal Transduction System VxrAB Positively Regulates Vibrio cholerae Biofilm Formation.

Teschler JK, Cheng AT, Yildiz FH.

J Bacteriol. 2017 Aug 22;199(18). pii: e00139-17. doi: 10.1128/JB.00139-17. Print 2017 Sep 15.


The ins and outs of cyclic di-GMP signaling in Vibrio cholerae.

Conner JG, Zamorano-Sánchez D, Park JH, Sondermann H, Yildiz FH.

Curr Opin Microbiol. 2017 Apr;36:20-29. doi: 10.1016/j.mib.2017.01.002. Epub 2017 Feb 5. Review.


Rules of Engagement: The Type VI Secretion System in Vibrio cholerae.

Joshi A, Kostiuk B, Rogers A, Teschler J, Pukatzki S, Yildiz FH.

Trends Microbiol. 2017 Apr;25(4):267-279. doi: 10.1016/j.tim.2016.12.003. Epub 2016 Dec 24. Review.


Nucleotide binding by the widespread high-affinity cyclic di-GMP receptor MshEN domain.

Wang YC, Chin KH, Tu ZL, He J, Jones CJ, Sanchez DZ, Yildiz FH, Galperin MY, Chou SH.

Nat Commun. 2016 Aug 31;7:12481. doi: 10.1038/ncomms12481.


Phenotypic Analysis Reveals that the 2010 Haiti Cholera Epidemic Is Linked to a Hypervirulent Strain.

Satchell KJ, Jones CJ, Wong J, Queen J, Agarwal S, Yildiz FH.

Infect Immun. 2016 Aug 19;84(9):2473-81. doi: 10.1128/IAI.00189-16. Print 2016 Sep.


Staying Alive: Vibrio cholerae's Cycle of Environmental Survival, Transmission, and Dissemination.

Conner JG, Teschler JK, Jones CJ, Yildiz FH.

Microbiol Spectr. 2016 Apr;4(2). doi: 10.1128/microbiolspec.VMBF-0015-2015. Review.


Response of Vibrio cholerae to Low-Temperature Shifts: CspV Regulation of Type VI Secretion, Biofilm Formation, and Association with Zooplankton.

Townsley L, Sison Mangus MP, Mehic S, Yildiz FH.

Appl Environ Microbiol. 2016 Jun 30;82(14):4441-52. doi: 10.1128/AEM.00807-16. Print 2016 Jul 15.


Biofilm Formation and Detachment in Gram-Negative Pathogens Is Modulated by Select Bile Acids.

Sanchez LM, Cheng AT, Warner CJ, Townsley L, Peach KC, Navarro G, Shikuma NJ, Bray WM, Riener RM, Yildiz FH, Linington RG.

PLoS One. 2016 Mar 18;11(3):e0149603. doi: 10.1371/journal.pone.0149603. eCollection 2016.


Species-dependent hydrodynamics of flagellum-tethered bacteria in early biofilm development.

Bennett RR, Lee CK, De Anda J, Nealson KH, Yildiz FH, O'Toole GA, Wong GC, Golestanian R.

J R Soc Interface. 2016 Feb;13(115):20150966. doi: 10.1098/rsif.2015.0966.


The LonA Protease Regulates Biofilm Formation, Motility, Virulence, and the Type VI Secretion System in Vibrio cholerae.

Rogers A, Townsley L, Gallego-Hernandez AL, Beyhan S, Kwuan L, Yildiz FH.

J Bacteriol. 2016 Jan 11;198(6):973-85. doi: 10.1128/JB.00741-15.


Systematic Identification of Cyclic-di-GMP Binding Proteins in Vibrio cholerae Reveals a Novel Class of Cyclic-di-GMP-Binding ATPases Associated with Type II Secretion Systems.

Roelofs KG, Jones CJ, Helman SR, Shang X, Orr MW, Goodson JR, Galperin MY, Yildiz FH, Lee VT.

PLoS Pathog. 2015 Oct 27;11(10):e1005232. doi: 10.1371/journal.ppat.1005232. eCollection 2015 Oct.


C-di-GMP Regulates Motile to Sessile Transition by Modulating MshA Pili Biogenesis and Near-Surface Motility Behavior in Vibrio cholerae.

Jones CJ, Utada A, Davis KR, Thongsomboon W, Zamorano Sanchez D, Banakar V, Cegelski L, Wong GC, Yildiz FH.

PLoS Pathog. 2015 Oct 27;11(10):e1005068. doi: 10.1371/journal.ppat.1005068. eCollection 2015 Oct.


CdiA promotes receptor-independent intercellular adhesion.

Ruhe ZC, Townsley L, Wallace AB, King A, Van der Woude MW, Low DA, Yildiz FH, Hayes CS.

Mol Microbiol. 2015 Oct;98(1):175-92. doi: 10.1111/mmi.13114. Epub 2015 Jul 30.


Biofilm Matrix Proteins.

Fong JNC, Yildiz FH.

Microbiol Spectr. 2015 Apr;3(2). doi: 10.1128/microbiolspec.MB-0004-2014. Review.


Vibrio cholerae Response Regulator VxrB Controls Colonization and Regulates the Type VI Secretion System.

Cheng AT, Ottemann KM, Yildiz FH.

PLoS Pathog. 2015 May 22;11(5):e1004933. doi: 10.1371/journal.ppat.1004933. eCollection 2015 May.


Living in the matrix: assembly and control of Vibrio cholerae biofilms.

Teschler JK, Zamorano-Sánchez D, Utada AS, Warner CJ, Wong GC, Linington RG, Yildiz FH.

Nat Rev Microbiol. 2015 May;13(5):255-68. doi: 10.1038/nrmicro3433. Review.


Temperature affects c-di-GMP signalling and biofilm formation in Vibrio cholerae.

Townsley L, Yildiz FH.

Environ Microbiol. 2015 Nov;17(11):4290-305. doi: 10.1111/1462-2920.12799. Epub 2015 Mar 25.


Identification and characterization of VpsR and VpsT binding sites in Vibrio cholerae.

Zamorano-Sánchez D, Fong JC, Kilic S, Erill I, Yildiz FH.

J Bacteriol. 2015 Apr;197(7):1221-35. doi: 10.1128/JB.02439-14. Epub 2015 Jan 26.


Polymyxin B resistance and biofilm formation in Vibrio cholerae are controlled by the response regulator CarR.

Bilecen K, Fong JC, Cheng A, Jones CJ, Zamorano-Sánchez D, Yildiz FH.

Infect Immun. 2015 Mar;83(3):1199-209. doi: 10.1128/IAI.02700-14. Epub 2015 Jan 12.


Development of benzo[1,4]oxazines as biofilm inhibitors and dispersal agents against Vibrio cholerae.

Warner CJ, Cheng AT, Yildiz FH, Linington RG.

Chem Commun (Camb). 2015 Jan 25;51(7):1305-8. doi: 10.1039/c4cc07003h.


Molecular determinants of mechanical properties of V. cholerae biofilms at the air-liquid interface.

Hollenbeck EC, Fong JC, Lim JY, Yildiz FH, Fuller GG, Cegelski L.

Biophys J. 2014 Nov 18;107(10):2245-52. doi: 10.1016/j.bpj.2014.10.015.


The Type II secretion system delivers matrix proteins for biofilm formation by Vibrio cholerae.

Johnson TL, Fong JC, Rule C, Rogers A, Yildiz FH, Sandkvist M.

J Bacteriol. 2014 Dec;196(24):4245-52. doi: 10.1128/JB.01944-14. Epub 2014 Sep 29.


Vibrio cholerae use pili and flagella synergistically to effect motility switching and conditional surface attachment.

Utada AS, Bennett RR, Fong JCN, Gibiansky ML, Yildiz FH, Golestanian R, Wong GCL.

Nat Commun. 2014 Sep 19;5:4913. doi: 10.1038/ncomms5913.


Vibrio cholerae utilizes direct sRNA regulation in expression of a biofilm matrix protein.

Song T, Sabharwal D, Gurung JM, Cheng AT, Sjöström AE, Yildiz FH, Uhlin BE, Wai SN.

PLoS One. 2014 Jul 23;9(7):e101280. doi: 10.1371/journal.pone.0101280. eCollection 2014.


Image-based 384-well high-throughput screening method for the discovery of skyllamycins A to C as biofilm inhibitors and inducers of biofilm detachment in Pseudomonas aeruginosa.

Navarro G, Cheng AT, Peach KC, Bray WM, Bernan VS, Yildiz FH, Linington RG.

Antimicrob Agents Chemother. 2014;58(2):1092-9. doi: 10.1128/AAC.01781-13. Epub 2013 Dec 2.


Discovery and biological characterization of the auromomycin chromophore as an inhibitor of biofilm formation in Vibrio cholerae.

Peach KC, Cheng AT, Oliver AG, Yildiz FH, Linington RG.

Chembiochem. 2013 Nov 4;14(16):2209-15. doi: 10.1002/cbic.201300131. Epub 2013 Sep 17.


Structural basis for biofilm formation via the Vibrio cholerae matrix protein RbmA.

Giglio KM, Fong JC, Yildiz FH, Sondermann H.

J Bacteriol. 2013 Jul;195(14):3277-86. doi: 10.1128/JB.00374-13. Epub 2013 May 17.


Development of quinoline-based disruptors of biofilm formation against Vibrio cholerae.

León B, Fong JC, Peach KC, Wong WR, Yildiz FH, Linington RG.

Org Lett. 2013 Mar 15;15(6):1234-7. doi: 10.1021/ol400150z. Epub 2013 Mar 5.


Molecular architecture and assembly principles of Vibrio cholerae biofilms.

Berk V, Fong JC, Dempsey GT, Develioglu ON, Zhuang X, Liphardt J, Yildiz FH, Chu S.

Science. 2012 Jul 13;337(6091):236-9. doi: 10.1126/science.1222981.


The transcriptional regulator, CosR, controls compatible solute biosynthesis and transport, motility and biofilm formation in Vibrio cholerae.

Shikuma NJ, Davis KR, Fong JN, Yildiz FH.

Environ Microbiol. 2013 May;15(5):1387-99. doi: 10.1111/j.1462-2920.2012.02805.x. Epub 2012 Jun 12.


Cellular levels and binding of c-di-GMP control subcellular localization and activity of the Vibrio cholerae transcriptional regulator VpsT.

Shikuma NJ, Fong JC, Yildiz FH.

PLoS Pathog. 2012;8(5):e1002719. doi: 10.1371/journal.ppat.1002719. Epub 2012 May 24.


You've come a long way: c-di-GMP signaling.

Sondermann H, Shikuma NJ, Yildiz FH.

Curr Opin Microbiol. 2012 Apr;15(2):140-6. doi: 10.1016/j.mib.2011.12.008. Epub 2012 Jan 5. Review.


Identification of prokaryotic small proteins using a comparative genomic approach.

Samayoa J, Yildiz FH, Karplus K.

Bioinformatics. 2011 Jul 1;27(13):1765-71. doi: 10.1093/bioinformatics/btr275. Epub 2011 May 5.


An image-based 384-well high-throughput screening method for the discovery of biofilm inhibitors in Vibrio cholerae.

Peach KC, Bray WM, Shikuma NJ, Gassner NC, Lokey RS, Yildiz FH, Linington RG.

Mol Biosyst. 2011 Apr;7(4):1176-84. doi: 10.1039/c0mb00276c. Epub 2011 Jan 18.


Identification and characterization of a phosphodiesterase that inversely regulates motility and biofilm formation in Vibrio cholerae.

Liu X, Beyhan S, Lim B, Linington RG, Yildiz FH.

J Bacteriol. 2010 Sep;192(18):4541-52. doi: 10.1128/JB.00209-10. Epub 2010 Jul 9.


Role of Vibrio polysaccharide (vps) genes in VPS production, biofilm formation and Vibrio cholerae pathogenesis.

Fong JC, Syed KA, Klose KE, Yildiz FH.

Microbiology. 2010 Sep;156(Pt 9):2757-69. doi: 10.1099/mic.0.040196-0. Epub 2010 May 13.


Vibrio cholerae VpsT regulates matrix production and motility by directly sensing cyclic di-GMP.

Krasteva PV, Fong JC, Shikuma NJ, Beyhan S, Navarro MV, Yildiz FH, Sondermann H.

Science. 2010 Feb 12;327(5967):866-8. doi: 10.1126/science.1181185.


Cell envelope perturbation induces oxidative stress and changes in iron homeostasis in Vibrio cholerae.

Sikora AE, Beyhan S, Bagdasarian M, Yildiz FH, Sandkvist M.

J Bacteriol. 2009 Sep;191(17):5398-408. doi: 10.1128/JB.00092-09. Epub 2009 Jun 19.


Overexpression of VpsS, a hybrid sensor kinase, enhances biofilm formation in Vibrio cholerae.

Shikuma NJ, Fong JC, Odell LS, Perchuk BS, Laub MT, Yildiz FH.

J Bacteriol. 2009 Aug;191(16):5147-58. doi: 10.1128/JB.00401-09. Epub 2009 Jun 12.


Identification of a calcium-controlled negative regulatory system affecting Vibrio cholerae biofilm formation.

Bilecen K, Yildiz FH.

Environ Microbiol. 2009 Aug;11(8):2015-29. doi: 10.1111/j.1462-2920.2009.01923.x. Epub 2009 Apr 9.


Indole acts as an extracellular cue regulating gene expression in Vibrio cholerae.

Mueller RS, Beyhan S, Saini SG, Yildiz FH, Bartlett DH.

J Bacteriol. 2009 Jun;191(11):3504-16. doi: 10.1128/JB.01240-08. Epub 2009 Mar 27.


Identification and characterization of OscR, a transcriptional regulator involved in osmolarity adaptation in Vibrio cholerae.

Shikuma NJ, Yildiz FH.

J Bacteriol. 2009 Jul;191(13):4082-96. doi: 10.1128/JB.01540-08. Epub 2009 Mar 27.


Vibrio biofilms: so much the same yet so different.

Yildiz FH, Visick KL.

Trends Microbiol. 2009 Mar;17(3):109-18. doi: 10.1016/j.tim.2008.12.004. Epub 2009 Feb 21. Review.


Inferring disease-related pathways using a probabilistic epistasis model.

Kanabar PN, Vaske CJ, Yeang CH, Yildiz FH, Stuart JM.

Pac Symp Biocomput. 2009:480-91.


Identification and characterization of cyclic diguanylate signaling systems controlling rugosity in Vibrio cholerae.

Beyhan S, Odell LS, Yildiz FH.

J Bacteriol. 2008 Nov;190(22):7392-405. doi: 10.1128/JB.00564-08. Epub 2008 Sep 12.

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