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Items: 47

1.

BioNorm: Deep learning based event normalization for the curation of reaction databases.

Lou P, Yepes AJ, Zhang Z, Zheng Q, Zhang X, Li C.

Bioinformatics. 2019 Jul 26. pii: btz571. doi: 10.1093/bioinformatics/btz571. [Epub ahead of print]

PMID:
31350561
2.

[Social reimbursement-the Spanish-German ENT Society's (SDGHNO) Latin America project].

Offergeld C, Zahnert T, Caro J, Prieto JA, Centeno J, Laszig R, Schwager K, Bockmühl U, Praetorius M, Baumann I, Bootz F, Schmidt T, Yepes A, Schipper J.

HNO. 2019 Jul;67(7):515-518. doi: 10.1007/s00106-019-0698-3. Review. German.

PMID:
31197423
3.

A hybrid approach for automated mutation annotation of the extended human mutation landscape in scientific literature.

Yepes AJ, MacKinlay A, Gunn N, Schieber C, Faux N, Downton M, Goudey B, Martin RL.

AMIA Annu Symp Proc. 2018 Dec 5;2018:616-623. eCollection 2018.

4.

Detection of Adverse Drug Reactions using Medical Named Entities on Twitter.

MacKinlay A, Aamer H, Yepes AJ.

AMIA Annu Symp Proc. 2018 Apr 16;2017:1215-1224. eCollection 2017.

5.

Hybrid Molecules: Promising Compounds for the Development of New Treatments Against Leishmaniasis and Chagas Disease.

Cardona-G W, Yepes AF, Herrera-R A.

Curr Med Chem. 2018;25(30):3637-3679. doi: 10.2174/0929867325666180309111428. Review.

PMID:
29521209
6.

Attenuating Staphylococcus aureus Virulence by Targeting Flotillin Protein Scaffold Activity.

Koch G, Wermser C, Acosta IC, Kricks L, Stengel ST, Yepes A, Lopez D.

Cell Chem Biol. 2017 Jul 20;24(7):845-857.e6. doi: 10.1016/j.chembiol.2017.05.027. Epub 2017 Jun 29.

7.

[Recommendations for the management of pancreatic cancer type adenocarcinoma: A consensus statement reached during the 2015 Latin American Symposium on Gastroenterological Oncology].

Caglevic C, Gallardo J, de la Torre M, Mahave M, Müller B, Solé S, Moscoso Y, De La Fuente H, Roa JC, Hoefler S, Butte JM, González M P, O'Connor JM, Torres J, Pérez Encalada V, Alarcón Cano D, Ubillos L, Rolfo C, Lingua A, Díaz Romero C, Padilla Rosciano A, Cuartero V, Calderillo Ruiz G, Schwartsmann G, Kon Jara X, Andrade G A, Mas López L, Barajas O, Carballido M, Lembach H, Morillas G L, Roca E, Lobatón J, Montenegro B P, Yepes A, Marsiglia H.

Rev Med Chil. 2016 Oct;144(10):1305-1318. doi: 10.4067/S0034-98872016001000010. Spanish.

8.

177Lu-DOTATATE treatment in neuroendocrine tumours. A preliminary study.

Hervás I, Bello P, Falgas M, Del Olmo MI, Torres I, Olivas C, Vera V, Oliván P, Yepes AM.

Rev Esp Med Nucl Imagen Mol. 2017 Mar - Apr;36(2):91-98. doi: 10.1016/j.remn.2016.10.003. Epub 2016 Nov 23. English, Spanish.

PMID:
27889527
9.

[Tree above-ground biomass allometries for carbon stocks estimation in the Caribbean mangroves in Colombia].

Yepes A, Zapata M, Bolivar J, Monsalve A, Espinosa SM, Sierra-Correa PC, Sierra A.

Rev Biol Trop. 2016 Jun;64(2):913-26. Spanish.

PMID:
29451977
10.

[Biomass and total carbon in oak forests of Southern Colombian Andes: contributions to the REDD+ project-wide approach].

Yepes A, Sierra A, Niño LM, López M, Garay C, Vargas D, Cabrera E, Barbosa A.

Rev Biol Trop. 2016 Mar;64(1):399-412. Spanish. No abstract available.

PMID:
28862827
11.

[Contribution of tropical upland forests to carbon storage in Colombia].

Yepes A, Herrera J, Phillips J, Galindo G, Granados E, Duque A, Barbosa A, Olarte C, Cardona M.

Rev Biol Trop. 2015 Mar;63(1):69-82. Spanish.

PMID:
26299116
12.

Synthetic Cannabinoids.

Mills B, Yepes A, Nugent K.

Am J Med Sci. 2015 Jul;350(1):59-62. doi: 10.1097/MAJ.0000000000000466. Review.

PMID:
26132518
13.

The two kinases, AbrC1 and AbrC2, of the atypical two-component system AbrC are needed to regulate antibiotic production and differentiation in Streptomyces coelicolor.

Rodríguez H, Rico S, Yepes A, Franco-Echevarría E, Antoraz S, Santamaría RI, Díaz M.

Front Microbiol. 2015 May 12;6:450. doi: 10.3389/fmicb.2015.00450. eCollection 2015.

14.

Regulation of the AbrA1/A2 two-component system in Streptomyces coelicolor and the potential of its deletion strain as a heterologous host for antibiotic production.

Rico S, Yepes A, Rodríguez H, Santamaría J, Antoraz S, Krause EM, Díaz M, Santamaría RI.

PLoS One. 2014 Oct 10;9(10):e109844. doi: 10.1371/journal.pone.0109844. eCollection 2014.

15.

Evolution of resistance to a last-resort antibiotic in Staphylococcus aureus via bacterial competition.

Koch G, Yepes A, Förstner KU, Wermser C, Stengel ST, Modamio J, Ohlsen K, Foster KR, Lopez D.

Cell. 2014 Aug 28;158(5):1060-1071. doi: 10.1016/j.cell.2014.06.046.

16.

BioC interoperability track overview.

Comeau DC, Batista-Navarro RT, Dai HJ, Doğan RI, Yepes AJ, Khare R, Lu Z, Marques H, Mattingly CJ, Neves M, Peng Y, Rak R, Rinaldi F, Tsai RT, Verspoor K, Wiegers TC, Wu CH, Wilbur WJ.

Database (Oxford). 2014 Jun 30;2014. pii: bau053. doi: 10.1093/database/bau053. Print 2014. Review.

17.

Reconstruction of mreB expression in Staphylococcus aureus via a collection of new integrative plasmids.

Yepes A, Koch G, Waldvogel A, Garcia-Betancur JC, Lopez D.

Appl Environ Microbiol. 2014 Jul;80(13):3868-78. doi: 10.1128/AEM.00759-14. Epub 2014 Apr 18.

18.

Comparison and combination of several MeSH indexing approaches.

Yepes AJ, Mork JG, Demner-Fushman D, Aronson AR.

AMIA Annu Symp Proc. 2013 Nov 16;2013:709-18. eCollection 2013.

19.

Deciphering the regulon of Streptomyces coelicolor AbrC3, a positive response regulator of antibiotic production.

Rico S, Santamaría RI, Yepes A, Rodríguez H, Laing E, Bucca G, Smith CP, Díaz M.

Appl Environ Microbiol. 2014 Apr;80(8):2417-28. doi: 10.1128/AEM.03378-13. Epub 2014 Feb 7.

20.

Combining MEDLINE and publisher data to create parallel corpora for the automatic translation of biomedical text.

Yepes AJ, Prieur-Gaston E, Névéol A.

BMC Bioinformatics. 2013 Apr 30;14:146. doi: 10.1186/1471-2105-14-146.

22.

Three closely related thienyl-substituted 1,4-epoxynaphtho[1,2-b]azepines: hydrogen-bonded assembly in one, two and three dimensions.

Yépes AF, Palma A, Cobo J, Glidewell C.

Acta Crystallogr C. 2013 Mar;69(Pt 3):307-12. doi: 10.1107/S0108270113004551. Epub 2013 Feb 20.

PMID:
23459362
23.

Six closely related 4,6-disubstituted 2-amino-5-formylpyrimidines: different ring conformations, polarized electronic structures, and hydrogen-bonded assembly in zero, one, two and three dimensions.

Acosta LM, Yepes AF, Palma A, Cobo J, Glidewell C.

Acta Crystallogr C. 2013 Feb;69(Pt 2):162-71. doi: 10.1107/S0108270112051049. Epub 2013 Jan 8.

PMID:
23377684
24.

The biofilm formation defect of a Bacillus subtilis flotillin-defective mutant involves the protease FtsH.

Yepes A, Schneider J, Mielich B, Koch G, García-Betancur JC, Ramamurthi KS, Vlamakis H, López D.

Mol Microbiol. 2012 Oct;86(2):457-71. doi: 10.1111/j.1365-2958.2012.08205.x. Epub 2012 Aug 24.

25.
26.

(2RS,4SR)-7-bromo-2-exo-(2-chlorophenyl)-2,3,4,5-tetrahydro-1,4-epoxynaphtho[1,2-b]azepine: sheets built by the π-stacking of hydrogen-bonded chains.

Yépes AF, Palma A, Cobo J, Glidewell C.

Acta Crystallogr C. 2012 Mar;68(Pt 3):o123-5. doi: 10.1107/S0108270112004520. Epub 2012 Feb 23.

PMID:
22382546
27.

Single-cell analysis of Bacillus subtilis biofilms using fluorescence microscopy and flow cytometry.

Garcia-Betancur JC, Yepes A, Schneider J, Lopez D.

J Vis Exp. 2012 Feb 15;(60). pii: 3796. doi: 10.3791/3796.

28.

Streptomycin-induced expression in Bacillus subtilis of YtnP, a lactonase-homologous protein that inhibits development and streptomycin production in Streptomyces griseus.

Schneider J, Yepes A, Garcia-Betancur JC, Westedt I, Mielich B, López D.

Appl Environ Microbiol. 2012 Jan;78(2):599-603. doi: 10.1128/AEM.06992-11. Epub 2011 Nov 18.

29.

Nutritional evaluation of fruit and vegetable waste as feedstuff for diets of lactating Holstein cows.

Angulo J, Mahecha L, Yepes SA, Yepes AM, Bustamante G, Jaramillo H, Valencia E, Villamil T, Gallo J.

J Environ Manage. 2012 Mar;95 Suppl:S210-4. doi: 10.1016/j.jenvman.2011.06.050. Epub 2011 Jul 23.

PMID:
21784573
30.

Novel two-component systems implied in antibiotic production in Streptomyces coelicolor.

Yepes A, Rico S, Rodríguez-García A, Santamaría RI, Díaz M.

PLoS One. 2011;6(5):e19980. doi: 10.1371/journal.pone.0019980. Epub 2011 May 20.

31.

Quantitative and nutritional characterization of fruit and vegetable waste from marketplace: a potential use as bovine feedstuff?

Angulo J, Mahecha L, Yepes SA, Yepes AM, Bustamante G, Jaramillo H, Valencia E, Villamil T, Gallo J.

J Environ Manage. 2012 Mar;95 Suppl:S203-9. doi: 10.1016/j.jenvman.2010.09.022. Epub 2011 Feb 1.

PMID:
21277675
32.

Ring conformations and intermolecular interactions in two fused dibenzoazocines.

Yepes AF, Jaimes E, Bahsas A, Palma A, Hursthouse MB, Cobo J, Glidewell C.

Acta Crystallogr C. 2010 Jun;66(Pt 6):o284-8. doi: 10.1107/S0108270110014708. Epub 2010 May 8.

PMID:
20522946
33.

[Structural recovering in Andean successional forests from Porce (Antioquia, Colombia)].

Yepes AP, del Valle JI, Jaramillo SL, Orrego SA.

Rev Biol Trop. 2010 Mar;58(1):427-45. Spanish.

PMID:
20411733
34.

[Structure and floristic composition of three oak forests in the northern region of the Central Cordillera in Colombia].

León JD, Vélez G, Yepes AP.

Rev Biol Trop. 2009 Dec;57(4):1165-82. Spanish.

PMID:
20073342
36.

Synthesis and in vitro activity of new tetrahydronaphtho[1,2-b]azepine derivatives against Trypanosoma cruzi and Leishmania chagasi parasites.

Palma A, Yépes AF, Leal SM, Coronado CA, Escobar P.

Bioorg Med Chem Lett. 2009 Apr 15;19(8):2360-3. doi: 10.1016/j.bmcl.2008.05.013. Epub 2008 May 6.

PMID:
19321339
37.

Expression of the pstS gene of Streptomyces lividans is regulated by the carbon source and is partially independent of the PhoP regulator.

Esteban A, Díaz M, Yepes A, Santamaría RI.

BMC Microbiol. 2008 Nov 19;8:201. doi: 10.1186/1471-2180-8-201.

38.

Colchicine mouth washings to improve oral mucositis in patients with hematological malignancies: a clinical trial.

Garavito AA, Cardona AF, Reveiz L, Ospina E, Yepes A, Ospina V.

Palliat Support Care. 2008 Dec;6(4):371-6. doi: 10.1017/S147895150800059X.

PMID:
19006592
39.

Strict glycaemic control in patients hospitalised in a mixed medical and surgical intensive care unit: a randomised clinical trial.

De La Rosa Gdel C, Donado JH, Restrepo AH, Quintero AM, González LG, Saldarriaga NE, Bedoya M, Toro JM, Velásquez JB, Valencia JC, Arango CM, Aleman PH, Vasquez EM, Chavarriaga JC, Yepes A, Pulido W, Cadavid CA; Grupo de Investigacion en Cuidado intensivo: GICI-HPTU.

Crit Care. 2008;12(5):R120. doi: 10.1186/cc7017. Epub 2008 Sep 17.

40.

High-level overproduction of Thermus enzymes in Streptomyces lividans.

Díaz M, Ferreras E, Moreno R, Yepes A, Berenguer J, Santamaría R.

Appl Microbiol Biotechnol. 2008 Jul;79(6):1001-8. doi: 10.1007/s00253-008-1495-1. Epub 2008 May 7.

PMID:
18461317
41.

Palliative endobronchial brachytherapy for non-small cell lung cancer.

Cardona AF, Reveiz L, Ospina EG, Ospina V, Yepes A.

Cochrane Database Syst Rev. 2008 Apr 16;(2):CD004284. doi: 10.1002/14651858.CD004284.pub2. Review. Update in: Cochrane Database Syst Rev. 2012;12:CD004284.

PMID:
18425900
42.

Addressing current challenges to cardiac rehabilitation care.

Liehr P, Leaverton R, Yepes A, Frazier L, Fuentes F.

AACN Clin Issues. 2003 Feb;14(1):13-24. Review.

PMID:
12574699
43.

[Viral genotypes in patients with hepatitis C virus infection in Medellín].

Yepes A, Alvarez C, Restrepo JC, Correa G, Zapata JC, Arango AE.

Gastroenterol Hepatol. 2002 May;25(5):334-5. Spanish. No abstract available.

PMID:
11985808
44.

Relationship between peak exercise oxygen consumption and QTC in patients with advanced heart failure.

Boccalandro F, Yepes A, Velasco A, Thomas CD, Bologna M, Richartz B, Radovancevic B.

J Heart Lung Transplant. 2001 Feb;20(2):164. No abstract available.

PMID:
11250250
45.

Adenosine use during aortocoronary vein graft interventions reverses but does not prevent the slow-no reflow phenomenon.

Sdringola S, Assali A, Ghani M, Yepes A, Rosales O, Schroth GW, Fujise K, Anderson HV, Smalling RW.

Catheter Cardiovasc Interv. 2000 Dec;51(4):394-9.

PMID:
11108667
46.

Intracoronary adenosine administered during percutaneous intervention in acute myocardial infarction and reduction in the incidence of "no reflow" phenomenon.

Assali AR, Sdringola S, Ghani M, Denkats AE, Yepes A, Hanna GP, Schroth G, Fujise K, Anderson HV, Smalling RW, Rosales OR.

Catheter Cardiovasc Interv. 2000 Sep;51(1):27-31; discussion 32.

PMID:
10973014
47.

[Epidemic outbreak of tinea corporis due to Microsporum gypseum].

Sierra de Arroyave B, Yepes A, Arenas J, Santamaría de Uribe L, Restrepo A.

Mycopathologia. 1977 Apr 29;60(3):135-8. Spanish.

PMID:
865596

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