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Items: 25

1.

Quantification of Urease Activity.

Richmond S, Yep A.

Methods Mol Biol. 2019;2021:85-96. doi: 10.1007/978-1-4939-9601-8_9.

PMID:
31309498
2.

The Pathogenic Potential of Proteus mirabilis Is Enhanced by Other Uropathogens during Polymicrobial Urinary Tract Infection.

Armbruster CE, Smith SN, Johnson AO, DeOrnellas V, Eaton KA, Yep A, Mody L, Wu W, Mobley HLT.

Infect Immun. 2017 Jan 26;85(2). pii: e00808-16. doi: 10.1128/IAI.00808-16. Print 2017 Feb.

3.

Effect of Headgroups on Small-Ion Permeability across Archaea-Inspired Tetraether Lipid Membranes.

Koyanagi T, Leriche G, Yep A, Onofrei D, Holland GP, Mayer M, Yang J.

Chemistry. 2016 Jun 6;22(24):8074-7. doi: 10.1002/chem.201601326. Epub 2016 May 3.

PMID:
27142341
4.

Inhibitors of TonB function identified by a high-throughput screen for inhibitors of iron acquisition in uropathogenic Escherichia coli CFT073.

Yep A, McQuade T, Kirchhoff P, Larsen M, Mobley HL.

mBio. 2014 Feb 25;5(2):e01089-13. doi: 10.1128/mBio.01089-13.

5.

Increased incidence of urolithiasis and bacteremia during Proteus mirabilis and Providencia stuartii coinfection due to synergistic induction of urease activity.

Armbruster CE, Smith SN, Yep A, Mobley HL.

J Infect Dis. 2014 May 15;209(10):1524-32. doi: 10.1093/infdis/jit663. Epub 2013 Nov 26.

6.

Transcriptome of Proteus mirabilis in the murine urinary tract: virulence and nitrogen assimilation gene expression.

Pearson MM, Yep A, Smith SN, Mobley HL.

Infect Immun. 2011 Jul;79(7):2619-31. doi: 10.1128/IAI.05152-11. Epub 2011 Apr 19.

7.

Characterization of a thiamin diphosphate-dependent phenylpyruvate decarboxylase from Saccharomyces cerevisiae.

Kneen MM, Stan R, Yep A, Tyler RP, Saehuan C, McLeish MJ.

FEBS J. 2011 Jun;278(11):1842-53. doi: 10.1111/j.1742-4658.2011.08103.x. Epub 2011 Apr 18.

8.

A unique arabinose 5-phosphate isomerase found within a genomic island associated with the uropathogenicity of Escherichia coli CFT073.

Mosberg JA, Yep A, Meredith TC, Smith S, Wang PF, Holler TP, Mobley HL, Woodard RW.

J Bacteriol. 2011 Jun;193(12):2981-8. doi: 10.1128/JB.00033-11. Epub 2011 Apr 15.

9.

Enediol mimics as inhibitors of the D-arabinose 5-phosphate isomerase (KdsD) from Francisella tularensis.

Yep A, Sorenson RJ, Wilson MR, Showalter HD, Larsen SD, Keller PR, Woodard RW.

Bioorg Med Chem Lett. 2011 May 1;21(9):2679-82. doi: 10.1016/j.bmcl.2010.12.066. Epub 2010 Dec 19.

PMID:
21236668
10.

Oligosaccharide binding in Escherichia coli glycogen synthase.

Sheng F, Yep A, Feng L, Preiss J, Geiger JH.

Biochemistry. 2009 Oct 27;48(42):10089-97. doi: 10.1021/bi900916t.

PMID:
19761218
11.

Engineering the substrate binding site of benzoylformate decarboxylase.

Yep A, McLeish MJ.

Biochemistry. 2009 Sep 8;48(35):8387-95. doi: 10.1021/bi9008402.

PMID:
19621900
12.

Snapshot of a reaction intermediate: analysis of benzoylformate decarboxylase in complex with a benzoylphosphonate inhibitor.

Brandt GS, Kneen MM, Chakraborty S, Baykal AT, Nemeria N, Yep A, Ruby DI, Petsko GA, Kenyon GL, McLeish MJ, Jordan F, Ringe D.

Biochemistry. 2009 Apr 21;48(15):3247-57. doi: 10.1021/bi801950k.

13.

The crystal structures of the open and catalytically competent closed conformation of Escherichia coli glycogen synthase.

Sheng F, Jia X, Yep A, Preiss J, Geiger JH.

J Biol Chem. 2009 Jun 26;284(26):17796-807. doi: 10.1074/jbc.M809804200. Epub 2009 Feb 25.

14.

Detection and time course of formation of major thiamin diphosphate-bound covalent intermediates derived from a chromophoric substrate analogue on benzoylformate decarboxylase.

Chakraborty S, Nemeria NS, Balakrishnan A, Brandt GS, Kneen MM, Yep A, McLeish MJ, Kenyon GL, Petsko GA, Ringe D, Jordan F.

Biochemistry. 2009 Feb 10;48(5):981-94. doi: 10.1021/bi801810h.

15.

Using directed evolution to probe the substrate specificity of mandelamide hydrolase.

Wang PF, Yep A, Kenyon GL, McLeish MJ.

Protein Eng Des Sel. 2009 Feb;22(2):103-10. doi: 10.1093/protein/gzn073. Epub 2008 Dec 10.

PMID:
19074156
16.

Probing the active center of benzaldehyde lyase with substitutions and the pseudosubstrate analogue benzoylphosphonic acid methyl ester.

Brandt GS, Nemeria N, Chakraborty S, McLeish MJ, Yep A, Kenyon GL, Petsko GA, Jordan F, Ringe D.

Biochemistry. 2008 Jul 22;47(29):7734-43. doi: 10.1021/bi8004413. Epub 2008 Jun 21.

17.

Physical, kinetic and spectrophotometric studies of a NAD(P)-dependent benzaldehyde dehydrogenase from Pseudomonas putida ATCC 12633.

Yeung CK, Yep A, Kenyon GL, McLeish MJ.

Biochim Biophys Acta. 2008 Sep;1784(9):1248-55. doi: 10.1016/j.bbapap.2008.04.015. Epub 2008 May 2.

PMID:
18498778
18.

Saturation mutagenesis of putative catalytic residues of benzoylformate decarboxylase provides a challenge to the accepted mechanism.

Yep A, Kenyon GL, McLeish MJ.

Proc Natl Acad Sci U S A. 2008 Apr 15;105(15):5733-8. doi: 10.1073/pnas.0709657105. Epub 2008 Apr 8.

19.

Mechanism of benzaldehyde lyase studied via thiamin diphosphate-bound intermediates and kinetic isotope effects.

Chakraborty S, Nemeria N, Yep A, McLeish MJ, Kenyon GL, Jordan F.

Biochemistry. 2008 Mar 25;47(12):3800-9. doi: 10.1021/bi702302u. Epub 2008 Mar 4.

PMID:
18314961
20.

Determinants of substrate specificity in KdcA, a thiamin diphosphate-dependent decarboxylase.

Yep A, Kenyon GL, McLeish MJ.

Bioorg Chem. 2006 Dec;34(6):325-36. Epub 2006 Oct 9.

PMID:
17028071
21.

The ADP-glucose binding site of the Escherichia coli glycogen synthase.

Yep A, Ballicora MA, Preiss J.

Arch Biochem Biophys. 2006 Sep 15;453(2):188-96. Epub 2006 Jul 31.

PMID:
16919233
22.

The active site of the Escherichia coli glycogen synthase is similar to the active site of retaining GT-B glycosyltransferases.

Yep A, Ballicora MA, Preiss J.

Biochem Biophys Res Commun. 2004 Apr 9;316(3):960-6.

PMID:
15033495
23.

Identification and characterization of a critical region in the glycogen synthase from Escherichia coli.

Yep A, Ballicora MA, Sivak MN, Preiss J.

J Biol Chem. 2004 Feb 27;279(9):8359-67. Epub 2003 Dec 9.

24.

An assay for adenosine 5'-diphosphate (ADP)-glucose pyrophosphorylase that measures the synthesis of radioactive ADP-glucose with glycogen synthase.

Yep A, Bejar CM, Ballicora MA, Dubay JR, Iglesias AA, Preiss J.

Anal Biochem. 2004 Jan 1;324(1):52-9.

PMID:
14654045
25.

Junin virus-induced astrocytosis is impaired by iNOS inhibition.

Gómez RM, Yep A, Schattner M, Berría MI.

J Med Virol. 2003 Jan;69(1):145-9.

PMID:
12436490

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