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Pelleted-hay alfalfa feed increases sheep wether weight gain and rumen bacterial richness over loose-hay alfalfa feed.

Ishaq SL, Lachman MM, Wenner BA, Baeza A, Butler M, Gates E, Olivo S, Geddes JB, Hatfield P, Yeoman CJ.

PLoS One. 2019 Jun 5;14(6):e0215797. doi: 10.1371/journal.pone.0215797. eCollection 2019.


Gut microbiome composition of wild western lowland gorillas is associated with individual age and sex factors.

Pafčo B, Sharma AK, Petrželková KJ, Vlčková K, Todd A, Yeoman CJ, Wilson BA, Stumpf R, White BA, Nelson KE, Leigh S, Gomez A.

Am J Phys Anthropol. 2019 Jul;169(3):575-585. doi: 10.1002/ajpa.23842. Epub 2019 Apr 25.


Complete Genome Sequence of Hypervirulent Streptococcus pyogenesemm3 Strain 1838.

Lei B, Flores AR, Yeoman C, Liu M.

Microbiol Resour Announc. 2019 Jan 10;8(2). pii: e01494-18. doi: 10.1128/MRA.01494-18. eCollection 2019 Jan.


Zinc AA supplementation alters yearling ram rumen bacterial communities but zinc sulfate supplementation does not.

Ishaq SL, Page CM, Yeoman CJ, Murphy TW, Van Emon ML, Stewart WC.

J Anim Sci. 2019 Feb 1;97(2):687-697. doi: 10.1093/jas/sky456.


Relationships Between Gastrointestinal Parasite Infections and the Fecal Microbiome in Free-Ranging Western Lowland Gorillas.

Vlčková K, Pafčo B, Petrželková KJ, Modrý D, Todd A, Yeoman CJ, Torralba M, Wilson BA, Stumpf RM, White BA, Nelson KE, Leigh SR, Gomez A.

Front Microbiol. 2018 Jun 15;9:1202. doi: 10.3389/fmicb.2018.01202. eCollection 2018.


Continual near-infrared spectroscopy monitoring in the injured lower limb and acute compartment syndrome: an FDA-IDE trial.

Shuler MS, Roskosky M, Kinsey T, Glaser D, Reisman W, Ogburn C, Yeoman C, Wanderman NR, Freedman B.

Bone Joint J. 2018 Jun 1;100-B(6):787-797. doi: 10.1302/0301-620X.100B6.BJJ-2017-0736.R3.


Water system is a controlling variable modulating bacterial diversity of gastrointestinal tract and performance in rainbow trout.

Betiku OC, Yeoman CJ, Gaylord TG, Americus B, Olivo S, Duff GC, Sealey WM.

PLoS One. 2018 Apr 17;13(4):e0195967. doi: 10.1371/journal.pone.0195967. eCollection 2018.


Biogeographical Differences in the Influence of Maternal Microbial Sources on the Early Successional Development of the Bovine Neonatal Gastrointestinal tract.

Yeoman CJ, Ishaq SL, Bichi E, Olivo SK, Lowe J, Aldridge BM.

Sci Rep. 2018 Feb 16;8(1):3197. doi: 10.1038/s41598-018-21440-8.


Cigarette smoking is associated with an altered vaginal tract metabolomic profile.

Nelson TM, Borgogna JC, Michalek RD, Roberts DW, Rath JM, Glover ED, Ravel J, Shardell MD, Yeoman CJ, Brotman RM.

Sci Rep. 2018 Jan 16;8(1):852. doi: 10.1038/s41598-017-14943-3.


Ground Juniperus pinchotii and urea in supplements fed to Rambouillet ewe lambs Part 2: Ewe lamb rumen microbial communities.

Ishaq SL, Yeoman CJ, Whitney TR.

J Anim Sci. 2017 Oct;95(10):4587-4599. doi: 10.2527/jas2017.1731.


Feed efficiency phenotypes in lambs involve changes in ruminal, colonic, and small-intestine-located microbiota.

Perea K, Perz K, Olivo SK, Williams A, Lachman M, Ishaq SL, Thomson J, Yeoman CJ.

J Anim Sci. 2017 Jun;95(6):2585-2592. doi: 10.2527/jas.2016.1222.


Null Mutations of Group A Streptococcus Orphan Kinase RocA: Selection in Mouse Infection and Comparison with CovS Mutations in Alteration of In Vitro and In Vivo Protease SpeB Expression and Virulence.

Feng W, Minor D, Liu M, Li J, Ishaq SL, Yeoman C, Lei B.

Infect Immun. 2016 Dec 29;85(1). pii: e00790-16. doi: 10.1128/IAI.00790-16. Print 2017 Jan.


Effect of Antibiotic Treatment on the Gastrointestinal Microbiome of Free-Ranging Western Lowland Gorillas (Gorilla g. gorilla).

Vlčková K, Gomez A, Petrželková KJ, Whittier CA, Todd AF, Yeoman CJ, Nelson KE, Wilson BA, Stumpf RM, Modrý D, White BA, Leigh SR.

Microb Ecol. 2016 Nov;72(4):943-954. Epub 2016 Mar 16.


Impact of Cropping Systems, Soil Inoculum, and Plant Species Identity on Soil Bacterial Community Structure.

Ishaq SL, Johnson SP, Miller ZJ, Lehnhoff EA, Olivo S, Yeoman CJ, Menalled FD.

Microb Ecol. 2017 Feb;73(2):417-434. doi: 10.1007/s00248-016-0861-2. Epub 2016 Sep 27.


Erratum to: Unraveling the pectinolytic function of Bacteroides xylanisolvens using a RNA-seq approach and mutagenesis.

Despres J, Forano E, Lepercq P, Comtet-Marre S, Jubelin G, Yeoman CJ, Miller ME, Fields CJ, Terrapon N, Le Bourvellec C, Renard CM, Henrissat B, White BA, Mosoni P.

BMC Genomics. 2016 Jun 6;17(1):426. No abstract available.


Xylan degradation by the human gut Bacteroides xylanisolvens XB1A(T) involves two distinct gene clusters that are linked at the transcriptional level.

Despres J, Forano E, Lepercq P, Comtet-Marre S, Jubelin G, Chambon C, Yeoman CJ, Berg Miller ME, Fields CJ, Martens E, Terrapon N, Henrissat B, White BA, Mosoni P.

BMC Genomics. 2016 May 4;17:326. doi: 10.1186/s12864-016-2680-8.


Gut Microbiome of Coexisting BaAka Pygmies and Bantu Reflects Gradients of Traditional Subsistence Patterns.

Gomez A, Petrzelkova KJ, Burns MB, Yeoman CJ, Amato KR, Vlckova K, Modry D, Todd A, Jost Robinson CA, Remis MJ, Torralba MG, Morton E, Umaña JD, Carbonero F, Gaskins HR, Nelson KE, Wilson BA, Stumpf RM, White BA, Leigh SR, Blekhman R.

Cell Rep. 2016 Mar 8;14(9):2142-2153. doi: 10.1016/j.celrep.2016.02.013. Epub 2016 Feb 25.


Unraveling the pectinolytic function of Bacteroides xylanisolvens using a RNA-seq approach and mutagenesis.

Despres J, Forano E, Lepercq P, Comtet-Marre S, Jubelin G, Yeoman CJ, Miller ME, Fields CJ, Terrapon N, Le Bourvellec C, Renard CM, Henrissat B, White BA, Mosoni P.

BMC Genomics. 2016 Feb 27;17:147. doi: 10.1186/s12864-016-2472-1. Erratum in: BMC Genomics. 2016;17:426.


Temporal variation selects for diet-microbe co-metabolic traits in the gut of Gorilla spp.

Gomez A, Rothman JM, Petrzelkova K, Yeoman CJ, Vlckova K, Umaña JD, Carr M, Modry D, Todd A, Torralba M, Nelson KE, Stumpf RM, Wilson BA, Blekhman R, White BA, Leigh SR.

ISME J. 2016 Feb;10(2):532. doi: 10.1038/ismej.2015.252. No abstract available.


Variable responses of human and non-human primate gut microbiomes to a Western diet.

Amato KR, Yeoman CJ, Cerda G, Schmitt CA, Cramer JD, Miller ME, Gomez A, Turner TR, Wilson BA, Stumpf RM, Nelson KE, White BA, Knight R, Leigh SR.

Microbiome. 2015 Nov 16;3:53. doi: 10.1186/s40168-015-0120-7.


Vaginal biogenic amines: biomarkers of bacterial vaginosis or precursors to vaginal dysbiosis?

Nelson TM, Borgogna JL, Brotman RM, Ravel J, Walk ST, Yeoman CJ.

Front Physiol. 2015 Sep 29;6:253. doi: 10.3389/fphys.2015.00253. eCollection 2015.


Temporal variation selects for diet-microbe co-metabolic traits in the gut of Gorilla spp.

Gomez A, Rothman JM, Petrzelkova K, Yeoman CJ, Vlckova K, Umaña JD, Carr M, Modry D, Todd A, Torralba M, Nelson KE, Stumpf RM, Wilson BA, Blekhman R, White BA, Leigh SR.

ISME J. 2016 Feb;10(2):514-26. doi: 10.1038/ismej.2015.146. Epub 2015 Aug 28. Erratum in: ISME J. 2016 Feb;10(2):532.


Caste-specific differences in hindgut microbial communities of honey bees (Apis mellifera).

Kapheim KM, Rao VD, Yeoman CJ, Wilson BA, White BA, Goldenfeld N, Robinson GE.

PLoS One. 2015 Apr 15;10(4):e0123911. doi: 10.1371/journal.pone.0123911. eCollection 2015.


Gut microbiome composition and metabolomic profiles of wild western lowland gorillas (Gorilla gorilla gorilla) reflect host ecology.

Gomez A, Petrzelkova K, Yeoman CJ, Vlckova K, Mrázek J, Koppova I, Carbonero F, Ulanov A, Modry D, Todd A, Torralba M, Nelson KE, Gaskins HR, Wilson B, Stumpf RM, White BA, Leigh SR.

Mol Ecol. 2015 May;24(10):2551-65. doi: 10.1111/mec.13181.


Functional phylotyping approach for assessing intraspecific diversity of Ruminococcus albus within the rumen microbiome.

Rozman Grinberg I, Yin G, Borovok I, Berg Miller ME, Yeoman CJ, Dassa B, Yu Z, Mizrahi I, Flint HJ, Bayer EA, White BA, Lamed R.

FEMS Microbiol Lett. 2015 Jan;362(3):1-10. doi: 10.1093/femsle/fnu047. Epub 2014 Dec 22.


The gut microbiota appears to compensate for seasonal diet variation in the wild black howler monkey (Alouatta pigra).

Amato KR, Leigh SR, Kent A, Mackie RI, Yeoman CJ, Stumpf RM, Wilson BA, Nelson KE, White BA, Garber PA.

Microb Ecol. 2015 Feb;69(2):434-43. doi: 10.1007/s00248-014-0554-7. Epub 2014 Dec 19.


Gastrointestinal tract microbiota and probiotics in production animals.

Yeoman CJ, White BA.

Annu Rev Anim Biosci. 2014 Feb;2:469-86. doi: 10.1146/annurev-animal-022513-114149. Epub 2013 Oct 16. Review.


Anterior lumbar interbody fusion: two-year results with a modular interbody device.

Jackson KL, Yeoman C, Chung WM, Chappuis JL, Freedman B.

Asian Spine J. 2014 Oct;8(5):591-8. doi: 10.4184/asj.2014.8.5.591. Epub 2014 Oct 18.


The role of gut microbes in satisfying the nutritional demands of adult and juvenile wild, black howler monkeys (Alouatta pigra).

Amato KR, Leigh SR, Kent A, Mackie RI, Yeoman CJ, Stumpf RM, Wilson BA, Nelson KE, White BA, Garber PA.

Am J Phys Anthropol. 2014 Dec;155(4):652-64. doi: 10.1002/ajpa.22621. Epub 2014 Sep 23.


The combat burst fracture study--results of a cohort analysis of the most prevalent combat specific mechanism of major thoracolumbar spinal injury.

Freedman BA, Serrano JA, Belmont PJ Jr, Jackson KL, Cameron B, Neal CJ, Wells R, Yeoman C, Schoenfeld AJ.

Arch Orthop Trauma Surg. 2014 Oct;134(10):1353-9. doi: 10.1007/s00402-014-2066-9. Epub 2014 Aug 9.


Temporal dynamics of fibrolytic and methanogenic rumen microorganisms during in situ incubation of switchgrass determined by 16S rRNA gene profiling.

Piao H, Lachman M, Malfatti S, Sczyrba A, Knierim B, Auer M, Tringe SG, Mackie RI, Yeoman CJ, Hess M.

Front Microbiol. 2014 Jul 22;5:307. doi: 10.3389/fmicb.2014.00307. eCollection 2014.


Primate vaginal microbiomes exhibit species specificity without universal Lactobacillus dominance.

Yildirim S, Yeoman CJ, Janga SC, Thomas SM, Ho M, Leigh SR; Primate Microbiome Consortium, White BA, Wilson BA, Stumpf RM.

ISME J. 2014 Dec;8(12):2431-44. doi: 10.1038/ismej.2014.90. Epub 2014 Jul 18.


Rumen cellulosomics: divergent fiber-degrading strategies revealed by comparative genome-wide analysis of six ruminococcal strains.

Dassa B, Borovok I, Ruimy-Israeli V, Lamed R, Flint HJ, Duncan SH, Henrissat B, Coutinho P, Morrison M, Mosoni P, Yeoman CJ, White BA, Bayer EA.

PLoS One. 2014 Jul 3;9(7):e99221. doi: 10.1371/journal.pone.0099221. eCollection 2014.


Pregnancy's stronghold on the vaginal microbiome.

Walther-António MR, Jeraldo P, Berg Miller ME, Yeoman CJ, Nelson KE, Wilson BA, White BA, Chia N, Creedon DJ.

PLoS One. 2014 Jun 4;9(6):e98514. doi: 10.1371/journal.pone.0098514. eCollection 2014.


Characterization of the Vaginal Microbiota of Ewes and Cows Reveals a Unique Microbiota with Low Levels of Lactobacilli and Near-Neutral pH.

Swartz JD, Lachman M, Westveer K, O'Neill T, Geary T, Kott RW, Berardinelli JG, Hatfield PG, Thomson JM, Roberts A, Yeoman CJ.

Front Vet Sci. 2014 Oct 15;1:19. doi: 10.3389/fvets.2014.00019. eCollection 2014.


Low incidence of spontaneous type 1 diabetes in non-obese diabetic mice raised on gluten-free diets is associated with changes in the intestinal microbiome.

Marietta EV, Gomez AM, Yeoman C, Tilahun AY, Clark CR, Luckey DH, Murray JA, White BA, Kudva YC, Rajagopalan G.

PLoS One. 2013 Nov 13;8(11):e78687. doi: 10.1371/journal.pone.0078687. eCollection 2013.


The primate vaginal microbiome: comparative context and implications for human health and disease.

Stumpf RM, Wilson BA, Rivera A, Yildirim S, Yeoman CJ, Polk JD, White BA, Leigh SR.

Am J Phys Anthropol. 2013 Dec;152 Suppl 57:119-34. doi: 10.1002/ajpa.22395. Epub 2013 Oct 28. Review.


Alteration of digestive tract microbiome in neonatal Holstein bull calves by bacitracin methylene disalicylate treatment and scours.

Xie G, Duff GC, Hall LW, Allen JD, Burrows CD, Bernal-Rigoli JC, Dowd SE, Guerriero V, Yeoman CJ.

J Anim Sci. 2013 Oct;91(10):4984-90. doi: 10.2527/jas.2013-6304. Epub 2013 Aug 13.


Expression of cellulosome components and type IV pili within the extracellular proteome of Ruminococcus flavefaciens 007.

Vodovnik M, Duncan SH, Reid MD, Cantlay L, Turner K, Parkhill J, Lamed R, Yeoman CJ, Miller ME, White BA, Bayer EA, Marinšek-Logar R, Flint HJ.

PLoS One. 2013 Jun 4;8(6):e65333. doi: 10.1371/journal.pone.0065333. Print 2013.


An update on the clinical pathology of oral precancer and cancer.

Hunter KD, Yeoman CM.

Dent Update. 2013 Mar;40(2):120-2, 125-6. Review.


Habitat degradation impacts black howler monkey (Alouatta pigra) gastrointestinal microbiomes.

Amato KR, Yeoman CJ, Kent A, Righini N, Carbonero F, Estrada A, Gaskins HR, Stumpf RM, Yildirim S, Torralba M, Gillis M, Wilson BA, Nelson KE, White BA, Leigh SR.

ISME J. 2013 Jul;7(7):1344-53. doi: 10.1038/ismej.2013.16. Epub 2013 Mar 14.


A multi-omic systems-based approach reveals metabolic markers of bacterial vaginosis and insight into the disease.

Yeoman CJ, Thomas SM, Miller ME, Ulanov AV, Torralba M, Lucas S, Gillis M, Cregger M, Gomez A, Ho M, Leigh SR, Stumpf R, Creedon DJ, Smith MA, Weisbaum JS, Nelson KE, Wilson BA, White BA.

PLoS One. 2013;8(2):e56111. doi: 10.1371/journal.pone.0056111. Epub 2013 Feb 6.


Modulation of systemic immune responses through commensal gastrointestinal microbiota.

Schachtschneider KM, Yeoman CJ, Isaacson RE, White BA, Schook LB, Pieters M.

PLoS One. 2013;8(1):e53969. doi: 10.1371/journal.pone.0053969. Epub 2013 Jan 11.


The microbiome of the chicken gastrointestinal tract.

Yeoman CJ, Chia N, Jeraldo P, Sipos M, Goldenfeld ND, White BA.

Anim Health Res Rev. 2012 Jun;13(1):89-99. doi: 10.1017/S1466252312000138. Review.


Loss of sex and age driven differences in the gut microbiome characterize arthritis-susceptible 0401 mice but not arthritis-resistant 0402 mice.

Gomez A, Luckey D, Yeoman CJ, Marietta EV, Berg Miller ME, Murray JA, White BA, Taneja V.

PLoS One. 2012;7(4):e36095. doi: 10.1371/journal.pone.0036095. Epub 2012 Apr 24.


Cellulosomics, a gene-centric approach to investigating the intraspecific diversity and adaptation of Ruminococcus flavefaciens within the rumen.

Brulc JM, Yeoman CJ, Wilson MK, Berg Miller ME, Jeraldo P, Jindou S, Goldenfeld N, Flint HJ, Lamed R, Borovok I, Vodovnik M, Nelson KE, Bayer EA, White BA.

PLoS One. 2011;6(10):e25329. doi: 10.1371/journal.pone.0025329. Epub 2011 Oct 17.


Phage-bacteria relationships and CRISPR elements revealed by a metagenomic survey of the rumen microbiome.

Berg Miller ME, Yeoman CJ, Chia N, Tringe SG, Angly FE, Edwards RA, Flint HJ, Lamed R, Bayer EA, White BA.

Environ Microbiol. 2012 Jan;14(1):207-27. doi: 10.1111/j.1462-2920.2011.02593.x. Epub 2011 Oct 17.


Biochemical characterization and relative expression levels of multiple carbohydrate esterases of the xylanolytic rumen bacterium Prevotella ruminicola 23 grown on an ester-enriched substrate.

Kabel MA, Yeoman CJ, Han Y, Dodd D, Abbas CA, de Bont JA, Morrison M, Cann IK, Mackie RI.

Appl Environ Microbiol. 2011 Aug 15;77(16):5671-81. doi: 10.1128/AEM.05321-11. Epub 2011 Jul 8.


The large episomes of Butyrivibrio proteoclasticus B316T have arisen through intragenomic gene shuttling from the chromosome to smaller Butyrivibrio-specific plasmids.

Yeoman CJ, Kelly WJ, Rakonjac J, Leahy SC, Altermann E, Attwood GT.

Plasmid. 2011 Jul;66(2):67-78. doi: 10.1016/j.plasmid.2011.05.002. Epub 2011 Jun 12.


Characterization of the fecal microbiome from non-human wild primates reveals species specific microbial communities.

Yildirim S, Yeoman CJ, Sipos M, Torralba M, Wilson BA, Goldberg TL, Stumpf RM, Leigh SR, White BA, Nelson KE.

PLoS One. 2010 Nov 12;5(11):e13963. doi: 10.1371/journal.pone.0013963.

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