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Items: 1 to 50 of 173

1.

Microfocus diffraction from different regions of a protein crystal: structural variations and unit-cell polymorphism.

Thompson MC, Cascio D, Yeates TO.

Acta Crystallogr D Struct Biol. 2018 May 1;74(Pt 5):411-421. doi: 10.1107/S2059798318003479. Epub 2018 Apr 24.

PMID:
29717712
2.

Near-atomic cryo-EM imaging of a small protein displayed on a designed scaffolding system.

Liu Y, Gonen S, Gonen T, Yeates TO.

Proc Natl Acad Sci U S A. 2018 Mar 27;115(13):3362-3367. doi: 10.1073/pnas.1718825115. Epub 2018 Mar 5.

PMID:
29507202
3.

Putting the RuBisCO pieces together.

Yeates TO, Wheatley NM.

Science. 2017 Dec 8;358(6368):1253-1254. doi: 10.1126/science.aar3107. No abstract available.

PMID:
29217555
4.

Facile methods for heterologous production of bacterial microcompartments in diverse host species.

Yeates TO, Bobik TA.

Microb Biotechnol. 2018 Jan;11(1):160-162. doi: 10.1111/1751-7915.12869. Epub 2017 Dec 4. No abstract available.

5.

Molecular Dynamics Simulations of Selective Metabolite Transport across the Propanediol Bacterial Microcompartment Shell.

Park J, Chun S, Bobik TA, Houk KN, Yeates TO.

J Phys Chem B. 2017 Aug 31;121(34):8149-8154. doi: 10.1021/acs.jpcb.7b07232. Epub 2017 Aug 22.

6.

Geometric Principles for Designing Highly Symmetric Self-Assembling Protein Nanomaterials.

Yeates TO.

Annu Rev Biophys. 2017 May 22;46:23-42. doi: 10.1146/annurev-biophys-070816-033928. Epub 2017 Feb 23. Review.

PMID:
28301774
7.

Designing and defining dynamic protein cage nanoassemblies in solution.

Lai YT, Hura GL, Dyer KN, Tang HY, Tainer JA, Yeates TO.

Sci Adv. 2016 Dec 14;2(12):e1501855. eCollection 2016 Dec.

8.

The function of the PduJ microcompartment shell protein is determined by the genomic position of its encoding gene.

Chowdhury C, Chun S, Sawaya MR, Yeates TO, Bobik TA.

Mol Microbiol. 2016 Sep;101(5):770-83. doi: 10.1111/mmi.13423. Epub 2016 Jun 7.

9.

The design of symmetric protein nanomaterials comes of age in theory and practice.

Yeates TO, Liu Y, Laniado J.

Curr Opin Struct Biol. 2016 Aug;39:134-143. doi: 10.1016/j.sbi.2016.07.003. Epub 2016 Jul 29. Review.

PMID:
27476148
10.

A PII-Like Protein Regulated by Bicarbonate: Structural and Biochemical Studies of the Carboxysome-Associated CPII Protein.

Wheatley NM, Eden KD, Ngo J, Rosinski JS, Sawaya MR, Cascio D, Collazo M, Hoveida H, Hubbell WL, Yeates TO.

J Mol Biol. 2016 Oct 9;428(20):4013-4030. doi: 10.1016/j.jmb.2016.07.015. Epub 2016 Jul 25.

11.

Accurate design of megadalton-scale two-component icosahedral protein complexes.

Bale JB, Gonen S, Liu Y, Sheffler W, Ellis D, Thomas C, Cascio D, Yeates TO, Gonen T, King NP, Baker D.

Science. 2016 Jul 22;353(6297):389-94. doi: 10.1126/science.aaf8818.

12.

Structure of a novel 13 nm dodecahedral nanocage assembled from a redesigned bacterial microcompartment shell protein.

Jorda J, Leibly DJ, Thompson MC, Yeates TO.

Chem Commun (Camb). 2016 Apr 11;52(28):5041-4. doi: 10.1039/c6cc00851h. Epub 2016 Mar 18.

13.

Progress in low-resolution ab initio phasing with CrowdPhase.

Jorda J, Sawaya MR, Yeates TO.

Acta Crystallogr D Struct Biol. 2016 Mar;72(Pt 3):446-53. doi: 10.1107/S2059798316003405. Epub 2016 Mar 1.

14.

Responses to Crystallography and chemistry should always go together: a cautionary tale of protein complexes with cisplatin and carboplatin.

Yeates TO.

Acta Crystallogr D Biol Crystallogr. 2015 Sep;71(Pt 9):1980-1. doi: 10.1107/S1399004715014704. Epub 2015 Aug 28. No abstract available.

PMID:
26327387
15.

A Suite of Engineered GFP Molecules for Oligomeric Scaffolding.

Leibly DJ, Arbing MA, Pashkov I, DeVore N, Waldo GS, Terwilliger TC, Yeates TO.

Structure. 2015 Sep 1;23(9):1754-1768. doi: 10.1016/j.str.2015.07.008. Epub 2015 Aug 13.

16.

On the predictability of the orientation of protein domains joined by a spanning alpha-helical linker.

Lai YT, Jiang L, Chen W, Yeates TO.

Protein Eng Des Sel. 2015 Nov;28(11):491-9. doi: 10.1093/protein/gzv035. Epub 2015 Aug 4.

PMID:
26243886
17.

Diffusion accessibility as a method for visualizing macromolecular surface geometry.

Tsai Y, Holton T, Yeates TO.

Protein Sci. 2015 Oct;24(10):1702-5. doi: 10.1002/pro.2752. Epub 2015 Aug 6.

18.

Structure of a designed tetrahedral protein assembly variant engineered to have improved soluble expression.

Bale JB, Park RU, Liu Y, Gonen S, Gonen T, Cascio D, King NP, Yeates TO, Baker D.

Protein Sci. 2015 Oct;24(10):1695-701. doi: 10.1002/pro.2748. Epub 2015 Aug 6.

19.

Bacterial microcompartments: widespread prokaryotic organelles for isolation and optimization of metabolic pathways.

Bobik TA, Lehman BP, Yeates TO.

Mol Microbiol. 2015 Oct;98(2):193-207. doi: 10.1111/mmi.13117. Epub 2015 Aug 3. Review.

20.

Redesigning photosynthesis to sustainably meet global food and bioenergy demand.

Ort DR, Merchant SS, Alric J, Barkan A, Blankenship RE, Bock R, Croce R, Hanson MR, Hibberd JM, Long SP, Moore TA, Moroney J, Niyogi KK, Parry MA, Peralta-Yahya PP, Prince RC, Redding KE, Spalding MH, van Wijk KJ, Vermaas WF, von Caemmerer S, Weber AP, Yeates TO, Yuan JS, Zhu XG.

Proc Natl Acad Sci U S A. 2015 Jul 14;112(28):8529-36. doi: 10.1073/pnas.1424031112. Epub 2015 Jun 29.

21.

Structures of potent anticancer compounds bound to tubulin.

McNamara DE, Senese S, Yeates TO, Torres JZ.

Protein Sci. 2015 Jul;24(7):1164-72. doi: 10.1002/pro.2704. Epub 2015 May 27.

22.

The PduL Phosphotransacylase Is Used To Recycle Coenzyme A within the Pdu Microcompartment.

Liu Y, Jorda J, Yeates TO, Bobik TA.

J Bacteriol. 2015 Jul;197(14):2392-9. doi: 10.1128/JB.00056-15. Epub 2015 May 11.

23.

An allosteric model for control of pore opening by substrate binding in the EutL microcompartment shell protein.

Thompson MC, Cascio D, Leibly DJ, Yeates TO.

Protein Sci. 2015 Jun;24(6):956-75. doi: 10.1002/pro.2672. Epub 2015 Mar 31.

24.

Selective molecular transport through the protein shell of a bacterial microcompartment organelle.

Chowdhury C, Chun S, Pang A, Sawaya MR, Sinha S, Yeates TO, Bobik TA.

Proc Natl Acad Sci U S A. 2015 Mar 10;112(10):2990-5. doi: 10.1073/pnas.1423672112. Epub 2015 Feb 23.

25.

Exploring bacterial organelle interactomes: a model of the protein-protein interaction network in the Pdu microcompartment.

Jorda J, Liu Y, Bobik TA, Yeates TO.

PLoS Comput Biol. 2015 Feb 3;11(2):e1004067. doi: 10.1371/journal.pcbi.1004067. eCollection 2015 Feb.

26.

Structure of a bacterial microcompartment shell protein bound to a cobalamin cofactor.

Thompson MC, Crowley CS, Kopstein J, Bobik TA, Yeates TO.

Acta Crystallogr F Struct Biol Commun. 2014 Dec 1;70(Pt 12):1584-90. doi: 10.1107/S2053230X1402158X. Epub 2014 Nov 14.

27.

Structure of a designed protein cage that self-assembles into a highly porous cube.

Lai YT, Reading E, Hura GL, Tsai KL, Laganowsky A, Asturias FJ, Tainer JA, Robinson CV, Yeates TO.

Nat Chem. 2014 Dec;6(12):1065-71. doi: 10.1038/nchem.2107. Epub 2014 Nov 10.

28.

Structure of the methanofuran/methanopterin-biosynthetic enzyme MJ1099 from Methanocaldococcus jannaschii.

Bobik TA, Morales EJ, Shin A, Cascio D, Sawaya MR, Arbing M, Yeates TO, Rasche ME.

Acta Crystallogr F Struct Biol Commun. 2014 Nov;70(Pt 11):1472-9. doi: 10.1107/S2053230X1402130X. Epub 2014 Oct 25.

29.

Diverse bacterial microcompartment organelles.

Chowdhury C, Sinha S, Chun S, Yeates TO, Bobik TA.

Microbiol Mol Biol Rev. 2014 Sep;78(3):438-68. doi: 10.1128/MMBR.00009-14. Review.

30.

Identification of a unique Fe-S cluster binding site in a glycyl-radical type microcompartment shell protein.

Thompson MC, Wheatley NM, Jorda J, Sawaya MR, Gidaniyan SD, Ahmed H, Yang Z, McCarty KN, Whitelegge JP, Yeates TO.

J Mol Biol. 2014 Sep 23;426(19):3287-3304. doi: 10.1016/j.jmb.2014.07.018. Epub 2014 Aug 4.

31.

CrowdPhase: crowdsourcing the phase problem.

Jorda J, Sawaya MR, Yeates TO.

Acta Crystallogr D Biol Crystallogr. 2014 Jun;70(Pt 6):1538-48. doi: 10.1107/S1399004714006427. Epub 2014 May 23.

32.

Accurate design of co-assembling multi-component protein nanomaterials.

King NP, Bale JB, Sheffler W, McNamara DE, Gonen S, Gonen T, Yeates TO, Baker D.

Nature. 2014 Jun 5;510(7503):103-8. doi: 10.1038/nature13404. Epub 2014 May 25.

33.

Alanine scanning mutagenesis identifies an asparagine-arginine-lysine triad essential to assembly of the shell of the Pdu microcompartment.

Sinha S, Cheng S, Sung YW, McNamara DE, Sawaya MR, Yeates TO, Bobik TA.

J Mol Biol. 2014 Jun 12;426(12):2328-45. doi: 10.1016/j.jmb.2014.04.012. Epub 2014 Apr 18.

34.

The role of distant mutations and allosteric regulation on LovD active site dynamics.

Jiménez-Osés G, Osuna S, Gao X, Sawaya MR, Gilson L, Collier SJ, Huisman GW, Yeates TO, Tang Y, Houk KN.

Nat Chem Biol. 2014 Jun;10(6):431-6. doi: 10.1038/nchembio.1503. Epub 2014 Apr 13.

35.

(Quasi-)racemic X-ray structures of glycosylated and non-glycosylated forms of the chemokine Ser-CCL1 prepared by total chemical synthesis.

Okamoto R, Mandal K, Sawaya MR, Kajihara Y, Yeates TO, Kent SB.

Angew Chem Int Ed Engl. 2014 May 12;53(20):5194-8. doi: 10.1002/anie.201400679. Epub 2014 Apr 1.

PMID:
24692304
36.

Structure of dihydromethanopterin reductase, a cubic protein cage for redox transfer.

McNamara DE, Cascio D, Jorda J, Bustos C, Wang TC, Rasche ME, Yeates TO, Bobik TA.

J Biol Chem. 2014 Mar 28;289(13):8852-64. doi: 10.1074/jbc.M113.522342. Epub 2014 Feb 12.

37.

Structure and identification of a pterin dehydratase-like protein as a ribulose-bisphosphate carboxylase/oxygenase (RuBisCO) assembly factor in the α-carboxysome.

Wheatley NM, Sundberg CD, Gidaniyan SD, Cascio D, Yeates TO.

J Biol Chem. 2014 Mar 14;289(11):7973-81. doi: 10.1074/jbc.M113.531236. Epub 2014 Jan 23.

38.

A challenging interpretation of a hexagonally layered protein structure.

Thompson MC, Yeates TO.

Acta Crystallogr D Biol Crystallogr. 2014 Jan;70(Pt 1):203-8. doi: 10.1107/S139900471302422X. Epub 2013 Dec 24.

39.

Split green fluorescent protein as a modular binding partner for protein crystallization.

Nguyen HB, Hung LW, Yeates TO, Terwilliger TC, Waldo GS.

Acta Crystallogr D Biol Crystallogr. 2013 Dec;69(Pt 12):2513-23. doi: 10.1107/S0907444913024608. Epub 2013 Nov 19.

40.

The shells of BMC-type microcompartment organelles in bacteria.

Yeates TO, Jorda J, Bobik TA.

J Mol Microbiol Biotechnol. 2013;23(4-5):290-9. doi: 10.1159/000351347. Epub 2013 Aug 5. Review.

41.

Structure and flexibility of nanoscale protein cages designed by symmetric self-assembly.

Lai YT, Tsai KL, Sawaya MR, Asturias FJ, Yeates TO.

J Am Chem Soc. 2013 May 22;135(20):7738-43. doi: 10.1021/ja402277f. Epub 2013 May 8.

42.

Bacterial microcompartment shells of diverse functional types possess pentameric vertex proteins.

Wheatley NM, Gidaniyan SD, Liu Y, Cascio D, Yeates TO.

Protein Sci. 2013 May;22(5):660-5. doi: 10.1002/pro.2246. Epub 2013 Apr 8.

43.

Using comparative genomics to uncover new kinds of protein-based metabolic organelles in bacteria.

Jorda J, Lopez D, Wheatley NM, Yeates TO.

Protein Sci. 2013 Feb;22(2):179-95. doi: 10.1002/pro.2196. Epub 2013 Jan 4.

44.

Principles for designing ordered protein assemblies.

Lai YT, King NP, Yeates TO.

Trends Cell Biol. 2012 Dec;22(12):653-61. doi: 10.1016/j.tcb.2012.08.004. Epub 2012 Sep 10. Review.

PMID:
22975357
45.

Computational design of self-assembling protein nanomaterials with atomic level accuracy.

King NP, Sheffler W, Sawaya MR, Vollmar BS, Sumida JP, André I, Gonen T, Yeates TO, Baker D.

Science. 2012 Jun 1;336(6085):1171-4. doi: 10.1126/science.1219364.

46.

Structure of a 16-nm cage designed by using protein oligomers.

Lai YT, Cascio D, Yeates TO.

Science. 2012 Jun 1;336(6085):1129. doi: 10.1126/science.1219351.

47.

Structure and function in complex macromolecular assemblies: some evolutionary themes.

Jones EY, Yeates TO.

Curr Opin Struct Biol. 2012 Apr;22(2):197-9. doi: 10.1016/j.sbi.2012.03.003. Epub 2012 Mar 21. No abstract available.

PMID:
22444564
48.

Racemic protein crystallography.

Yeates TO, Kent SB.

Annu Rev Biophys. 2012;41:41-61. doi: 10.1146/annurev-biophys-050511-102333. Epub 2012 Mar 14. Review.

PMID:
22443988
49.

Single-wavelength phasing strategy for quasi-racemic protein crystal diffraction data.

Sawaya MR, Pentelute BL, Kent SB, Yeates TO.

Acta Crystallogr D Biol Crystallogr. 2012 Jan;68(Pt 1):62-8. doi: 10.1107/S0907444911049985. Epub 2011 Dec 9.

PMID:
22194334
50.

Inward facing conformations of the MetNI methionine ABC transporter: Implications for the mechanism of transinhibition.

Johnson E, Nguyen PT, Yeates TO, Rees DC.

Protein Sci. 2012 Jan;21(1):84-96. doi: 10.1002/pro.765. Epub 2011 Dec 5.

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