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Items: 1 to 50 of 56

1.

Quantitative analysis of ATM phosphorylation in lymphocytes.

Bakkenist CJ, Czambel RK, Lin Y, Yates NA, Zeng X, Shogan J, Schmitz JC.

DNA Repair (Amst). 2019 Aug;80:1-7. doi: 10.1016/j.dnarep.2019.06.002. Epub 2019 Jun 4.

PMID:
31176958
2.

Measuring biological age in mice using differential mass spectrometry.

Bell-Temin H, Yousefzadeh MJ, Bondarenko A, Quarles E, Jones-Laughner J, Robbins PD, Ladiges W, Niedernhofer LJ, Yates NA.

Aging (Albany NY). 2019 Feb 11;11(3):1045-1061. doi: 10.18632/aging.101810.

3.

The N-cadherin interactome in primary cardiomyocytes as defined using quantitative proximity proteomics.

Li Y, Merkel CD, Zeng X, Heier JA, Cantrell PS, Sun M, Stolz DB, Watkins SC, Yates NA, Kwiatkowski AV.

J Cell Sci. 2019 Feb 11;132(3). pii: jcs221606. doi: 10.1242/jcs.221606.

4.

Synaptic Proteome Compensation and Resilience to Psychosis in Alzheimer's Disease.

Krivinko JM, Erickson SL, Ding Y, Sun Z, Penzes P, MacDonald ML, Yates NA, Ikonomovic MD, Lopez OL, Sweet RA, Kofler J.

Am J Psychiatry. 2018 Oct 1;175(10):999-1009. doi: 10.1176/appi.ajp.2018.17080858. Epub 2018 Jul 19.

5.

Spontaneous DNA damage to the nuclear genome promotes senescence, redox imbalance and aging.

Robinson AR, Yousefzadeh MJ, Rozgaja TA, Wang J, Li X, Tilstra JS, Feldman CH, Gregg SQ, Johnson CH, Skoda EM, Frantz MC, Bell-Temin H, Pope-Varsalona H, Gurkar AU, Nasto LA, Robinson RAS, Fuhrmann-Stroissnigg H, Czerwinska J, McGowan SJ, Cantu-Medellin N, Harris JB, Maniar S, Ross MA, Trussoni CE, LaRusso NF, Cifuentes-Pagano E, Pagano PJ, Tudek B, Vo NV, Rigatti LH, Opresko PL, Stolz DB, Watkins SC, Burd CE, Croix CMS, Siuzdak G, Yates NA, Robbins PD, Wang Y, Wipf P, Kelley EE, Niedernhofer LJ.

Redox Biol. 2018 Jul;17:259-273. doi: 10.1016/j.redox.2018.04.007. Epub 2018 Apr 13.

6.

How many human proteoforms are there?

Aebersold R, Agar JN, Amster IJ, Baker MS, Bertozzi CR, Boja ES, Costello CE, Cravatt BF, Fenselau C, Garcia BA, Ge Y, Gunawardena J, Hendrickson RC, Hergenrother PJ, Huber CG, Ivanov AR, Jensen ON, Jewett MC, Kelleher NL, Kiessling LL, Krogan NJ, Larsen MR, Loo JA, Ogorzalek Loo RR, Lundberg E, MacCoss MJ, Mallick P, Mootha VK, Mrksich M, Muir TW, Patrie SM, Pesavento JJ, Pitteri SJ, Rodriguez H, Saghatelian A, Sandoval W, Schlüter H, Sechi S, Slavoff SA, Smith LM, Snyder MP, Thomas PM, Uhlén M, Van Eyk JE, Vidal M, Walt DR, White FM, Williams ER, Wohlschlager T, Wysocki VH, Yates NA, Young NL, Zhang B.

Nat Chem Biol. 2018 Feb 14;14(3):206-214. doi: 10.1038/nchembio.2576.

7.

A human APOC3 missense variant and monoclonal antibody accelerate apoC-III clearance and lower triglyceride-rich lipoprotein levels.

Khetarpal SA, Zeng X, Millar JS, Vitali C, Somasundara AVH, Zanoni P, Landro JA, Barucci N, Zavadoski WJ, Sun Z, de Haard H, Toth IV, Peloso GM, Natarajan P, Cuchel M, Lund-Katz S, Phillips MC, Tall AR, Kathiresan S, DaSilva-Jardine P, Yates NA, Rader DJ.

Nat Med. 2017 Sep;23(9):1086-1094. doi: 10.1038/nm.4390. Epub 2017 Aug 21.

8.

Nek7 Protects Telomeres from Oxidative DNA Damage by Phosphorylation and Stabilization of TRF1.

Tan R, Nakajima S, Wang Q, Sun H, Xue J, Wu J, Hellwig S, Zeng X, Yates NA, Smithgall TE, Lei M, Jiang Y, Levine AS, Su B, Lan L.

Mol Cell. 2017 Mar 2;65(5):818-831.e5. doi: 10.1016/j.molcel.2017.01.015. Epub 2017 Feb 16.

9.

Decellularized zebrafish cardiac extracellular matrix induces mammalian heart regeneration.

Chen WC, Wang Z, Missinato MA, Park DW, Long DW, Liu HJ, Zeng X, Yates NA, Kim K, Wang Y.

Sci Adv. 2016 Nov 18;2(11):e1600844. doi: 10.1126/sciadv.1600844. eCollection 2016 Nov.

10.

UBE3B Is a Calmodulin-regulated, Mitochondrion-associated E3 Ubiquitin Ligase.

Braganza A, Li J, Zeng X, Yates NA, Dey NB, Andrews J, Clark J, Zamani L, Wang XH, St Croix C, O'Sullivan R, Garcia-Exposito L, Brodsky JL, Sobol RW.

J Biol Chem. 2017 Feb 10;292(6):2470-2484. doi: 10.1074/jbc.M116.766824. Epub 2016 Dec 21.

11.

Abnormal lipid processing but normal long-term repopulation potential of myc-/- hepatocytes.

Edmunds LR, Otero PA, Sharma L, D'Souza S, Dolezal JM, David S, Lu J, Lamm L, Basantani M, Zhang P, Sipula IJ, Li L, Zeng X, Ding Y, Ding F, Beck ME, Vockley J, Monga SP, Kershaw EE, O'Doherty RM, Kratz LE, Yates NA, Goetzman EP, Scott D, Duncan AW, Prochownik EV.

Oncotarget. 2016 May 24;7(21):30379-95. doi: 10.18632/oncotarget.8856.

12.

Apolipoprotein E*4 (APOE*4) Genotype Is Associated with Altered Levels of Glutamate Signaling Proteins and Synaptic Coexpression Networks in the Prefrontal Cortex in Mild to Moderate Alzheimer Disease.

Sweet RA, MacDonald ML, Kirkwood CM, Ding Y, Schempf T, Jones-Laughner J, Kofler J, Ikonomovic MD, Lopez OL, Garver ME, Fitz NF, Koldamova R, Yates NA.

Mol Cell Proteomics. 2016 Jul;15(7):2252-62. doi: 10.1074/mcp.M115.056580. Epub 2016 Apr 21.

13.

Altered Levels of Visinin-Like Protein 1 Correspond to Regional Neuronal Loss in Alzheimer Disease and Frontotemporal Lobar Degeneration.

Kirkwood CM, MacDonald ML, Schempf TA, Vatsavayi AV, Ikonomovic MD, Koppel JL, Ding Y, Sun M, Kofler JK, Lopez OL, Yates NA, Sweet RA.

J Neuropathol Exp Neurol. 2016 Feb;75(2):175-82.

14.

High Resolution Discovery Proteomics Reveals Candidate Disease Progression Markers of Alzheimer's Disease in Human Cerebrospinal Fluid.

Hendrickson RC, Lee AY, Song Q, Liaw A, Wiener M, Paweletz CP, Seeburger JL, Li J, Meng F, Deyanova EG, Mazur MT, Settlage RE, Zhao X, Southwick K, Du Y, Holder D, Sachs JR, Laterza OF, Dallob A, Chappell DL, Snyder K, Modur V, King E, Joachim C, Bondarenko AY, Shearman M, Soper KA, Smith AD, Potter WZ, Koblan KS, Sachs AB, Yates NA.

PLoS One. 2015 Aug 13;10(8):e0135365. doi: 10.1371/journal.pone.0135365. eCollection 2015.

15.

Altered glutamate protein co-expression network topology linked to spine loss in the auditory cortex of schizophrenia.

MacDonald ML, Ding Y, Newman J, Hemby S, Penzes P, Lewis DA, Yates NA, Sweet RA.

Biol Psychiatry. 2015 Jun 1;77(11):959-68. doi: 10.1016/j.biopsych.2014.09.006. Epub 2014 Nov 26.

16.

HSP90 regulates DNA repair via the interaction between XRCC1 and DNA polymerase β.

Fang Q, Inanc B, Schamus S, Wang XH, Wei L, Brown AR, Svilar D, Sugrue KF, Goellner EM, Zeng X, Yates NA, Lan L, Vens C, Sobol RW.

Nat Commun. 2014 Nov 26;5:5513. doi: 10.1038/ncomms6513.

17.

Isolation of serpin-interacting proteins in C. elegans using protein affinity purification.

Miedel MT, Zeng X, Yates NA, Silverman GA, Luke CJ.

Methods. 2014 Aug 1;68(3):536-41. doi: 10.1016/j.ymeth.2014.04.019. Epub 2014 May 2.

18.

A systematic review of the quality of economic models comparing thrombosis inhibitors in patients with acute coronary syndrome undergoing percutaneous coronary intervention.

Hatz MH, Leidl R, Yates NA, Stollenwerk B.

Pharmacoeconomics. 2014 Apr;32(4):377-93. doi: 10.1007/s40273-013-0128-4. Review.

PMID:
24504849
19.

Quantification of intact and truncated stromal cell-derived factor-1α in circulation by immunoaffinity enrichment and tandem mass spectrometry.

Wang W, Choi BK, Li W, Lao Z, Lee AY, Souza SC, Yates NA, Kowalski T, Pocai A, Cohen LH.

J Am Soc Mass Spectrom. 2014 Apr;25(4):614-25. doi: 10.1007/s13361-013-0822-7. Epub 2014 Feb 6.

PMID:
24500701
20.

An ultrasensitive method for the quantitation of active and inactive GLP-1 in human plasma via immunoaffinity LC-MS/MS.

Chappell DL, Lee AY, Castro-Perez J, Zhou H, Roddy TP, Lassman ME, Shankar SS, Yates NA, Wang W, Laterza OF.

Bioanalysis. 2014 Jan;6(1):33-42. doi: 10.4155/bio.13.280.

PMID:
24341493
21.

Growth arrest by the antitumor steroidal lactone withaferin A in human breast cancer cells is associated with down-regulation and covalent binding at cysteine 303 of β-tubulin.

Antony ML, Lee J, Hahm ER, Kim SH, Marcus AI, Kumari V, Ji X, Yang Z, Vowell CL, Wipf P, Uechi GT, Yates NA, Romero G, Sarkar SN, Singh SV.

J Biol Chem. 2014 Jan 17;289(3):1852-65. doi: 10.1074/jbc.M113.496844. Epub 2013 Dec 2.

22.

Lysine 63-linked polyubiquitination is required for EGF receptor degradation.

Huang F, Zeng X, Kim W, Balasubramani M, Fortian A, Gygi SP, Yates NA, Sorkin A.

Proc Natl Acad Sci U S A. 2013 Sep 24;110(39):15722-7. doi: 10.1073/pnas.1308014110. Epub 2013 Sep 9.

23.

Quantification of circulating D-dimer by peptide immunoaffinity enrichment and tandem mass spectrometry.

Wang W, Walker ND, Zhu LJ, Wu W, Ge L, Gutstein DE, Yates NA, Hendrickson RC, Ogletree ML, Cleary M, Opiteck GJ, Chen Z.

Anal Chem. 2012 Aug 7;84(15):6891-8. doi: 10.1021/ac301494d. Epub 2012 Jul 19.

PMID:
22788854
24.

Measuring H(2)(18)O tracer incorporation on a QQQ-MS platform provides a rapid, transferable screening tool for relative protein synthesis.

Conway JP, Johns DG, Wang SP, Walker ND, McAvoy TA, Zhou H, Zhao X, Previs SF, Roddy TP, Hubbard BK, Yates NA, Hendrickson RC.

J Proteome Res. 2012 Mar 2;11(3):1591-7. doi: 10.1021/pr2007494. Epub 2012 Feb 10.

PMID:
22289114
25.

Measurement of fractional synthetic rates of multiple protein analytes by triple quadrupole mass spectrometry.

Lee AY, Yates NA, Ichetovkin M, Deyanova E, Southwick K, Fisher TS, Wang W, Loderstedt J, Walker N, Zhou H, Zhao X, Sparrow CP, Hubbard BK, Rader DJ, Sitlani A, Millar JS, Hendrickson RC.

Clin Chem. 2012 Mar;58(3):619-27. doi: 10.1373/clinchem.2011.172429. Epub 2012 Jan 16.

26.

Evaluation of early biomarkers of muscle anabolic response to testosterone.

Chen F, Lam R, Shaywitz D, Hendrickson RC, Opiteck GJ, Wishengrad D, Liaw A, Song Q, Stewart AJ, Cummings CE, Beals C, Yarasheski KE, Reicin A, Ruddy M, Hu X, Yates NA, Menetski J, Herman GA.

J Cachexia Sarcopenia Muscle. 2011 Mar;2(1):45-56. Epub 2011 Feb 26.

27.

ABRF-PRG07: advanced quantitative proteomics study.

Falick AM, Lane WS, Lilley KS, MacCoss MJ, Phinney BS, Sherman NE, Weintraub ST, Witkowska HE, Yates NA.

J Biomol Tech. 2011 Apr;22(1):21-6.

28.

The ABRF Proteomics Research Group studies: educational exercises for qualitative and quantitative proteomic analyses.

Friedman DB, Andacht TM, Bunger MK, Chien AS, Hawke DH, Krijgsveld J, Lane WS, Lilley KS, MacCoss MJ, Moritz RL, Settlage RE, Sherman NE, Weintraub ST, Witkowska HE, Yates NA, Turck CW.

Proteomics. 2011 Apr;11(8):1371-81. doi: 10.1002/pmic.201000736. Epub 2011 Mar 11.

PMID:
21394914
29.

Peptidomic profiling of human cerebrospinal fluid identifies YPRPIHPA as a novel substrate for prolylcarboxypeptidase.

Zhao X, Southwick K, Cardasis HL, Du Y, Lassman ME, Xie D, El-Sherbeini M, Geissler WM, Pryor KD, Verras A, Garcia-Calvo M, Shen DM, Yates NA, Pinto S, Hendrickon RC.

Proteomics. 2010 Aug;10(15):2882-6. doi: 10.1002/pmic.201000145.

PMID:
20517885
30.

Quantitative analysis of intact apolipoproteins in human HDL by top-down differential mass spectrometry.

Mazur MT, Cardasis HL, Spellman DS, Liaw A, Yates NA, Hendrickson RC.

Proc Natl Acad Sci U S A. 2010 Apr 27;107(17):7728-33. doi: 10.1073/pnas.0910776107. Epub 2010 Apr 13.

31.

Application of an end-to-end biomarker discovery platform to identify target engagement markers in cerebrospinal fluid by high resolution differential mass spectrometry.

Paweletz CP, Wiener MC, Bondarenko AY, Yates NA, Song Q, Liaw A, Lee AY, Hunt BT, Henle ES, Meng F, Sleph HF, Holahan M, Sankaranarayanan S, Simon AJ, Settlage RE, Sachs JR, Shearman M, Sachs AB, Cook JJ, Hendrickson RC.

J Proteome Res. 2010 Mar 5;9(3):1392-401. doi: 10.1021/pr900925d.

PMID:
20095649
32.

Potential biomarkers of muscle injury after eccentric exercise.

Sietsema KE, Meng F, Yates NA, Hendrickson RC, Liaw A, Song Q, Brass EP, Ulrich RG.

Biomarkers. 2010 May;15(3):249-58. doi: 10.3109/13547500903502802.

PMID:
20028270
33.

Quantitative analysis of histone deacetylase-1 selective histone modifications by differential mass spectrometry.

Lee AY, Paweletz CP, Pollock RM, Settlage RE, Cruz JC, Secrist JP, Miller TA, Stanton MG, Kral AM, Ozerova ND, Meng F, Yates NA, Richon V, Hendrickson RC.

J Proteome Res. 2008 Dec;7(12):5177-86. doi: 10.1021/pr800510p.

PMID:
19367703
34.

Differential mass spectrometry of rat plasma reveals proteins that are responsive to 17beta-estradiol and a selective estrogen receptor modulator PPT.

Zhao X, Deyanova EG, Lubbers LS, Zafian P, Li JJ, Liaw A, Song Q, Du Y, Settlage RE, Hickey GJ, Yates NA, Hendrickson RC.

J Proteome Res. 2008 Oct;7(10):4373-83. doi: 10.1021/pr800309z. Epub 2008 Sep 12.

PMID:
18785765
35.

Whole genome searching with shotgun proteomic data: applications for genome annotation.

Sevinsky JR, Cargile BJ, Bunger MK, Meng F, Yates NA, Hendrickson RC, Stephenson JL Jr.

J Proteome Res. 2008 Jan;7(1):80-8. Epub 2007 Dec 7.

PMID:
18062665
36.

The Association of Biomolecular Resource Facilities Proteomics Research Group 2006 study: relative protein quantitation.

Turck CW, Falick AM, Kowalak JA, Lane WS, Lilley KS, Phinney BS, Weintraub ST, Witkowska HE, Yates NA; Association of Biomolecula Resource Facilities Proteomics Research Group.

Mol Cell Proteomics. 2007 Aug;6(8):1291-8. Epub 2007 May 18.

37.

Detection and validation of non-synonymous coding SNPs from orthogonal analysis of shotgun proteomics data.

Bunger MK, Cargile BJ, Sevinsky JR, Deyanova E, Yates NA, Hendrickson RC, Stephenson JL Jr.

J Proteome Res. 2007 Jun;6(6):2331-40. Epub 2007 May 9.

PMID:
17488105
38.

Quantitative analysis of complex peptide mixtures using FTMS and differential mass spectrometry.

Meng F, Wiener MC, Sachs JR, Burns C, Verma P, Paweletz CP, Mazur MT, Deyanova EG, Yates NA, Hendrickson RC.

J Am Soc Mass Spectrom. 2007 Feb;18(2):226-33. Epub 2006 Oct 25.

39.

Surface enhanced laser desorption ionization spectrometry reveals biomarkers for drug treatment but not dose.

Paweletz CP, Wiener MC, Sachs JR, Meurer R, Wu MS, Wong KK, Yates NA, Hendrickson RC.

Proteomics. 2006 Apr;6(7):2101-7.

PMID:
16518871
40.
41.
42.

Natriuresis and inhibition of Na+/K(+)-ATPase: modulation of response by physiological manipulation.

McDougall JG, Yates NA.

Clin Exp Pharmacol Physiol Suppl. 1998 Nov;25:S57-60. Review.

PMID:
9809194
43.

Interaction of exogenous ouabain and chronic mineralocorticoid treatment in the kidney of the conscious sheep.

Yates NA, McDougall JG.

Clin Exp Pharmacol Physiol. 1997 Jan;24(1):57-63.

PMID:
9043806
44.

Dendrimer-supported combinatorial chemistry.

Kim RM, Manna M, Hutchins SM, Griffin PR, Yates NA, Bernick AM, Chapman KT.

Proc Natl Acad Sci U S A. 1996 Sep 17;93(19):10012-7.

45.

Where the national research dollar goes. Allocation of NHMRC resources to clinical categories, 1989-1995. National Health and Medical Research Council of Australia.

Giusti WL, Yates NA, McDougall G.

Med J Aust. 1995 Dec 4-18;163(11-12):607-8. No abstract available. Erratum in: Med J Aust 1996 May 6;164(9):532.

PMID:
8538555
46.

Effect of volume expansion on the natriuretic response to ouabain infusion.

Yates NA, McDougall JG.

Ren Physiol Biochem. 1995 Nov-Dec;18(6):311-20.

PMID:
8711269
47.
48.

Differential blockade of the renal vasoconstrictor and diuretic responses to endothelin-1 by endothelin antagonist.

Kamphuis C, Yates NA, McDougall JG.

Clin Exp Pharmacol Physiol. 1994 Apr;21(4):329-33.

PMID:
7923901
49.
50.

The effect of hypovolemia on the renal and cardiovascular responses to atrial natriuretic factor (ANF) infusion.

Yates NA, Parkes DG, Coghlan JP, Scoggins BA, McDougall JG.

Life Sci. 1992;50(24):1905-12.

PMID:
1534598

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