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Items: 1 to 50 of 1073

1.

Quantitative In Vivo Proteomics of Metformin Response in Liver Reveals AMPK-Dependent and -Independent Signaling Networks.

Stein BD, Calzolari D, Hellberg K, Hu YS, He L, Hung CM, Toyama EQ, Ross DS, Lillemeier BF, Cantley LC, Yates JR 3rd, Shaw RJ.

Cell Rep. 2019 Dec 3;29(10):3331-3348.e7. doi: 10.1016/j.celrep.2019.10.117.

2.

The KLDpT activation loop motif is critical for MARK kinase activity.

Sonntag T, Moresco JJ, Yates JR 3rd, Montminy M.

PLoS One. 2019 Dec 3;14(12):e0225727. doi: 10.1371/journal.pone.0225727. eCollection 2019.

3.

Response to "Comment on 'Regularized SCAN functional'" [J. Chem. Phys. 151, 207101 (2019)].

Bartók AP, Yates JR.

J Chem Phys. 2019 Nov 28;151(20):207102. doi: 10.1063/1.5128484. No abstract available.

PMID:
31779330
4.

Integrative proteomics and pharmacogenomics analysis of methylphenidate treatment response.

da Silva BS, Leffa DT, Beys-da-Silva WO, Torres ILS, Rovaris DL, Victor MM, Rohde LA, Mota NR, Oliveira C, Berger M, Yates JR 3rd, Sabnis R, Peña RD, Campos AR, Grevet EH, Santi L, Bau CHD, Contini V.

Transl Psychiatry. 2019 Nov 18;9(1):308. doi: 10.1038/s41398-019-0649-5.

5.

Function of the MYND domain and C-terminal region in regulating the subcellular localization and catalytic activity of the SMYD family lysine methyltransferase Set5.

Jaiswal D, Turniansky R, Moresco JJ, Ikram S, Ramaprasad G, Akinwole A, Wolf J, Yates JR 3rd, Green EM.

Mol Cell Biol. 2019 Nov 4. pii: MCB.00341-19. doi: 10.1128/MCB.00341-19. [Epub ahead of print]

PMID:
31685550
6.

Wannier90 as a community code: new features and applications.

Pizzi G, Vitale V, Arita R, Bluegel S, Freimuth F, Géranton G, Gibertini M, Gresch D, Johnson C, Koretsune T, Ibanez J, Lee H, Lihm JM, Marchand D, Marrazzo A, Mokrousov Y, Mustafa JI, Nohara Y, Nomura Y, Paulatto L, Ponce S, Ponweiser T, Qiao J, Thöle F, Tsirkin SS, Wierzbowska M, Marzari N, Vanderbilt D, Souza I, Mostofi AA, Yates JR.

J Phys Condens Matter. 2019 Oct 28. doi: 10.1088/1361-648X/ab51ff. [Epub ahead of print]

PMID:
31658458
7.

Biochemical analysis of protein arginylation.

Wang J, Yates JR 3rd, Kashina A.

Methods Enzymol. 2019;626:89-113. doi: 10.1016/bs.mie.2019.07.028. Epub 2019 Aug 1.

PMID:
31606094
8.

Tandem Mass Tag Proteomic Analysis of in Vitro and in Vivo Models of Cutaneous Leishmaniasis Reveals Parasite-Specific and Nonspecific Modulation of Proteins in the Host.

Negrão F, Diedrich JK, Giorgio S, Eberlin MN, Yates JR 3rd.

ACS Infect Dis. 2019 Dec 13;5(12):2136-2147. doi: 10.1021/acsinfecdis.9b00275. Epub 2019 Oct 24.

PMID:
31600437
9.

Long-term cognitive outcomes in tuberous sclerosis complex.

Tye C, Mcewen FS, Liang H, Underwood L, Woodhouse E, Barker ED, Sheerin F, Yates JRW, Bolton PF; Tuberous Sclerosis 2000 Study Group.

Dev Med Child Neurol. 2019 Sep 19. doi: 10.1111/dmcn.14356. [Epub ahead of print]

PMID:
31538337
10.

The interactome of 2-Cys peroxiredoxins in Plasmodium falciparum.

Brandstaedter C, Delahunty C, Schipper S, Rahlfs S, Yates JR 3rd, Becker K.

Sci Rep. 2019 Sep 19;9(1):13542. doi: 10.1038/s41598-019-49841-3.

11.

Effects of d-amphetamine and MK-801 on impulsive choice: Modulation by schedule of reinforcement and delay length.

Yates JR, Day HA, Evans KE, Igwe HO, Kappesser JL, Miller AL, Murray CP, Torline BT, Ellis AL, Stacy WL.

Behav Brain Res. 2019 Dec 30;376:112228. doi: 10.1016/j.bbr.2019.112228. Epub 2019 Sep 11.

PMID:
31520689
12.

Proteomics of Rat Lungs Infected by Cryptococcus gattii Reveals a Potential Warburg-like Effect.

Rosa RL, Berger M, Santi L, Driemeier D, Barros Terraciano P, Campos AR, Guimarães JA, Vainstein MH, Yates JR 3rd, Beys-da-Silva WO.

J Proteome Res. 2019 Nov 1;18(11):3885-3895. doi: 10.1021/acs.jproteome.9b00326. Epub 2019 Sep 26.

PMID:
31502459
13.

O-GlcNAcase targets pyruvate kinase M2 to regulate tumor growth.

Singh JP, Qian K, Lee JS, Zhou J, Han X, Zhang B, Ong Q, Ni W, Jiang M, Ruan HB, Li MD, Zhang K, Ding Z, Lee P, Singh K, Wu J, Herzog RI, Kaech S, Wendel HG, Yates JR 3rd, Han W, Sherwin RS, Nie Y, Yang X.

Oncogene. 2019 Sep 9. doi: 10.1038/s41388-019-0975-3. [Epub ahead of print]

PMID:
31501520
14.

Ready for the journey: a comparative proteome profiling of porcine cauda epididymal fluid and spermatozoa.

Weber A, Argenti LE, de Souza APB, Santi L, Beys-da-Silva WO, Yates JR 3rd, Bustamante-Filho IC.

Cell Tissue Res. 2019 Aug 23. doi: 10.1007/s00441-019-03080-0. [Epub ahead of print]

PMID:
31444576
15.

The Retinal Ganglion Cell Transportome Identifies Proteins Transported to Axons and Presynaptic Compartments in the Visual System In Vivo.

Schiapparelli LM, Shah SH, Ma Y, McClatchy DB, Sharma P, Li J, Yates JR 3rd, Goldberg JL, Cline HT.

Cell Rep. 2019 Aug 13;28(7):1935-1947.e5. doi: 10.1016/j.celrep.2019.07.037.

16.

Recent trends of capillary electrophoresis-mass spectrometry in proteomics research.

Gomes FP, Yates JR 3rd.

Mass Spectrom Rev. 2019 Nov;38(6):445-460. doi: 10.1002/mas.21599. Epub 2019 Aug 12. Review.

PMID:
31407381
17.

Comparison of CRISPR Genomic Tagging for Affinity Purification and Endogenous Immunoprecipitation Coupled with Quantitative Mass Spectrometry To Identify the Dynamic AMPKα2 Interactome.

Stein BD, Herzig S, Martínez-Bartolomé S, Lavallée-Adam M, Shaw RJ, Yates JR 3rd.

J Proteome Res. 2019 Oct 4;18(10):3703-3714. doi: 10.1021/acs.jproteome.9b00378. Epub 2019 Sep 6.

PMID:
31398040
18.

Dataset supporting the proteomic differences found between excretion/secretion products from two isolates of Fasciola hepatica newly excysted juveniles (NEJ) derived from different snail hosts.

Di Maggio LS, Tirloni L, Pinto AFM, Diedrich JK, Yates JR 3rd, Carmona C, Berasain P, da Silva Vaz I Jr.

Data Brief. 2019 Jul 15;25:104272. doi: 10.1016/j.dib.2019.104272. eCollection 2019 Aug.

19.

Exosomes regulate neurogenesis and circuit assembly.

Sharma P, Mesci P, Carromeu C, McClatchy DR, Schiapparelli L, Yates JR 3rd, Muotri AR, Cline HT.

Proc Natl Acad Sci U S A. 2019 Aug 6;116(32):16086-16094. doi: 10.1073/pnas.1902513116. Epub 2019 Jul 18.

20.

Proteomics INTegrator (PINT): An Online Tool To Store, Query, and Visualize Large Proteomics Experiment Results.

Martínez-Bartolomé S, Bamberger TC, Lavallée-Adam M, McClatchy DB, Yates JR 3rd.

J Proteome Res. 2019 Aug 2;18(8):2999-3008. doi: 10.1021/acs.jproteome.8b00711. Epub 2019 Jul 1.

PMID:
31260318
21.

DNA replication acts as an error correction mechanism to maintain centromere identity by restricting CENP-A to centromeres.

Nechemia-Arbely Y, Miga KH, Shoshani O, Aslanian A, McMahon MA, Lee AY, Fachinetti D, Yates JR 3rd, Ren B, Cleveland DW.

Nat Cell Biol. 2019 Jun;21(6):743-754. doi: 10.1038/s41556-019-0331-4. Epub 2019 Jun 3.

PMID:
31160708
22.

Exploring protein myristoylation in Toxoplasma gondii.

Alonso AM, Turowski VR, Ruiz DM, Orelo BD, Moresco JJ, Yates JR 3rd, Corvi MM.

Exp Parasitol. 2019 Aug;203:8-18. doi: 10.1016/j.exppara.2019.05.007. Epub 2019 May 28.

PMID:
31150653
23.

Identification of new transmembrane proteins concentrated at the nuclear envelope using organellar proteomics of mesenchymal cells.

Cheng LC, Baboo S, Lindsay C, Brusman L, Martinez-Bartolomé S, Tapia O, Zhang X, Yates JR 3rd, Gerace L.

Nucleus. 2019 Dec;10(1):126-143. doi: 10.1080/19491034.2019.1618175.

24.

Innovation: Risk-Takers and Visionaries.

Yates JR 3rd.

J Proteome Res. 2019 Jul 5;18(7):2693-2694. doi: 10.1021/acs.jproteome.8b00460. Epub 2019 May 23. No abstract available.

PMID:
31120765
25.

Using a dependent schedule to measure risky choice in male rats: Effects of d-amphetamine, methylphenidate, and methamphetamine.

Yates JR, Prior NA, Chitwood MR, Day HA, Heidel JR, Hopkins SE, Muncie BT, Paradella-Bradley TA, Sestito AP, Vecchiola AN, Wells EE.

Exp Clin Psychopharmacol. 2019 May 23. doi: 10.1037/pha0000300. [Epub ahead of print]

PMID:
31120280
26.

Comparative Proteomic Analysis of Murine Cutaneous Lesions Induced by Leishmania amazonensis or Leishmania major.

Negrão F, Giorgio S, Eberlin MN, Yates JR 3rd.

ACS Infect Dis. 2019 Aug 9;5(8):1295-1305. doi: 10.1021/acsinfecdis.8b00370. Epub 2019 May 29.

PMID:
31094195
27.

A Non-Dicer RNase III and Four Other Novel Factors Required for RNAi-Mediated Transposon Suppression in the Human Pathogenic Yeast Cryptococcus neoformans.

Burke JE, Longhurst AD, Natarajan P, Rao B, Liu J, Sales-Lee J, Mortensen Y, Moresco JJ, Diedrich JK, Yates JR 3rd, Madhani HD.

G3 (Bethesda). 2019 Jul 9;9(7):2235-2244. doi: 10.1534/g3.119.400330.

28.

Blood anticlotting activity of a Rhipicephalus microplus cathepsin L-like enzyme.

Xavier MA, Tirloni L, Torquato R, Tanaka A, Pinto AFM, Diedrich JK, Yates JR 3rd, da Silva Vaz I Jr, Seixas A, Termignoni C.

Biochimie. 2019 Aug;163:12-20. doi: 10.1016/j.biochi.2019.04.025. Epub 2019 May 3.

PMID:
31059753
29.

Regularized SCAN functional.

Bartók AP, Yates JR.

J Chem Phys. 2019 Apr 28;150(16):161101. doi: 10.1063/1.5094646.

PMID:
31042928
30.

Proteomics of Communities: Metaproteomics.

Yates JR 3rd.

J Proteome Res. 2019 Jun 7;18(6):2359. doi: 10.1021/acs.jproteome.9b00276. Epub 2019 May 1. No abstract available.

PMID:
31042043
31.

A quantitation module for isotope-labeled peptides integrated into PatternLab for proteomics.

Santos MDM, Lima DB, Silva ARF, Kurt LU, Clasen MA, Pinto AFM, Moresco JJ, Yates JR 3rd, Aquino P, Barbosa VC, Fischer JSG, Carvalho PC.

J Proteomics. 2019 Jun 30;202:103371. doi: 10.1016/j.jprot.2019.04.021. Epub 2019 Apr 26.

PMID:
31034900
32.

A proteomic comparison of excretion/secretion products in Fasciola hepatica newly excysted juveniles (NEJ) derived from Lymnaea viatrix or Pseudosuccinea columella.

Di Maggio LS, Tirloni L, Pinto AFM, Diedrich JK, Yates JR 3rd, Carmona C, Berasain P, da Silva Vaz I Jr.

Exp Parasitol. 2019 Jun;201:11-20. doi: 10.1016/j.exppara.2019.04.004. Epub 2019 Apr 22.

PMID:
31022392
33.

Paip2 cooperates with Cbp80 at an active promoter and participates in RNA Polymerase II phosphorylation in Drosophila.

Kachaev ZM, Lebedeva LA, Shaposhnikov AV, Moresco JJ, Yates JR 3rd, Schedl P, Shidlovskii YV.

FEBS Lett. 2019 May;593(10):1102-1112. doi: 10.1002/1873-3468.13391. Epub 2019 Apr 29.

PMID:
31001806
34.

Recent technical advances in proteomics.

Yates JR 3rd.

F1000Res. 2019 Mar 29;8. pii: F1000 Faculty Rev-351. doi: 10.12688/f1000research.16987.1. eCollection 2019. Review.

35.

Phosphotyrosine-dependent interaction between the kinases PKCθ and Zap70 promotes proximal TCR signaling.

Xie J, Han X, Zhao C, Canonigo-Balancio AJ, Yates JR 3rd, Li Y, Lillemeier BF, Altman A.

Sci Signal. 2019 Apr 16;12(577). pii: eaar3349. doi: 10.1126/scisignal.aar3349.

PMID:
30992398
36.

Label-Free Proteomic Analysis Reveals Parasite-Specific Protein Alterations in Macrophages Following Leishmania amazonensis, Leishmania major, or Leishmania infantum Infection.

Negrão F, Fernandez-Costa C, Zorgi N, Giorgio S, Nogueira Eberlin M, Yates JR 3rd.

ACS Infect Dis. 2019 Jun 14;5(6):851-862. doi: 10.1021/acsinfecdis.8b00338. Epub 2019 Apr 23.

PMID:
30978002
37.

Periocular Histiocytoid Carcinoma: Potential Diagnostic Challenges.

Yates JR, Mines MJ, Subramanian PS, Rivera-Michlig R, Cummings TJ, Eberhart CG.

Ocul Oncol Pathol. 2019 Feb;5(2):94-101. doi: 10.1159/000490250. Epub 2018 Jul 5.

38.

Venom Composition in a Phenotypically Variable Pit Viper ( Trimeresurus insularis) across the Lesser Sunda Archipelago.

Jones BK, Saviola AJ, Reilly SB, Stubbs AL, Arida E, Iskandar DT, McGuire JA, Yates JR 3rd, Mackessy SP.

J Proteome Res. 2019 May 3;18(5):2206-2220. doi: 10.1021/acs.jproteome.9b00077. Epub 2019 Apr 17.

PMID:
30958009
39.

Tick Gené's organ engagement in lipid metabolism revealed by a combined transcriptomic and proteomic approach.

Xavier MA, Tirloni L, Pinto AFM, Diedrich JK, Yates JR 3rd, Gonzales S, Farber M, da Silva Vaz I Junior, Termignoni C.

Ticks Tick Borne Dis. 2019 Jun;10(4):787-797. doi: 10.1016/j.ttbdis.2019.03.013. Epub 2019 Mar 20.

PMID:
30904537
40.

Perm1 regulates CaMKII activation and shapes skeletal muscle responses to endurance exercise training.

Cho Y, Tachibana S, Hazen BC, Moresco JJ, Yates JR 3rd, Kok B, Saez E, Ross RS, Russell AP, Kralli A.

Mol Metab. 2019 May;23:88-97. doi: 10.1016/j.molmet.2019.02.009. Epub 2019 Feb 27.

41.

The Lorentz sphere visualised.

Sturniolo S, Yates JR.

J Chem Phys. 2019 Mar 7;150(9):094103. doi: 10.1063/1.5080298.

PMID:
30849904
42.

Lonomia obliqua bristle extract modulates Rac1 activation, membrane dynamics and cell adhesion properties.

Bernardi L, Pinto AFM, Mendes E, Yates JR 3rd, Lamers ML.

Toxicon. 2019 Apr 15;162:32-39. doi: 10.1016/j.toxicon.2019.02.019. Epub 2019 Mar 6.

PMID:
30849455
43.

Group I metabotropic glutamate receptor antagonists impair discriminability of reinforcer magnitude, but not risky choice, in a probability-discounting task.

Yates JR, Chitwood MR, Evans KE, Kappesser JL, Murray CP, Paradella-Bradley TA, Torline BT.

Behav Brain Res. 2019 Jun 3;365:77-81. doi: 10.1016/j.bbr.2019.02.047. Epub 2019 Mar 1.

PMID:
30831139
44.

Proteomic analyses reveal misregulation of LIN28 expression and delayed timing of glial differentiation in human iPS cells with MECP2 loss-of-function.

Kim JJ, Savas JN, Miller MT, Hu X, Carromeu C, Lavallée-Adam M, Freitas BCG, Muotri AR, Yates JR 3rd, Ghosh A.

PLoS One. 2019 Feb 21;14(2):e0212553. doi: 10.1371/journal.pone.0212553. eCollection 2019.

45.

Reducing the computational cost of NMR crystallography of organic powders at natural isotopic abundance with the help of 13 C-13 C dipolar couplings.

Thureau P, Sturniolo S, Zilka M, Ziarelli F, Viel S, Yates JR, Mollica G.

Magn Reson Chem. 2019 May;57(5):256-264. doi: 10.1002/mrc.4848. Epub 2019 Mar 11.

PMID:
30735578
46.

The circadian E3 ligase complex SCFFBXL3+CRY targets TLK2.

Correia SP, Chan AB, Vaughan M, Zolboot N, Perea V, Huber AL, Kriebs A, Moresco JJ, Yates JR 3rd, Lamia KA.

Sci Rep. 2019 Jan 17;9(1):198. doi: 10.1038/s41598-018-36618-3.

47.

Mitogenic Signals Stimulate the CREB Coactivator CRTC3 through PP2A Recruitment.

Sonntag T, Ostojić J, Vaughan JM, Moresco JJ, Yoon YS, Yates JR 3rd, Montminy M.

iScience. 2019 Jan 25;11:134-145. doi: 10.1016/j.isci.2018.12.012. Epub 2018 Dec 19.

48.

A posttranslational modification code for CFTR maturation is altered in cystic fibrosis.

Pankow S, Bamberger C, Yates JR 3rd.

Sci Signal. 2019 Jan 1;12(562). pii: eaan7984. doi: 10.1126/scisignal.aan7984.

49.

Examining the neurochemical underpinnings of animal models of risky choice: Methodological and analytic considerations.

Yates JR.

Exp Clin Psychopharmacol. 2019 Apr;27(2):178-201. doi: 10.1037/pha0000239. Epub 2018 Dec 20. Review.

50.

From Synapse to Function: A Perspective on the Role of Neuroproteomics in Elucidating Mechanisms of Drug Addiction.

Natividad LA, Buczynski MW, McClatchy DB, Yates JR 3rd.

Proteomes. 2018 Dec 9;6(4). pii: E50. doi: 10.3390/proteomes6040050. Review.

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