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Items: 1 to 50 of 1082

1.

Time-resolved proteomic profile of Amblyomma americanum tick saliva during feeding.

Kim TK, Tirloni L, Pinto AFM, Diedrich JK, Moresco JJ, Yates JR 3rd, da Silva Vaz I Jr, Mulenga A.

PLoS Negl Trop Dis. 2020 Feb 12;14(2):e0007758. doi: 10.1371/journal.pntd.0007758. [Epub ahead of print]

2.

Increased circulating levels of Factor H-Related Protein 4 are strongly associated with age-related macular degeneration.

Cipriani V, Lorés-Motta L, He F, Fathalla D, Tilakaratna V, McHarg S, Bayatti N, Acar İE, Hoyng CB, Fauser S, Moore AT, Yates JRW, de Jong EK, Morgan BP, den Hollander AI, Bishop PN, Clark SJ.

Nat Commun. 2020 Feb 7;11(1):778. doi: 10.1038/s41467-020-14499-3.

3.

Twelve Rules for Science (Yates Lab Version).

Yates JR 3rd.

J Proteome Res. 2020 Feb 7. doi: 10.1021/acs.jproteome.0c00040. [Epub ahead of print] No abstract available.

PMID:
32030981
4.

Measuring multiple 17O-13C J-couplings in naphthalaldehydic acid: a combined solid state NMR and density functional theory approach.

Rees GJ, Day SP, Barnsley KE, Iuga D, Yates JR, Wallis JD, Hanna JV.

Phys Chem Chem Phys. 2020 Feb 12;22(6):3400-3413. doi: 10.1039/c9cp03977e.

PMID:
31984388
5.

EThcD and 213 nm UVPD for Top-Down Analysis of Bovine Seminal Plasma Proteoforms on Electrophoretic and Chromatographic Time Frames.

Gomes FP, Diedrich JK, Saviola AJ, Memili E, Moura AA, Yates JR 3rd.

Anal Chem. 2020 Jan 29. doi: 10.1021/acs.analchem.9b03856. [Epub ahead of print]

PMID:
31962043
6.

Evolutionary Persistence of DNA Methylation for Millions of Years after Ancient Loss of a De Novo Methyltransferase.

Catania S, Dumesic PA, Pimentel H, Nasif A, Stoddard CI, Burke JE, Diedrich JK, Cooke S, Shea T, Gienger E, Lintner R, Yates JR 3rd, Hajkova P, Narlikar GJ, Cuomo CA, Pritchard JK, Madhani HD.

Cell. 2020 Jan 23;180(2):263-277.e20. doi: 10.1016/j.cell.2019.12.012. Epub 2020 Jan 16.

PMID:
31955845
7.

Correction: Interactome analysis of the lymphocytic choriomeningitis virus nucleoprotein in infected cells reveals ATPase Na+/K+ transporting subunit Alpha 1 and prohibitin as host-cell factors involved in the life cycle of mammarenaviruses.

Iwasaki M, Minder P, Caì Y, Kuhn JH, Yates JR 3rd, Torbett BE, de la Torre JC.

PLoS Pathog. 2020 Jan 6;16(1):e1008289. doi: 10.1371/journal.ppat.1008289. eCollection 2020 Jan.

8.

Improving Proteomics Data Reproducibility with a Dual-Search Strategy.

Fernández-Costa C, Martínez-Bartolomé S, McClatchy D, Yates JR 3rd.

Anal Chem. 2020 Jan 21;92(2):1697-1701. doi: 10.1021/acs.analchem.9b04955. Epub 2020 Jan 9.

PMID:
31880919
9.

Weak Intermolecular CH···N Hydrogen Bonding: Determination of 13CH-15N Hydrogen-Bond Mediated J Couplings by Solid-State NMR Spectroscopy and First-Principles Calculations.

Webber AL, Yates JR, Zilka M, Sturniolo S, Uldry AC, Corlett EK, Pickard CJ, Pérez-Torralba M, Angeles Garcia M, Santa Maria D, Claramunt RM, Brown SP.

J Phys Chem A. 2020 Jan 23;124(3):560-572. doi: 10.1021/acs.jpca.9b10726. Epub 2020 Jan 9.

PMID:
31880451
10.

Quantitative In Vivo Proteomics of Metformin Response in Liver Reveals AMPK-Dependent and -Independent Signaling Networks.

Stein BD, Calzolari D, Hellberg K, Hu YS, He L, Hung CM, Toyama EQ, Ross DS, Lillemeier BF, Cantley LC, Yates JR 3rd, Shaw RJ.

Cell Rep. 2019 Dec 3;29(10):3331-3348.e7. doi: 10.1016/j.celrep.2019.10.117.

11.

The KLDpT activation loop motif is critical for MARK kinase activity.

Sonntag T, Moresco JJ, Yates JR 3rd, Montminy M.

PLoS One. 2019 Dec 3;14(12):e0225727. doi: 10.1371/journal.pone.0225727. eCollection 2019.

12.

Response to "Comment on 'Regularized SCAN functional'" [J. Chem. Phys. 151, 207101 (2019)].

Bartók AP, Yates JR.

J Chem Phys. 2019 Nov 28;151(20):207102. doi: 10.1063/1.5128484. No abstract available.

PMID:
31779330
13.

Integrative proteomics and pharmacogenomics analysis of methylphenidate treatment response.

da Silva BS, Leffa DT, Beys-da-Silva WO, Torres ILS, Rovaris DL, Victor MM, Rohde LA, Mota NR, Oliveira C, Berger M, Yates JR 3rd, Sabnis R, Peña RD, Campos AR, Grevet EH, Santi L, Bau CHD, Contini V.

Transl Psychiatry. 2019 Nov 18;9(1):308. doi: 10.1038/s41398-019-0649-5.

14.

Function of the MYND Domain and C-Terminal Region in Regulating the Subcellular Localization and Catalytic Activity of the SMYD Family Lysine Methyltransferase Set5.

Jaiswal D, Turniansky R, Moresco JJ, Ikram S, Ramaprasad G, Akinwole A, Wolf J, Yates JR 3rd, Green EM.

Mol Cell Biol. 2020 Jan 3;40(2). pii: e00341-19. doi: 10.1128/MCB.00341-19. Print 2020 Jan 3.

PMID:
31685550
15.

Wannier90 as a community code: new features and applications.

Pizzi G, Vitale V, Arita R, Blügel S, Freimuth F, Géranton G, Gibertini M, Gresch D, Johnson C, Koretsune T, Ibañez-Azpiroz J, Lee H, Lihm JM, Marchand D, Marrazzo A, Mokrousov Y, Mustafa JI, Nohara Y, Nomura Y, Paulatto L, Poncé S, Ponweiser T, Qiao J, Thöle F, Tsirkin SS, Wierzbowska M, Marzari N, Vanderbilt D, Souza I, Mostofi AA, Yates JR.

J Phys Condens Matter. 2019 Oct 28;32(16):165902. doi: 10.1088/1361-648X/ab51ff. [Epub ahead of print]

PMID:
31658458
16.

Biochemical analysis of protein arginylation.

Wang J, Yates JR 3rd, Kashina A.

Methods Enzymol. 2019;626:89-113. doi: 10.1016/bs.mie.2019.07.028. Epub 2019 Aug 1.

PMID:
31606094
17.

Tandem Mass Tag Proteomic Analysis of in Vitro and in Vivo Models of Cutaneous Leishmaniasis Reveals Parasite-Specific and Nonspecific Modulation of Proteins in the Host.

Negrão F, Diedrich JK, Giorgio S, Eberlin MN, Yates JR 3rd.

ACS Infect Dis. 2019 Dec 13;5(12):2136-2147. doi: 10.1021/acsinfecdis.9b00275. Epub 2019 Oct 24.

PMID:
31600437
18.

Long-term cognitive outcomes in tuberous sclerosis complex.

Tye C, Mcewen FS, Liang H, Underwood L, Woodhouse E, Barker ED, Sheerin F, Yates JRW, Bolton PF; Tuberous Sclerosis 2000 Study Group.

Dev Med Child Neurol. 2020 Mar;62(3):322-329. doi: 10.1111/dmcn.14356. Epub 2019 Sep 19.

PMID:
31538337
19.

The interactome of 2-Cys peroxiredoxins in Plasmodium falciparum.

Brandstaedter C, Delahunty C, Schipper S, Rahlfs S, Yates JR 3rd, Becker K.

Sci Rep. 2019 Sep 19;9(1):13542. doi: 10.1038/s41598-019-49841-3.

20.

Effects of d-amphetamine and MK-801 on impulsive choice: Modulation by schedule of reinforcement and delay length.

Yates JR, Day HA, Evans KE, Igwe HO, Kappesser JL, Miller AL, Murray CP, Torline BT, Ellis AL, Stacy WL.

Behav Brain Res. 2019 Dec 30;376:112228. doi: 10.1016/j.bbr.2019.112228. Epub 2019 Sep 11.

PMID:
31520689
21.

Proteomics of Rat Lungs Infected by Cryptococcus gattii Reveals a Potential Warburg-like Effect.

Rosa RL, Berger M, Santi L, Driemeier D, Barros Terraciano P, Campos AR, Guimarães JA, Vainstein MH, Yates JR 3rd, Beys-da-Silva WO.

J Proteome Res. 2019 Nov 1;18(11):3885-3895. doi: 10.1021/acs.jproteome.9b00326. Epub 2019 Sep 26.

PMID:
31502459
22.

O-GlcNAcase targets pyruvate kinase M2 to regulate tumor growth.

Singh JP, Qian K, Lee JS, Zhou J, Han X, Zhang B, Ong Q, Ni W, Jiang M, Ruan HB, Li MD, Zhang K, Ding Z, Lee P, Singh K, Wu J, Herzog RI, Kaech S, Wendel HG, Yates JR 3rd, Han W, Sherwin RS, Nie Y, Yang X.

Oncogene. 2020 Jan;39(3):560-573. doi: 10.1038/s41388-019-0975-3. Epub 2019 Sep 9.

PMID:
31501520
23.

Ready for the journey: a comparative proteome profiling of porcine cauda epididymal fluid and spermatozoa.

Weber A, Argenti LE, de Souza APB, Santi L, Beys-da-Silva WO, Yates JR 3rd, Bustamante-Filho IC.

Cell Tissue Res. 2020 Feb;379(2):389-405. doi: 10.1007/s00441-019-03080-0. Epub 2019 Aug 23.

PMID:
31444576
24.

The Retinal Ganglion Cell Transportome Identifies Proteins Transported to Axons and Presynaptic Compartments in the Visual System In Vivo.

Schiapparelli LM, Shah SH, Ma Y, McClatchy DB, Sharma P, Li J, Yates JR 3rd, Goldberg JL, Cline HT.

Cell Rep. 2019 Aug 13;28(7):1935-1947.e5. doi: 10.1016/j.celrep.2019.07.037.

25.

Recent trends of capillary electrophoresis-mass spectrometry in proteomics research.

Gomes FP, Yates JR 3rd.

Mass Spectrom Rev. 2019 Nov;38(6):445-460. doi: 10.1002/mas.21599. Epub 2019 Aug 12. Review.

PMID:
31407381
26.

Comparison of CRISPR Genomic Tagging for Affinity Purification and Endogenous Immunoprecipitation Coupled with Quantitative Mass Spectrometry To Identify the Dynamic AMPKα2 Interactome.

Stein BD, Herzig S, Martínez-Bartolomé S, Lavallée-Adam M, Shaw RJ, Yates JR 3rd.

J Proteome Res. 2019 Oct 4;18(10):3703-3714. doi: 10.1021/acs.jproteome.9b00378. Epub 2019 Sep 6.

PMID:
31398040
27.

Dataset supporting the proteomic differences found between excretion/secretion products from two isolates of Fasciola hepatica newly excysted juveniles (NEJ) derived from different snail hosts.

Di Maggio LS, Tirloni L, Pinto AFM, Diedrich JK, Yates JR 3rd, Carmona C, Berasain P, da Silva Vaz I Jr.

Data Brief. 2019 Jul 15;25:104272. doi: 10.1016/j.dib.2019.104272. eCollection 2019 Aug.

28.

Exosomes regulate neurogenesis and circuit assembly.

Sharma P, Mesci P, Carromeu C, McClatchy DR, Schiapparelli L, Yates JR 3rd, Muotri AR, Cline HT.

Proc Natl Acad Sci U S A. 2019 Aug 6;116(32):16086-16094. doi: 10.1073/pnas.1902513116. Epub 2019 Jul 18.

29.

Proteomics INTegrator (PINT): An Online Tool To Store, Query, and Visualize Large Proteomics Experiment Results.

Martínez-Bartolomé S, Bamberger TC, Lavallée-Adam M, McClatchy DB, Yates JR 3rd.

J Proteome Res. 2019 Aug 2;18(8):2999-3008. doi: 10.1021/acs.jproteome.8b00711. Epub 2019 Jul 1.

PMID:
31260318
30.

DNA replication acts as an error correction mechanism to maintain centromere identity by restricting CENP-A to centromeres.

Nechemia-Arbely Y, Miga KH, Shoshani O, Aslanian A, McMahon MA, Lee AY, Fachinetti D, Yates JR 3rd, Ren B, Cleveland DW.

Nat Cell Biol. 2019 Jun;21(6):743-754. doi: 10.1038/s41556-019-0331-4. Epub 2019 Jun 3.

31.

Exploring protein myristoylation in Toxoplasma gondii.

Alonso AM, Turowski VR, Ruiz DM, Orelo BD, Moresco JJ, Yates JR 3rd, Corvi MM.

Exp Parasitol. 2019 Aug;203:8-18. doi: 10.1016/j.exppara.2019.05.007. Epub 2019 May 28.

PMID:
31150653
32.

Identification of new transmembrane proteins concentrated at the nuclear envelope using organellar proteomics of mesenchymal cells.

Cheng LC, Baboo S, Lindsay C, Brusman L, Martinez-Bartolomé S, Tapia O, Zhang X, Yates JR 3rd, Gerace L.

Nucleus. 2019 Dec;10(1):126-143. doi: 10.1080/19491034.2019.1618175.

33.

Innovation: Risk-Takers and Visionaries.

Yates JR 3rd.

J Proteome Res. 2019 Jul 5;18(7):2693-2694. doi: 10.1021/acs.jproteome.8b00460. Epub 2019 May 23. No abstract available.

PMID:
31120765
34.

Using a dependent schedule to measure risky choice in male rats: Effects of d-amphetamine, methylphenidate, and methamphetamine.

Yates JR, Prior NA, Chitwood MR, Day HA, Heidel JR, Hopkins SE, Muncie BT, Paradella-Bradley TA, Sestito AP, Vecchiola AN, Wells EE.

Exp Clin Psychopharmacol. 2019 May 23. doi: 10.1037/pha0000300. [Epub ahead of print]

PMID:
31120280
35.

Comparative Proteomic Analysis of Murine Cutaneous Lesions Induced by Leishmania amazonensis or Leishmania major.

Negrão F, Giorgio S, Eberlin MN, Yates JR 3rd.

ACS Infect Dis. 2019 Aug 9;5(8):1295-1305. doi: 10.1021/acsinfecdis.8b00370. Epub 2019 May 29.

PMID:
31094195
36.

A Non-Dicer RNase III and Four Other Novel Factors Required for RNAi-Mediated Transposon Suppression in the Human Pathogenic Yeast Cryptococcus neoformans.

Burke JE, Longhurst AD, Natarajan P, Rao B, Liu J, Sales-Lee J, Mortensen Y, Moresco JJ, Diedrich JK, Yates JR 3rd, Madhani HD.

G3 (Bethesda). 2019 Jul 9;9(7):2235-2244. doi: 10.1534/g3.119.400330.

37.

Blood anticlotting activity of a Rhipicephalus microplus cathepsin L-like enzyme.

Xavier MA, Tirloni L, Torquato R, Tanaka A, Pinto AFM, Diedrich JK, Yates JR 3rd, da Silva Vaz I Jr, Seixas A, Termignoni C.

Biochimie. 2019 Aug;163:12-20. doi: 10.1016/j.biochi.2019.04.025. Epub 2019 May 3.

PMID:
31059753
38.

Regularized SCAN functional.

Bartók AP, Yates JR.

J Chem Phys. 2019 Apr 28;150(16):161101. doi: 10.1063/1.5094646.

PMID:
31042928
39.

Proteomics of Communities: Metaproteomics.

Yates JR 3rd.

J Proteome Res. 2019 Jun 7;18(6):2359. doi: 10.1021/acs.jproteome.9b00276. Epub 2019 May 1. No abstract available.

PMID:
31042043
40.

A quantitation module for isotope-labeled peptides integrated into PatternLab for proteomics.

Santos MDM, Lima DB, Silva ARF, Kurt LU, Clasen MA, Pinto AFM, Moresco JJ, Yates JR 3rd, Aquino P, Barbosa VC, Fischer JSG, Carvalho PC.

J Proteomics. 2019 Jun 30;202:103371. doi: 10.1016/j.jprot.2019.04.021. Epub 2019 Apr 26.

PMID:
31034900
41.

A proteomic comparison of excretion/secretion products in Fasciola hepatica newly excysted juveniles (NEJ) derived from Lymnaea viatrix or Pseudosuccinea columella.

Di Maggio LS, Tirloni L, Pinto AFM, Diedrich JK, Yates JR 3rd, Carmona C, Berasain P, da Silva Vaz I Jr.

Exp Parasitol. 2019 Jun;201:11-20. doi: 10.1016/j.exppara.2019.04.004. Epub 2019 Apr 22.

PMID:
31022392
42.

Paip2 cooperates with Cbp80 at an active promoter and participates in RNA Polymerase II phosphorylation in Drosophila.

Kachaev ZM, Lebedeva LA, Shaposhnikov AV, Moresco JJ, Yates JR 3rd, Schedl P, Shidlovskii YV.

FEBS Lett. 2019 May;593(10):1102-1112. doi: 10.1002/1873-3468.13391. Epub 2019 Apr 29.

PMID:
31001806
43.

Recent technical advances in proteomics.

Yates JR 3rd.

F1000Res. 2019 Mar 29;8. pii: F1000 Faculty Rev-351. doi: 10.12688/f1000research.16987.1. eCollection 2019. Review.

44.

Phosphotyrosine-dependent interaction between the kinases PKCθ and Zap70 promotes proximal TCR signaling.

Xie J, Han X, Zhao C, Canonigo-Balancio AJ, Yates JR 3rd, Li Y, Lillemeier BF, Altman A.

Sci Signal. 2019 Apr 16;12(577). pii: eaar3349. doi: 10.1126/scisignal.aar3349.

PMID:
30992398
45.

Label-Free Proteomic Analysis Reveals Parasite-Specific Protein Alterations in Macrophages Following Leishmania amazonensis, Leishmania major, or Leishmania infantum Infection.

Negrão F, Fernandez-Costa C, Zorgi N, Giorgio S, Nogueira Eberlin M, Yates JR 3rd.

ACS Infect Dis. 2019 Jun 14;5(6):851-862. doi: 10.1021/acsinfecdis.8b00338. Epub 2019 Apr 23.

PMID:
30978002
46.

Periocular Histiocytoid Carcinoma: Potential Diagnostic Challenges.

Yates JR, Mines MJ, Subramanian PS, Rivera-Michlig R, Cummings TJ, Eberhart CG.

Ocul Oncol Pathol. 2019 Feb;5(2):94-101. doi: 10.1159/000490250. Epub 2018 Jul 5.

47.

Venom Composition in a Phenotypically Variable Pit Viper ( Trimeresurus insularis) across the Lesser Sunda Archipelago.

Jones BK, Saviola AJ, Reilly SB, Stubbs AL, Arida E, Iskandar DT, McGuire JA, Yates JR 3rd, Mackessy SP.

J Proteome Res. 2019 May 3;18(5):2206-2220. doi: 10.1021/acs.jproteome.9b00077. Epub 2019 Apr 17.

PMID:
30958009
48.

Tick Gené's organ engagement in lipid metabolism revealed by a combined transcriptomic and proteomic approach.

Xavier MA, Tirloni L, Pinto AFM, Diedrich JK, Yates JR 3rd, Gonzales S, Farber M, da Silva Vaz I Junior, Termignoni C.

Ticks Tick Borne Dis. 2019 Jun;10(4):787-797. doi: 10.1016/j.ttbdis.2019.03.013. Epub 2019 Mar 20.

PMID:
30904537
49.

Perm1 regulates CaMKII activation and shapes skeletal muscle responses to endurance exercise training.

Cho Y, Tachibana S, Hazen BC, Moresco JJ, Yates JR 3rd, Kok B, Saez E, Ross RS, Russell AP, Kralli A.

Mol Metab. 2019 May;23:88-97. doi: 10.1016/j.molmet.2019.02.009. Epub 2019 Feb 27.

50.

The Lorentz sphere visualised.

Sturniolo S, Yates JR.

J Chem Phys. 2019 Mar 7;150(9):094103. doi: 10.1063/1.5080298.

PMID:
30849904

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