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Items: 1 to 50 of 1059

1.

The Retinal Ganglion Cell Transportome Identifies Proteins Transported to Axons and Presynaptic Compartments in the Visual System In Vivo.

Schiapparelli LM, Shah SH, Ma Y, McClatchy DB, Sharma P, Li J, Yates JR 3rd, Goldberg JL, Cline HT.

Cell Rep. 2019 Aug 13;28(7):1935-1947.e5. doi: 10.1016/j.celrep.2019.07.037.

PMID:
31412257
2.

Recent trends of capillary electrophoresis-mass spectrometry in proteomics research.

Gomes FP, Yates JR 3rd.

Mass Spectrom Rev. 2019 Aug 12. doi: 10.1002/mas.21599. [Epub ahead of print] Review.

PMID:
31407381
3.

Comparison of CRISPR Genomic Tagging and Endogenous Immunoprecipitation coupled with Quantitative Mass Spectrometry to Identify Dynamic AMPK alpha 2 Protein Interactions.

Stein BD, Herzig S, Martínez-Bartolomé S, Lavallée-Adam M, Shaw RJ, Yates JR.

J Proteome Res. 2019 Aug 9. doi: 10.1021/acs.jproteome.9b00378. [Epub ahead of print]

PMID:
31398040
4.

Dataset supporting the proteomic differences found between excretion/secretion products from two isolates of Fasciola hepatica newly excysted juveniles (NEJ) derived from different snail hosts.

Di Maggio LS, Tirloni L, Pinto AFM, Diedrich JK, Yates JR 3rd, Carmona C, Berasain P, da Silva Vaz I Jr.

Data Brief. 2019 Jul 15;25:104272. doi: 10.1016/j.dib.2019.104272. eCollection 2019 Aug.

5.

Exosomes regulate neurogenesis and circuit assembly.

Sharma P, Mesci P, Carromeu C, McClatchy DR, Schiapparelli L, Yates JR 3rd, Muotri AR, Cline HT.

Proc Natl Acad Sci U S A. 2019 Aug 6;116(32):16086-16094. doi: 10.1073/pnas.1902513116. Epub 2019 Jul 18.

6.

Proteomics INTegrator (PINT): An Online Tool To Store, Query, and Visualize Large Proteomics Experiment Results.

Martínez-Bartolomé S, Bamberger TC, Lavallée-Adam M, McClatchy DB, Yates JR 3rd.

J Proteome Res. 2019 Aug 2;18(8):2999-3008. doi: 10.1021/acs.jproteome.8b00711. Epub 2019 Jul 1.

PMID:
31260318
7.

DNA replication acts as an error correction mechanism to maintain centromere identity by restricting CENP-A to centromeres.

Nechemia-Arbely Y, Miga KH, Shoshani O, Aslanian A, McMahon MA, Lee AY, Fachinetti D, Yates JR 3rd, Ren B, Cleveland DW.

Nat Cell Biol. 2019 Jun;21(6):743-754. doi: 10.1038/s41556-019-0331-4. Epub 2019 Jun 3.

PMID:
31160708
8.

Exploring protein myristoylation in Toxoplasma gondii.

Alonso AM, Turowski VR, Ruiz DM, Orelo BD, Moresco JJ, Yates JR 3rd, Corvi MM.

Exp Parasitol. 2019 Aug;203:8-18. doi: 10.1016/j.exppara.2019.05.007. Epub 2019 May 28.

PMID:
31150653
9.

Identification of new transmembrane proteins concentrated at the nuclear envelope using organellar proteomics of mesenchymal cells.

Cheng LC, Baboo S, Lindsay C, Brusman L, Martinez-Bartolomé S, Tapia O, Zhang X, Yates JR 3rd, Gerace L.

Nucleus. 2019 Dec;10(1):126-143. doi: 10.1080/19491034.2019.1618175.

10.

Innovation: Risk-Takers and Visionaries.

Yates JR 3rd.

J Proteome Res. 2019 Jul 5;18(7):2693-2694. doi: 10.1021/acs.jproteome.8b00460. Epub 2019 May 23. No abstract available.

PMID:
31120765
11.

Using a dependent schedule to measure risky choice in male rats: Effects of d-amphetamine, methylphenidate, and methamphetamine.

Yates JR, Prior NA, Chitwood MR, Day HA, Heidel JR, Hopkins SE, Muncie BT, Paradella-Bradley TA, Sestito AP, Vecchiola AN, Wells EE.

Exp Clin Psychopharmacol. 2019 May 23. doi: 10.1037/pha0000300. [Epub ahead of print]

PMID:
31120280
12.

Comparative Proteomic Analysis of Murine Cutaneous Lesions Induced by Leishmania amazonensis or Leishmania major.

Negrão F, Giorgio S, Eberlin MN, Yates JR 3rd.

ACS Infect Dis. 2019 Aug 9;5(8):1295-1305. doi: 10.1021/acsinfecdis.8b00370. Epub 2019 May 29.

PMID:
31094195
13.

A Non-Dicer RNase III and Four Other Novel Factors Required for RNAi-Mediated Transposon Suppression in the Human Pathogenic Yeast Cryptococcus neoformans.

Burke JE, Longhurst AD, Natarajan P, Rao B, Liu J, Sales-Lee J, Mortensen Y, Moresco JJ, Diedrich JK, Yates JR 3rd, Madhani HD.

G3 (Bethesda). 2019 Jul 9;9(7):2235-2244. doi: 10.1534/g3.119.400330.

14.

Blood anticlotting activity of a Rhipicephalus microplus cathepsin L-like enzyme.

Xavier MA, Tirloni L, Torquato R, Tanaka A, Pinto AFM, Diedrich JK, Yates JR 3rd, da Silva Vaz I Jr, Seixas A, Termignoni C.

Biochimie. 2019 Aug;163:12-20. doi: 10.1016/j.biochi.2019.04.025. Epub 2019 May 3.

PMID:
31059753
15.

Regularized SCAN functional.

Bartók AP, Yates JR.

J Chem Phys. 2019 Apr 28;150(16):161101. doi: 10.1063/1.5094646.

PMID:
31042928
16.

Proteomics of Communities: Metaproteomics.

Yates JR 3rd.

J Proteome Res. 2019 Jun 7;18(6):2359. doi: 10.1021/acs.jproteome.9b00276. Epub 2019 May 1. No abstract available.

PMID:
31042043
17.

A quantitation module for isotope-labeled peptides integrated into PatternLab for proteomics.

Santos MDM, Lima DB, Silva ARF, Kurt LU, Clasen MA, Pinto AFM, Moresco JJ, Yates JR 3rd, Aquino P, Barbosa VC, Fischer JSG, Carvalho PC.

J Proteomics. 2019 Jun 30;202:103371. doi: 10.1016/j.jprot.2019.04.021. Epub 2019 Apr 26.

PMID:
31034900
18.

A proteomic comparison of excretion/secretion products in Fasciola hepatica newly excysted juveniles (NEJ) derived from Lymnaea viatrix or Pseudosuccinea columella.

Di Maggio LS, Tirloni L, Pinto AFM, Diedrich JK, Yates JR 3rd, Carmona C, Berasain P, da Silva Vaz I Jr.

Exp Parasitol. 2019 Jun;201:11-20. doi: 10.1016/j.exppara.2019.04.004. Epub 2019 Apr 22.

PMID:
31022392
19.

Paip2 cooperates with Cbp80 at an active promoter and participates in RNA Polymerase II phosphorylation in Drosophila.

Kachaev ZM, Lebedeva LA, Shaposhnikov AV, Moresco JJ, Yates JR 3rd, Schedl P, Shidlovskii YV.

FEBS Lett. 2019 May;593(10):1102-1112. doi: 10.1002/1873-3468.13391. Epub 2019 Apr 29.

PMID:
31001806
20.

Recent technical advances in proteomics.

Yates JR 3rd.

F1000Res. 2019 Mar 29;8. pii: F1000 Faculty Rev-351. doi: 10.12688/f1000research.16987.1. eCollection 2019. Review.

21.

Phosphotyrosine-dependent interaction between the kinases PKCθ and Zap70 promotes proximal TCR signaling.

Xie J, Han X, Zhao C, Canonigo-Balancio AJ, Yates JR 3rd, Li Y, Lillemeier BF, Altman A.

Sci Signal. 2019 Apr 16;12(577). pii: eaar3349. doi: 10.1126/scisignal.aar3349.

PMID:
30992398
22.

Label-Free Proteomic Analysis Reveals Parasite-Specific Protein Alterations in Macrophages Following Leishmania amazonensis, Leishmania major, or Leishmania infantum Infection.

Negrão F, Fernandez-Costa C, Zorgi N, Giorgio S, Nogueira Eberlin M, Yates JR 3rd.

ACS Infect Dis. 2019 Jun 14;5(6):851-862. doi: 10.1021/acsinfecdis.8b00338. Epub 2019 Apr 23.

PMID:
30978002
23.

Periocular Histiocytoid Carcinoma: Potential Diagnostic Challenges.

Yates JR, Mines MJ, Subramanian PS, Rivera-Michlig R, Cummings TJ, Eberhart CG.

Ocul Oncol Pathol. 2019 Feb;5(2):94-101. doi: 10.1159/000490250. Epub 2018 Jul 5.

24.

Venom Composition in a Phenotypically Variable Pit Viper ( Trimeresurus insularis) across the Lesser Sunda Archipelago.

Jones BK, Saviola AJ, Reilly SB, Stubbs AL, Arida E, Iskandar DT, McGuire JA, Yates JR 3rd, Mackessy SP.

J Proteome Res. 2019 May 3;18(5):2206-2220. doi: 10.1021/acs.jproteome.9b00077. Epub 2019 Apr 17.

PMID:
30958009
25.

Tick Gené's organ engagement in lipid metabolism revealed by a combined transcriptomic and proteomic approach.

Xavier MA, Tirloni L, Pinto AFM, Diedrich JK, Yates JR 3rd, Gonzales S, Farber M, da Silva Vaz I Junior, Termignoni C.

Ticks Tick Borne Dis. 2019 Jun;10(4):787-797. doi: 10.1016/j.ttbdis.2019.03.013. Epub 2019 Mar 20.

PMID:
30904537
26.

Perm1 regulates CaMKII activation and shapes skeletal muscle responses to endurance exercise training.

Cho Y, Tachibana S, Hazen BC, Moresco JJ, Yates JR 3rd, Kok B, Saez E, Ross RS, Russell AP, Kralli A.

Mol Metab. 2019 May;23:88-97. doi: 10.1016/j.molmet.2019.02.009. Epub 2019 Feb 27.

27.

The Lorentz sphere visualised.

Sturniolo S, Yates JR.

J Chem Phys. 2019 Mar 7;150(9):094103. doi: 10.1063/1.5080298.

PMID:
30849904
28.

Lonomia obliqua bristle extract modulates Rac1 activation, membrane dynamics and cell adhesion properties.

Bernardi L, Pinto AFM, Mendes E, Yates JR 3rd, Lamers ML.

Toxicon. 2019 Apr 15;162:32-39. doi: 10.1016/j.toxicon.2019.02.019. Epub 2019 Mar 6.

PMID:
30849455
29.

Group I metabotropic glutamate receptor antagonists impair discriminability of reinforcer magnitude, but not risky choice, in a probability-discounting task.

Yates JR, Chitwood MR, Evans KE, Kappesser JL, Murray CP, Paradella-Bradley TA, Torline BT.

Behav Brain Res. 2019 Jun 3;365:77-81. doi: 10.1016/j.bbr.2019.02.047. Epub 2019 Mar 1.

PMID:
30831139
30.

Proteomic analyses reveal misregulation of LIN28 expression and delayed timing of glial differentiation in human iPS cells with MECP2 loss-of-function.

Kim JJ, Savas JN, Miller MT, Hu X, Carromeu C, Lavallée-Adam M, Freitas BCG, Muotri AR, Yates JR 3rd, Ghosh A.

PLoS One. 2019 Feb 21;14(2):e0212553. doi: 10.1371/journal.pone.0212553. eCollection 2019.

31.

Reducing the computational cost of NMR crystallography of organic powders at natural isotopic abundance with the help of 13 C-13 C dipolar couplings.

Thureau P, Sturniolo S, Zilka M, Ziarelli F, Viel S, Yates JR, Mollica G.

Magn Reson Chem. 2019 May;57(5):256-264. doi: 10.1002/mrc.4848. Epub 2019 Mar 11.

PMID:
30735578
32.

The circadian E3 ligase complex SCFFBXL3+CRY targets TLK2.

Correia SP, Chan AB, Vaughan M, Zolboot N, Perea V, Huber AL, Kriebs A, Moresco JJ, Yates JR 3rd, Lamia KA.

Sci Rep. 2019 Jan 17;9(1):198. doi: 10.1038/s41598-018-36618-3.

33.

Mitogenic Signals Stimulate the CREB Coactivator CRTC3 through PP2A Recruitment.

Sonntag T, Ostojić J, Vaughan JM, Moresco JJ, Yoon YS, Yates JR 3rd, Montminy M.

iScience. 2019 Jan 25;11:134-145. doi: 10.1016/j.isci.2018.12.012. Epub 2018 Dec 19.

34.

A posttranslational modification code for CFTR maturation is altered in cystic fibrosis.

Pankow S, Bamberger C, Yates JR 3rd.

Sci Signal. 2019 Jan 1;12(562). pii: eaan7984. doi: 10.1126/scisignal.aan7984.

35.

Examining the neurochemical underpinnings of animal models of risky choice: Methodological and analytic considerations.

Yates JR.

Exp Clin Psychopharmacol. 2019 Apr;27(2):178-201. doi: 10.1037/pha0000239. Epub 2018 Dec 20. Review.

36.

From Synapse to Function: A Perspective on the Role of Neuroproteomics in Elucidating Mechanisms of Drug Addiction.

Natividad LA, Buczynski MW, McClatchy DB, Yates JR 3rd.

Proteomes. 2018 Dec 9;6(4). pii: E50. doi: 10.3390/proteomes6040050. Review.

37.

ComPIL 2.0: An Updated Comprehensive Metaproteomics Database.

Park SKR, Jung T, Thuy-Boun PS, Wang AY, Yates JR 3rd, Wolan DW.

J Proteome Res. 2019 Feb 1;18(2):616-622. doi: 10.1021/acs.jproteome.8b00722. Epub 2019 Jan 14.

PMID:
30525664
38.

Integrated In Vivo Quantitative Proteomics and Nutrient Tracing Reveals Age-Related Metabolic Rewiring of Pancreatic β Cell Function.

Wortham M, Benthuysen JR, Wallace M, Savas JN, Mulas F, Divakaruni AS, Liu F, Albert V, Taylor BL, Sui Y, Saez E, Murphy AN, Yates JR 3rd, Metallo CM, Sander M.

Cell Rep. 2018 Dec 4;25(10):2904-2918.e8. doi: 10.1016/j.celrep.2018.11.031.

39.

Multi-faceted computational assessment of risk and progression in oligodendroglioma implicates NOTCH and PI3K pathways.

Halani SH, Yousefi S, Velazquez Vega J, Rossi MR, Zhao Z, Amrollahi F, Holder CA, Baxter-Stoltzfus A, Eschbacher J, Griffith B, Olson JJ, Jiang T, Yates JR, Eberhart CG, Poisson LM, Cooper LAD, Brat DJ.

NPJ Precis Oncol. 2018 Nov 6;2:24. doi: 10.1038/s41698-018-0067-9. eCollection 2018.

40.

Zika Virus Infection of Human Mesenchymal Stem Cells Promotes Differential Expression of Proteins Linked to Several Neurological Diseases.

Beys-da-Silva WO, Rosa RL, Santi L, Berger M, Park SK, Campos AR, Terraciano P, Varela APM, Teixeira TF, Roehe PM, Quincozes-Santos A, Yates JR 3rd, Souza DO, Cirne-Lima EO, Guimarães JA.

Mol Neurobiol. 2019 Jul;56(7):4708-4717. doi: 10.1007/s12035-018-1417-x. Epub 2018 Oct 30.

PMID:
30377986
41.

Secretomic analysis of Beauveria bassiana related to cattle tick, Rhipicephalus microplus, infection.

Santi L, Coutinho-Rodrigues CJB, Berger M, Klein LAS, De Souza EM, Rosa RL, Guimarães JA, Yates JR 3rd, Perinotto WMS, Bittencourt VREP, Beys-da-Silva WO.

Folia Microbiol (Praha). 2019 May;64(3):361-372. doi: 10.1007/s12223-018-0659-3. Epub 2018 Oct 25.

PMID:
30361880
42.

DAF-16/FOXO and HLH-30/TFEB function as combinatorial transcription factors to promote stress resistance and longevity.

Lin XX, Sen I, Janssens GE, Zhou X, Fonslow BR, Edgar D, Stroustrup N, Swoboda P, Yates JR 3rd, Ruvkun G, Riedel CG.

Nat Commun. 2018 Oct 23;9(1):4400. doi: 10.1038/s41467-018-06624-0.

43.

Understanding molecular mechanisms of disease through spatial proteomics.

Pankow S, Martínez-Bartolomé S, Bamberger C, Yates JR.

Curr Opin Chem Biol. 2019 Feb;48:19-25. doi: 10.1016/j.cbpa.2018.09.016. Epub 2018 Oct 9. Review.

PMID:
30308467
44.

Innovation: Structural Proteomics Goes Global.

Yates JR 3rd.

J Proteome Res. 2018 Nov 2;17(11):3613. doi: 10.1021/acs.jproteome.8b00698. Epub 2018 Oct 10. No abstract available.

PMID:
30303008
45.

Social reinstatement: a rat model of peer-induced relapse.

Weiss VG, Yates JR, Beckmann JS, Hammerslag LR, Bardo MT.

Psychopharmacology (Berl). 2018 Dec;235(12):3391-3400. doi: 10.1007/s00213-018-5048-8. Epub 2018 Oct 6.

PMID:
30291403
46.

Proteomic analysis identifies highly expressed plasma membrane proteins for detection and therapeutic targeting of specific breast cancer subtypes.

Ziegler YS, Moresco JJ, Tu PG, Yates JR 3rd, Nardulli AM.

Clin Proteomics. 2018 Sep 19;15:30. doi: 10.1186/s12014-018-9206-0. eCollection 2018.

47.

Characterization of a novel antioxidant peptide from feather keratin hydrolysates.

Fontoura R, Daroit DJ, Corrêa APF, Moresco KS, Santi L, Beys-da-Silva WO, Yates JR 3rd, Moreira JCF, Brandelli A.

N Biotechnol. 2019 Mar 25;49:71-76. doi: 10.1016/j.nbt.2018.09.003. Epub 2018 Sep 14.

PMID:
30223040
48.

Proteins that control the geometry of microtubules at the ends of cilia.

Louka P, Vasudevan KK, Guha M, Joachimiak E, Wloga D, Tomasi RF, Baroud CN, Dupuis-Williams P, Galati DF, Pearson CG, Rice LM, Moresco JJ, Yates JR 3rd, Jiang YY, Lechtreck K, Dentler W, Gaertig J.

J Cell Biol. 2018 Dec 3;217(12):4298-4313. doi: 10.1083/jcb.201804141. Epub 2018 Sep 14.

49.

MIEF1 Microprotein Regulates Mitochondrial Translation.

Rathore A, Chu Q, Tan D, Martinez TF, Donaldson CJ, Diedrich JK, Yates JR 3rd, Saghatelian A.

Biochemistry. 2018 Sep 25;57(38):5564-5575. doi: 10.1021/acs.biochem.8b00726. Epub 2018 Sep 14.

50.

Differential processing of HIV envelope glycans on the virus and soluble recombinant trimer.

Cao L, Pauthner M, Andrabi R, Rantalainen K, Berndsen Z, Diedrich JK, Menis S, Sok D, Bastidas R, Park SR, Delahunty CM, He L, Guenaga J, Wyatt RT, Schief WR, Ward AB, Yates JR 3rd, Burton DR, Paulson JC.

Nat Commun. 2018 Sep 12;9(1):3693. doi: 10.1038/s41467-018-06121-4.

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