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Items: 31

1.

Collaborative Annotation Redefines Gene Sets for Crucial Phytopathogens.

Pedro H, Yates AD, Kersey PJ, De Silva NH.

Front Microbiol. 2019 Nov 7;10:2477. doi: 10.3389/fmicb.2019.02477. eCollection 2019.

2.

PHI-base: the pathogen-host interactions database.

Urban M, Cuzick A, Seager J, Wood V, Rutherford K, Venkatesh SY, De Silva N, Martinez MC, Pedro H, Yates AD, Hassani-Pak K, Hammond-Kosack KE.

Nucleic Acids Res. 2020 Jan 8;48(D1):D613-D620. doi: 10.1093/nar/gkz904.

PMID:
31733065
3.

Ensembl 2020.

Yates AD, Achuthan P, Akanni W, Allen J, Allen J, Alvarez-Jarreta J, Amode MR, Armean IM, Azov AG, Bennett R, Bhai J, Billis K, Boddu S, Marugán JC, Cummins C, Davidson C, Dodiya K, Fatima R, Gall A, Giron CG, Gil L, Grego T, Haggerty L, Haskell E, Hourlier T, Izuogu OG, Janacek SH, Juettemann T, Kay M, Lavidas I, Le T, Lemos D, Martinez JG, Maurel T, McDowall M, McMahon A, Mohanan S, Moore B, Nuhn M, Oheh DN, Parker A, Parton A, Patricio M, Sakthivel MP, Abdul Salam AI, Schmitt BM, Schuilenburg H, Sheppard D, Sycheva M, Szuba M, Taylor K, Thormann A, Threadgold G, Vullo A, Walts B, Winterbottom A, Zadissa A, Chakiachvili M, Flint B, Frankish A, Hunt SE, IIsley G, Kostadima M, Langridge N, Loveland JE, Martin FJ, Morales J, Mudge JM, Muffato M, Perry E, Ruffier M, Trevanion SJ, Cunningham F, Howe KL, Zerbino DR, Flicek P.

Nucleic Acids Res. 2020 Jan 8;48(D1):D682-D688. doi: 10.1093/nar/gkz966.

PMID:
31691826
4.

Ensembl Genomes 2020-enabling non-vertebrate genomic research.

Howe KL, Contreras-Moreira B, De Silva N, Maslen G, Akanni W, Allen J, Alvarez-Jarreta J, Barba M, Bolser DM, Cambell L, Carbajo M, Chakiachvili M, Christensen M, Cummins C, Cuzick A, Davis P, Fexova S, Gall A, George N, Gil L, Gupta P, Hammond-Kosack KE, Haskell E, Hunt SE, Jaiswal P, Janacek SH, Kersey PJ, Langridge N, Maheswari U, Maurel T, McDowall MD, Moore B, Muffato M, Naamati G, Naithani S, Olson A, Papatheodorou I, Patricio M, Paulini M, Pedro H, Perry E, Preece J, Rosello M, Russell M, Sitnik V, Staines DM, Stein J, Tello-Ruiz MK, Trevanion SJ, Urban M, Wei S, Ware D, Williams G, Yates AD, Flicek P.

Nucleic Acids Res. 2020 Jan 8;48(D1):D689-D695. doi: 10.1093/nar/gkz890.

5.

Eleven quick tips to build a usable REST API for life sciences.

Tarkowska A, Carvalho-Silva D, Cook CE, Turner E, Finn RD, Yates AD.

PLoS Comput Biol. 2018 Dec 13;14(12):e1006542. doi: 10.1371/journal.pcbi.1006542. eCollection 2018 Dec. No abstract available.

6.

Ensembl 2019.

Cunningham F, Achuthan P, Akanni W, Allen J, Amode MR, Armean IM, Bennett R, Bhai J, Billis K, Boddu S, Cummins C, Davidson C, Dodiya KJ, Gall A, Girón CG, Gil L, Grego T, Haggerty L, Haskell E, Hourlier T, Izuogu OG, Janacek SH, Juettemann T, Kay M, Laird MR, Lavidas I, Liu Z, Loveland JE, Marugán JC, Maurel T, McMahon AC, Moore B, Morales J, Mudge JM, Nuhn M, Ogeh D, Parker A, Parton A, Patricio M, Abdul Salam AI, Schmitt BM, Schuilenburg H, Sheppard D, Sparrow H, Stapleton E, Szuba M, Taylor K, Threadgold G, Thormann A, Vullo A, Walts B, Winterbottom A, Zadissa A, Chakiachvili M, Frankish A, Hunt SE, Kostadima M, Langridge N, Martin FJ, Muffato M, Perry E, Ruffier M, Staines DM, Trevanion SJ, Aken BL, Yates AD, Zerbino DR, Flicek P.

Nucleic Acids Res. 2019 Jan 8;47(D1):D745-D751. doi: 10.1093/nar/gky1113.

7.

ClinGen advancing genomic data-sharing standards as a GA4GH driver project.

Dolman L, Page A, Babb L, Freimuth RR, Arachchi H, Bizon C, Brush M, Fiume M, Haendel M, Hansen DP, Milosavljevic A, Patel RY, Pawliczek P, Yates AD, Rehm HL.

Hum Mutat. 2018 Nov;39(11):1686-1689. doi: 10.1002/humu.23625.

8.

Mechanisms of aphid adaptation to host plant resistance.

Yates AD, Michel A.

Curr Opin Insect Sci. 2018 Apr;26:41-49. doi: 10.1016/j.cois.2018.01.003. Epub 2018 Jan 31. Review.

PMID:
29764659
9.

A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae).

Schoville SD, Chen YH, Andersson MN, Benoit JB, Bhandari A, Bowsher JH, Brevik K, Cappelle K, Chen MM, Childers AK, Childers C, Christiaens O, Clements J, Didion EM, Elpidina EN, Engsontia P, Friedrich M, García-Robles I, Gibbs RA, Goswami C, Grapputo A, Gruden K, Grynberg M, Henrissat B, Jennings EC, Jones JW, Kalsi M, Khan SA, Kumar A, Li F, Lombard V, Ma X, Martynov A, Miller NJ, Mitchell RF, Munoz-Torres M, Muszewska A, Oppert B, Palli SR, Panfilio KA, Pauchet Y, Perkin LC, Petek M, Poelchau MF, Record É, Rinehart JP, Robertson HM, Rosendale AJ, Ruiz-Arroyo VM, Smagghe G, Szendrei Z, Thomas GWC, Torson AS, Vargas Jentzsch IM, Weirauch MT, Yates AD, Yocum GD, Yoon JS, Richards S.

Sci Rep. 2018 Jan 31;8(1):1931. doi: 10.1038/s41598-018-20154-1.

10.

Whole genome sequence of the soybean aphid, Aphis glycines.

Wenger JA, Cassone BJ, Legeai F, Johnston JS, Bansal R, Yates AD, Coates BS, Pavinato VA, Michel A.

Insect Biochem Mol Biol. 2017 Jan 22. pii: S0965-1748(17)30005-X. doi: 10.1016/j.ibmb.2017.01.005. [Epub ahead of print]

PMID:
28119199
11.

Family-provider alliance program in intensive care units.

Kim SC, Yates AD, Graham P, Brown CE.

Clin Nurs Res. 2011 Aug;20(3):245-62. doi: 10.1177/1054773811403471. Epub 2011 Apr 1.

PMID:
21460332
12.

Hepatitis C-related chronic liver disease among asymptomatic blood donors in the north west of England.

McLindon JP, Paver WK, Babbs C, Yates AD, McMahon RF, Love EM, Craske J, Christopher J, Warnes TW.

J Infect. 1995 May;30(3):253-9.

PMID:
7545715
13.

Identification of a subset of group B donors reactive with monoclonal anti-A reagent.

Beck ML, Yates AD, Hardman J, Kowalski MA.

Am J Clin Pathol. 1989 Nov;92(5):625-9.

PMID:
2510496
14.

Regulation of expression of carbohydrate blood group antigens.

Watkins WM, Greenwell P, Yates AD, Johnson PH.

Biochimie. 1988 Nov;70(11):1597-611. Review.

PMID:
3149525
15.

Structure, biosynthesis and genetics of the Sda antigen.

Donald AS, Soh CP, Yates AD, Feeney J, Morgan WT, Watkins WM.

Biochem Soc Trans. 1987 Aug;15(4):606-8. No abstract available.

PMID:
3119392
16.

Evidence that the gene for tuberous sclerosis is on chromosome 9.

Fryer AE, Chalmers A, Connor JM, Fraser I, Povey S, Yates AD, Yates JR, Osborne JP.

Lancet. 1987 Mar 21;1(8534):659-61.

PMID:
2882085
17.
18.

The human blood-group-Sda determinant: a terminal non-reducing carbohydrate structure in N-linked and mucin-type glycoproteins.

Donald AS, Yates AD, Soh CP, Morgan WT, Watkins WW.

Biochem Soc Trans. 1984 Aug;12(4):596-9. No abstract available.

PMID:
6208063
19.

Characterisation of a blood-group A-active tetrasaccharide synthesised by a blood-group B gene-specified glycosyltransferase.

Yates AD, Feeney J, Donald AS, Watkins WM.

Carbohydr Res. 1984 Jul 15;130:251-60.

PMID:
6434182
20.

A blood group Sda-active pentasaccharide isolated from Tamm-Horsfall urinary glycoprotein.

Donald AS, Yates AD, Soh CP, Morgan WT, Watkins WM.

Biochem Biophys Res Commun. 1983 Sep 15;115(2):625-31.

PMID:
6414473
22.

The biosynthesis of blood group B determinants by the blood group A gene-specified alpha-3-N-acetyl-D-galactosaminyltransferase.

Yates AD, Watkins WM.

Biochem Biophys Res Commun. 1982 Dec 15;109(3):958-65. No abstract available.

PMID:
6186256
23.

Human salivary fucosyltransferases : evidence for two distinct alpha-3-L-fucosyltransferase activities one or which is associated with the Lewis blood group Le gene.

Johnson PH, Yates AD, Watkins WM.

Biochem Biophys Res Commun. 1981 Jun;100(4):1611-8. No abstract available.

PMID:
7295318
24.

Blood group antigens and the enzymes involved in their synthesis: past and present.

Watkins WM, Yates AD, Greenwell P.

Biochem Soc Trans. 1981 Jun;9(3):186-91. No abstract available.

PMID:
6168499
25.

A human dispermic chimaera first suspected from analyses of the blood group gene-specified glycosyltransferases.

Watkins WM, Yates AD, Greenwell P, Bird GW, Gibson M, Roy TC, Wingham J, Loeb W.

J Immunogenet. 1981 Apr;8(2):113-28.

PMID:
6785361
26.

The genetic and enzymic regulation of the synthesis of the A and B determinants in the ABO blood group system.

Watkins WM, Greenwell P, Yates AD.

Immunol Commun. 1981;10(2):83-100. Review.

PMID:
6169633
27.

Blood group A and B transferase levels in serum and red cells of human chimaeras.

Watkins WM, Greenwell P, Yates AD.

Rev Fr Transfus Immunohematol. 1980 Nov;23(5):531-44. No abstract available.

PMID:
7193342
28.

Contribution of blood group A and B gene specified glycosyltransferase assays to an understanding of human chimaeras.

Watkins WM, Yates AD, Greenwell P.

Acta Haematol Pol. 1980 Apr-Jun;11(2):83-6. No abstract available.

PMID:
7191613
29.

The cis AB phenotype in three generations of one family: serological, enzymatic and cytogenetic studies.

Sabo BH, Bush M, German J, Carne LR, Yates AD, Watkins WM.

J Immunogenet. 1978 Apr;5(2):87-106. No abstract available.

PMID:
659911
31.

The nature of the human blood group P1 determinant.

Cory HT, Yates AD, Donald AS, Watkins WM, Morgan WT.

Biochem Biophys Res Commun. 1974 Dec 23;61(4):1289-96. No abstract available.

PMID:
4477014

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