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Items: 1 to 50 of 137

1.

Anisotropy of dodecahedral water cages for guest gas occupancy in semiclathrate hydrates.

Yuhara D, Yasuoka K, Takeya S, Muromachi S.

Chem Commun (Camb). 2019 Aug 20;55(68):10150-10153. doi: 10.1039/c9cc05009d.

PMID:
31389425
2.

Separation of water-alcohol mixtures using carbon nanotubes under an electric field.

Winarto, Yamamoto E, Yasuoka K.

Phys Chem Chem Phys. 2019 Jul 17;21(28):15431-15438. doi: 10.1039/c9cp01799b.

PMID:
31282508
3.

Late-Onset Circulatory Collapse and Risk of Cerebral Palsy in Extremely Preterm Infants.

Yasuoka K, Inoue H, Egami N, Ochiai M, Tanaka K, Sawano T, Kurata H, Ichiyama M, Fujiyoshi J, Matsushita Y, Sakai Y, Ohga S; Neonatal Research Network of Japan.

J Pediatr. 2019 Sep;212:117-123.e4. doi: 10.1016/j.jpeds.2019.05.033. Epub 2019 Jun 20.

PMID:
31229321
4.

Detection of molecular behavior that characterizes systems using a deep learning approach.

Endo K, Yuhara D, Tomobe K, Yasuoka K.

Nanoscale. 2019 May 28;11(20):10064-10071. doi: 10.1039/c9nr00219g. Epub 2019 May 15.

PMID:
31089600
5.

Molecular Dynamic Simulations to Probe Water Permeation Pathways of GPCRs.

Tomobe K, Yamamoto E, Yasuoka K.

Methods Mol Biol. 2019;1947:21-30. doi: 10.1007/978-1-4939-9121-1_2.

PMID:
30969409
6.

Cage occupancies, lattice constants, and guest chemical potentials for structure II hydrogen clathrate hydrate from Gibbs ensemble Monte Carlo simulations.

Brumby PE, Yuhara D, Hasegawa T, Wu DT, Sum AK, Yasuoka K.

J Chem Phys. 2019 Apr 7;150(13):134503. doi: 10.1063/1.5084785.

PMID:
30954046
7.

Ordering in clusters of uniaxial anisotropic particles during homogeneous nucleation and growth.

Nozawa T, Brumby PE, Ayuba S, Yasuoka K.

J Chem Phys. 2019 Feb 7;150(5):054903. doi: 10.1063/1.5064410.

PMID:
30736692
8.

A nationwide survey on tracheostomy for very-low-birth-weight infants in Japan.

Kurata H, Ochiai M, Inoue H, Ichiyama M, Yasuoka K, Fujiyoshi J, Matsushita Y, Honjo S, Sakai Y, Ohga S; Neonatal Research Network of Japan.

Pediatr Pulmonol. 2019 Jan;54(1):53-60. doi: 10.1002/ppul.24200. Epub 2018 Dec 7.

PMID:
30525314
9.

Neurodevelopmental Outcomes in Infants With Birth Weight ≤500 g at 3 Years of Age.

Inoue H, Ochiai M, Sakai Y, Yasuoka K, Tanaka K, Ichiyama M, Kurata H, Fujiyoshi J, Matsushita Y, Honjo S, Nonaka K, Taguchi T, Kato K, Ohga S; Neonatal Research Network of Japan.

Pediatrics. 2018 Dec;142(6). pii: e20174286. doi: 10.1542/peds.2017-4286. Epub 2018 Nov 16.

PMID:
30446630
10.

Effect of Central Longitudinal Dipole Interactions on Chiral Liquid-Crystal Phases.

Nozawa T, Brumby PE, Yasuoka K.

Int J Mol Sci. 2018 Sep 11;19(9). pii: E2715. doi: 10.3390/ijms19092715.

11.

A fast and accurate computational method for the linear-combination-based isotropic periodic sum.

Takahashi KZ, Nozawa T, Yasuoka K.

Sci Rep. 2018 Aug 8;8(1):11880. doi: 10.1038/s41598-018-30364-2.

12.

Kinetic analysis of homogeneous droplet nucleation using large-scale molecular dynamics simulations.

Ayuba S, Suh D, Nomura K, Ebisuzaki T, Yasuoka K.

J Chem Phys. 2018 Jul 28;149(4):044504. doi: 10.1063/1.5037647.

PMID:
30068205
13.

Molecular Dynamics Simulation of Ice Crystal Growth Inhibition by Hexadecyl-trimethyl-ammonium Bromide.

Shimazu N, Takaiwa D, Suh D, Kawaguchi T, Fuse T, Kaneko T, Yasuoka K.

Langmuir. 2018 Aug 7;34(31):9330-9335. doi: 10.1021/acs.langmuir.8b01903. Epub 2018 Jul 26.

PMID:
29989825
14.

Analysis of three-phase equilibrium conditions for methane hydrate by isometric-isothermal molecular dynamics simulations.

Yuhara D, Brumby PE, Wu DT, Sum AK, Yasuoka K.

J Chem Phys. 2018 May 14;148(18):184501. doi: 10.1063/1.5016609.

PMID:
29764125
15.

Phase behaviors of deeply supercooled bilayer water unseen in bulk water.

Kaneko T, Bai J, Akimoto T, Francisco JS, Yasuoka K, Zeng XC.

Proc Natl Acad Sci U S A. 2018 May 8;115(19):4839-4844. doi: 10.1073/pnas.1802342115. Epub 2018 Apr 24.

16.

Critical test of isotropic periodic sum techniques with group-based cut-off schemes.

Nozawa T, Yasuoka K, Takahashi KZ.

Sci Rep. 2018 Mar 8;8(1):4185. doi: 10.1038/s41598-018-22514-3.

17.

Structural determinants in the bulk heterojunction.

Acocella A, Höfinger S, Haunschmid E, Pop SC, Narumi T, Yasuoka K, Yasui M, Zerbetto F.

Phys Chem Chem Phys. 2018 Feb 21;20(8):5708-5720. doi: 10.1039/c7cp08435h.

PMID:
29410990
18.

Detection of Anomalous Dynamics for a Single Water Molecule.

Tomobe K, Yasuoka K.

J Chem Theory Comput. 2018 Mar 13;14(3):1177-1185. doi: 10.1021/acs.jctc.7b01104. Epub 2018 Feb 14.

PMID:
29357244
19.

Origin of the blueshift of water molecules at interfaces of hydrophilic cyclic compounds.

Tomobe K, Yamamoto E, Kojić D, Sato Y, Yasui M, Yasuoka K.

Sci Adv. 2017 Dec 22;3(12):e1701400. doi: 10.1126/sciadv.1701400. eCollection 2017 Dec.

20.

Cytological features in eight patients with ALK-rearranged lung cancer.

Kuroda N, Ohara M, Wada Y, Yasuoka K, Mizuno K, Yorita K, Obayashi C, Takeuchi K.

Diagn Cytopathol. 2018 Jun;46(6):516-519. doi: 10.1002/dc.23879. Epub 2017 Dec 27.

PMID:
29280331
21.

Cytological findings of ROS1-rearranged lung adenocarcinoma.

Kuroda N, Tamiya H, Nakatani K, Ide H, Wada Y, Yasuoka K, Ohara M, Mizuno K, Yorita K, Takeuchi K.

Diagn Cytopathol. 2018 Apr;46(4):336-339. doi: 10.1002/dc.23845. Epub 2017 Oct 27.

PMID:
29076659
22.

Onset of static and dynamic universality among molecular models of polymers.

Takahashi KZ, Nishimura R, Yamato N, Yasuoka K, Masubuchi Y.

Sci Rep. 2017 Sep 28;7(1):12379. doi: 10.1038/s41598-017-08501-0.

23.

Molecular Dynamics Simulation of Water Nanodroplet Bounce Back from Flat and Nanopillared Surface.

Koishi T, Yasuoka K, Zeng XC.

Langmuir. 2017 Oct 3;33(39):10184-10192. doi: 10.1021/acs.langmuir.7b02149. Epub 2017 Sep 20.

PMID:
28876073
24.

Early Mortality and Morbidity in Infants with Birth Weight of 500 Grams or Less in Japan.

Inoue H, Ochiai M, Yasuoka K, Tanaka K, Kurata H, Fujiyoshi J, Matsushita Y, Suga S, Nonaka K, Taguchi T, Kato K, Ohga S; Neonatal Research Network of Japan (NRNJ).

J Pediatr. 2017 Nov;190:112-117.e3. doi: 10.1016/j.jpeds.2017.05.017. Epub 2017 Jun 1.

25.

Effects of temperature, concentration, and isomer on the hydration structure in monosaccharide solutions.

Tomobe K, Yamamoto E, Yasui M, Yasuoka K.

Phys Chem Chem Phys. 2017 Jun 14;19(23):15239-15246. doi: 10.1039/c7cp02392h.

PMID:
28569306
26.

Successful Liver Transplantation for Transient Abnormal Myelopoiesis-Associated Liver Failure.

Yasuoka K, Inoue H, Tanaka K, Fujiyoshi J, Matsushita Y, Ochiai M, Koga Y, Matsuura T, Taguchi T, Ohga S.

Neonatology. 2017;112(2):159-162. doi: 10.1159/000474930. Epub 2017 May 31.

PMID:
28558383
27.

Water permeation through the internal water pathway in activated GPCR rhodopsin.

Tomobe K, Yamamoto E, Kholmurodov K, Yasuoka K.

PLoS One. 2017 May 11;12(5):e0176876. doi: 10.1371/journal.pone.0176876. eCollection 2017.

28.

Evidence of low-density and high-density liquid phases and isochore end point for water confined to carbon nanotube.

Nomura K, Kaneko T, Bai J, Francisco JS, Yasuoka K, Zeng XC.

Proc Natl Acad Sci U S A. 2017 Apr 18;114(16):4066-4071. doi: 10.1073/pnas.1701609114. Epub 2017 Apr 3.

29.

Dynamic interactions between a membrane binding protein and lipids induce fluctuating diffusivity.

Yamamoto E, Akimoto T, Kalli AC, Yasuoka K, Sansom MS.

Sci Adv. 2017 Jan 20;3(1):e1601871. doi: 10.1126/sciadv.1601871. eCollection 2017 Jan.

30.

Molecular Dynamics Simulations for Resolving Scaling Laws of Polyethylene Melts.

Takahashi KZ, Nishimura R, Yasuoka K, Masubuchi Y.

Polymers (Basel). 2017 Jan 12;9(1). pii: E24. doi: 10.3390/polym9010024.

31.

Separation of water-ethanol solutions with carbon nanotubes and electric fields.

Winarto, Takaiwa D, Yamamoto E, Yasuoka K.

Phys Chem Chem Phys. 2016 Dec 7;18(48):33310-33319.

PMID:
27897278
32.

Self-Assembly of Janus Oligomers into Onion-like Vesicles with Layer-by-Layer Water Discharging Capability: A Minimalist Model.

Arai N, Yasuoka K, Zeng XC.

ACS Nano. 2016 Aug 23;10(8):8026-37. doi: 10.1021/acsnano.6b04087. Epub 2016 Aug 1.

PMID:
27466700
33.

Interactions of Pleckstrin Homology Domains with Membranes: Adding Back the Bilayer via High-Throughput Molecular Dynamics.

Yamamoto E, Kalli AC, Yasuoka K, Sansom MSP.

Structure. 2016 Aug 2;24(8):1421-1431. doi: 10.1016/j.str.2016.06.002. Epub 2016 Jul 14.

34.

Self-assembly behaviours of primitive and modern lipid membrane solutions: a coarse-grained molecular simulation study.

Arai N, Yoshimoto Y, Yasuoka K, Ebisuzaki T.

Phys Chem Chem Phys. 2016 Jul 28;18(28):19426-32. doi: 10.1039/c6cp02380k. Epub 2016 Jul 5.

PMID:
27378100
35.

Condensation on nanorods by molecular dynamics.

Suh D, Yasuoka K.

J Chem Phys. 2016 Jun 28;144(24):244702. doi: 10.1063/1.4954240.

PMID:
27369528
36.

Anomalous Dynamics of a Lipid Recognition Protein on a Membrane Surface.

Yamamoto E, Kalli AC, Akimoto T, Yasuoka K, Sansom MS.

Sci Rep. 2015 Dec 14;5:18245. doi: 10.1038/srep18245.

37.

Approaches for Controlling the Temperature and Pressure Range in Generalized NPT Ensembles.

Doi H, Yasuoka K.

J Chem Theory Comput. 2015 Sep 8;11(9):4370-6. doi: 10.1021/acs.jctc.5b00195. Epub 2015 Aug 11.

PMID:
26575930
38.

Comparison of the accuracy of periodic reaction field methods in molecular dynamics simulations of a model liquid crystal system.

Nozawa T, Takahashi KZ, Narumi T, Yasuoka K.

J Comput Chem. 2015 Dec 15;36(32):2406-11. doi: 10.1002/jcc.24222. Epub 2015 Nov 3.

PMID:
26525311
39.

Water–methanol separation with carbon nanotubes and electric fields.

Winarto, Takaiwa D, Yamamoto E, Yasuoka K.

Nanoscale. 2015 Aug 7;7(29):12659-65.

PMID:
26397004
40.

A molecular dynamics study of guest-host hydrogen bonding in alcohol clathrate hydrates.

Hiratsuka M, Ohmura R, Sum AK, Alavi S, Yasuoka K.

Phys Chem Chem Phys. 2015 May 21;17(19):12639-47. doi: 10.1039/c4cp05732e.

PMID:
25905113
41.

Nucleation rate analysis of methane hydrate from molecular dynamics simulations.

Yuhara D, Barnes BC, Suh D, Knott BC, Beckham GT, Yasuoka K, Wu DT, Sum AK.

Faraday Discuss. 2015;179:463-74. doi: 10.1039/c4fd00219a. Epub 2015 Apr 16.

PMID:
25876773
42.

Structures of water molecules in carbon nanotubes under electric fields.

Winarto, Takaiwa D, Yamamoto E, Yasuoka K.

J Chem Phys. 2015 Mar 28;142(12):124701. doi: 10.1063/1.4914462.

PMID:
25833597
43.

[Development of a novel oral jelly formulation for elderly patients].

Harada T, Yasuoka K, Sakurai M, Murase T, Owaki T.

Yakugaku Zasshi. 2015;135(2):249-54. doi: 10.1248/yakushi.14-00228-5. Review. Japanese.

44.

Origin of 1/f noise in hydration dynamics on lipid membrane surfaces.

Yamamoto E, Akimoto T, Yasui M, Yasuoka K.

Sci Rep. 2015 Mar 6;5:8876. doi: 10.1038/srep08876.

45.

1/ f Fluctuations of amino acids regulate water transportation in aquaporin 1.

Yamamoto E, Akimoto T, Hirano Y, Yasui M, Yasuoka K.

Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Feb;89(2):022718. Epub 2014 Feb 21.

PMID:
25353519
46.

Water confined in the local field of ions.

Kojić D, Tsenkova R, Tomobe K, Yasuoka K, Yasui M.

Chemphyschem. 2014 Dec 15;15(18):4077-86. doi: 10.1002/cphc.201402381. Epub 2014 Oct 5.

PMID:
25284338
47.

Observation of interstitial molecular hydrogen in clathrate hydrates.

Grim RG, Barnes BC, Lafond PG, Kockelmann WA, Keen DA, Soper AK, Hiratsuka M, Yasuoka K, Koh CA, Sum AK.

Angew Chem Int Ed Engl. 2014 Sep 26;53(40):10710-3. doi: 10.1002/anie.201406546. Epub 2014 Aug 19.

PMID:
25139731
48.

RBE and OER within the spread-out Bragg peak for proton beam therapy: in vitro study at the Proton Medical Research Center at the University of Tsukuba.

Kanemoto A, Hirayama R, Moritake T, Furusawa Y, Sun L, Sakae T, Kuno A, Terunuma T, Yasuoka K, Mori Y, Tsuboi K, Sakurai H.

J Radiat Res. 2014 Sep;55(5):1028-32. doi: 10.1093/jrr/rru043. Epub 2014 May 29.

49.

Liquid-solid and solid-solid phase transition of monolayer water: high-density rhombic monolayer ice.

Kaneko T, Bai J, Yasuoka K, Mitsutake A, Zeng XC.

J Chem Phys. 2014 May 14;140(18):184507. doi: 10.1063/1.4874696.

PMID:
24832288
50.

Origin of subdiffusion of water molecules on cell membrane surfaces.

Yamamoto E, Akimoto T, Yasui M, Yasuoka K.

Sci Rep. 2014 Apr 17;4:4720. doi: 10.1038/srep04720.

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