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Items: 28

1.

Soil Functional Zone Management: A Vehicle for Enhancing Production and Soil Ecosystem Services in Row-Crop Agroecosystems.

Williams A, Kane DA, Ewing PM, Atwood LW, Jilling A, Li M, Lou Y, Davis AS, Grandy AS, Huerd SC, Hunter MC, Koide RT, Mortensen DA, Smith RG, Snapp SS, Spokas KA, Yannarell AC, Jordan NR.

Front Plant Sci. 2016 Feb 5;7:65. doi: 10.3389/fpls.2016.00065. eCollection 2016.

2.

Functional potential of soil microbial communities in the maize rhizosphere.

Li X, Rui J, Xiong J, Li J, He Z, Zhou J, Yannarell AC, Mackie RI.

PLoS One. 2014 Nov 10;9(11):e112609. doi: 10.1371/journal.pone.0112609. eCollection 2014.

3.

Enrichment of specific bacterial and eukaryotic microbes in the rhizosphere of switchgrass (Panicum virgatum L.) through root exudates.

Mao Y, Li X, Smyth EM, Yannarell AC, Mackie RI.

Environ Microbiol Rep. 2014 Jun;6(3):293-306. doi: 10.1111/1758-2229.12152. Epub 2014 Mar 19.

PMID:
24983534
4.

Influence of shrub encroachment on the soil microbial community composition of remnant hill prairies.

Yannarell AC, Menning SE, Beck AM.

Microb Ecol. 2014 May;67(4):897-906. doi: 10.1007/s00248-014-0369-6. Epub 2014 Feb 4.

5.

An affinity-effect relationship for microbial communities in plant-soil feedback loops.

Lou Y, Clay SA, Davis AS, Dille A, Felix J, Ramirez AH, Sprague CL, Yannarell AC.

Microb Ecol. 2014 May;67(4):866-76. doi: 10.1007/s00248-013-0349-2. Epub 2014 Jan 9.

6.

Halomonas sulfidaeris-dominated microbial community inhabits a 1.8 km-deep subsurface Cambrian Sandstone reservoir.

Dong Y, Kumar CG, Chia N, Kim PJ, Miller PA, Price ND, Cann IK, Flynn TM, Sanford RA, Krapac IG, Locke RA 2nd, Hong PY, Tamaki H, Liu WT, Mackie RI, Hernandez AG, Wright CL, Mikel MA, Walker JL, Sivaguru M, Fried G, Yannarell AC, Fouke BW.

Environ Microbiol. 2014 Jun;16(6):1695-708. doi: 10.1111/1462-2920.12325. Epub 2013 Dec 12.

7.

Monitoring the perturbation of soil and groundwater microbial communities due to pig production activities.

Hong PY, Yannarell AC, Dai Q, Ekizoglu M, Mackie RI.

Appl Environ Microbiol. 2013 Apr;79(8):2620-9. doi: 10.1128/AEM.03760-12. Epub 2013 Feb 8.

8.

Impact of different bioenergy crops on N-cycling bacterial and archaeal communities in soil.

Mao Y, Yannarell AC, Davis SC, Mackie RI.

Environ Microbiol. 2013 Mar;15(3):928-42. doi: 10.1111/j.1462-2920.2012.02844.x. Epub 2012 Aug 14.

PMID:
22891790
9.

Changes in N-transforming archaea and bacteria in soil during the establishment of bioenergy crops.

Mao Y, Yannarell AC, Mackie RI.

PLoS One. 2011;6(9):e24750. doi: 10.1371/journal.pone.0024750. Epub 2011 Sep 14.

10.

Fecal microbiota of calves in the clinical setting: effect of penicillin treatment.

Grønvold AM, Mao Y, L'Abée-Lund TM, Sørum H, Sivertsen T, Yannarell AC, Mackie RI.

Vet Microbiol. 2011 Dec 15;153(3-4):354-60. doi: 10.1016/j.vetmic.2011.05.040. Epub 2011 Jun 1.

PMID:
21705160
11.

Soil Bacteria and Fungi Respond on Different Spatial Scales to Invasion by the Legume Lespedeza cuneata.

Yannarell AC, Busby RR, Denight ML, Gebhart DL, Taylor SJ.

Front Microbiol. 2011 Jun 3;2:127. doi: 10.3389/fmicb.2011.00127. eCollection 2011.

12.

V-REVCOMP: automated high-throughput detection of reverse complementary 16S rRNA gene sequences in large environmental and taxonomic datasets.

Hartmann M, Howes CG, Veldre V, Schneider S, Vaishampayan PA, Yannarell AC, Quince C, Johansson P, Björkroth KJ, Abarenkov K, Hallam SJ, Mohn WW, Nilsson RH.

FEMS Microbiol Lett. 2011 Jun;319(2):140-5. doi: 10.1111/j.1574-6968.2011.02274.x. Epub 2011 Apr 27.

13.

Fecal microbiota of horses in the clinical setting: potential effects of penicillin and general anesthesia.

Grønvold AM, L'Abée-Lund TM, Strand E, Sørum H, Yannarell AC, Mackie RI.

Vet Microbiol. 2010 Oct 26;145(3-4):366-72. doi: 10.1016/j.vetmic.2010.03.023. Epub 2010 Apr 13.

PMID:
20434851
14.

Changes in fecal microbiota of healthy dogs administered amoxicillin.

Grønvold AM, L'abée-Lund TM, Sørum H, Skancke E, Yannarell AC, Mackie RI.

FEMS Microbiol Ecol. 2010 Feb;71(2):313-26. doi: 10.1111/j.1574-6941.2009.00808.x. Epub 2009 Nov 4.

15.

Molecular ecology of macrolide-lincosamide-streptogramin B methylases in waste lagoons and subsurface waters associated with swine production.

Koike S, Aminov RI, Yannarell AC, Gans HD, Krapac IG, Chee-Sanford JC, Mackie RI.

Microb Ecol. 2010 Apr;59(3):487-98. doi: 10.1007/s00248-009-9610-0. Epub 2009 Nov 19.

PMID:
19924466
16.

Evaluation of swine-specific PCR assays used for fecal source tracking and analysis of molecular diversity of swine-specific "bacteroidales" populations.

Lamendella R, Santo Domingo JW, Yannarell AC, Ghosh S, Di Giovanni G, Mackie RI, Oerther DB.

Appl Environ Microbiol. 2009 Sep;75(18):5787-96. doi: 10.1128/AEM.00448-09. Epub 2009 Jul 24.

17.

Fate and transport of antibiotic residues and antibiotic resistance genes following land application of manure waste.

Chee-Sanford JC, Mackie RI, Koike S, Krapac IG, Lin YF, Yannarell AC, Maxwell S, Aminov RI.

J Environ Qual. 2009 Apr 27;38(3):1086-108. doi: 10.2134/jeq2008.0128. Print 2009 May-Jun. Review.

PMID:
19398507
18.

Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases.

Brulc JM, Antonopoulos DA, Miller ME, Wilson MK, Yannarell AC, Dinsdale EA, Edwards RE, Frank ED, Emerson JB, Wacklin P, Coutinho PM, Henrissat B, Nelson KE, White BA.

Proc Natl Acad Sci U S A. 2009 Feb 10;106(6):1948-53. doi: 10.1073/pnas.0806191105. Epub 2009 Jan 30.

19.

Synchrony in aquatic microbial community dynamics.

Kent AD, Yannarell AC, Rusak JA, Triplett EW, McMahon KD.

ISME J. 2007 May;1(1):38-47.

PMID:
18043612
20.

Effects of salinity and light on organic carbon and nitrogen uptake in a hypersaline microbial mat.

Yannarell AC, Paerl HW.

FEMS Microbiol Ecol. 2007 Dec;62(3):345-53. Epub 2007 Oct 3.

21.

Monitoring and source tracking of tetracycline resistance genes in lagoons and groundwater adjacent to swine production facilities over a 3-year period.

Koike S, Krapac IG, Oliver HD, Yannarell AC, Chee-Sanford JC, Aminov RI, Mackie RI.

Appl Environ Microbiol. 2007 Aug;73(15):4813-23. Epub 2007 Jun 1.

22.

Disturbance and recovery of microbial community structure and function following Hurricane Frances.

Yannarell AC, Steppe TF, Paerl HW.

Environ Microbiol. 2007 Mar;9(3):576-83.

PMID:
17298358
23.
24.

Annual patterns in bacterioplankton community variability in a humic lake.

Kent AD, Jones SE, Yannarell AC, Graham JM, Lauster GH, Kratz TK, Triplett EW.

Microb Ecol. 2004 Nov;48(4):550-60. Epub 2004 Oct 28.

PMID:
15696388
25.

Seasonal dynamics of phytoplankton and planktonic protozoan communities in a northern temperate humic lake: diversity in a dinoflagellate dominated system.

Graham JM, Kent AD, Lauster GH, Yannarell AC, Graham LE, Triplett EW.

Microb Ecol. 2004 Nov;48(4):528-40. Epub 2004 Oct 28.

PMID:
15696386
26.

Geographic and environmental sources of variation in lake bacterial community composition.

Yannarell AC, Triplett EW.

Appl Environ Microbiol. 2005 Jan;71(1):227-39.

27.
28.

Temporal patterns in bacterial communities in three temperate lakes of different trophic status.

Yannarell AC, Kent AD, Lauster GH, Kratz TK, Triplett EW.

Microb Ecol. 2003 Nov;46(4):391-405. Epub 2003 Aug 14.

PMID:
12904915

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