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Items: 47

1.

Aging and neurodegeneration are associated with increased mutations in single human neurons.

Lodato MA, Rodin RE, Bohrson CL, Coulter ME, Barton AR, Kwon M, Sherman MA, Vitzthum CM, Luquette LJ, Yandava CN, Yang P, Chittenden TW, Hatem NE, Ryu SC, Woodworth MB, Park PJ, Walsh CA.

Science. 2018 Feb 2;359(6375):555-559. doi: 10.1126/science.aao4426. Epub 2017 Dec 7. Erratum in: Science. 2018 Jul 6;361(6397):.

2.

Transcriptional Regulator CNOT3 Defines an Aggressive Colorectal Cancer Subtype.

Cejas P, Cavazza A, Yandava CN, Moreno V, Horst D, Moreno-Rubio J, Burgos E, Mendiola M, Taing L, Goel A, Feliu J, Shivdasani RA.

Cancer Res. 2017 Feb 1;77(3):766-779. doi: 10.1158/0008-5472.CAN-16-1346. Epub 2016 Nov 29.

3.

Immunoglobulin gene insertions and deletions in the affinity maturation of HIV-1 broadly reactive neutralizing antibodies.

Kepler TB, Liao HX, Alam SM, Bhaskarabhatla R, Zhang R, Yandava C, Stewart S, Anasti K, Kelsoe G, Parks R, Lloyd KE, Stolarchuk C, Pritchett J, Solomon E, Friberg E, Morris L, Karim SS, Cohen MS, Walter E, Moody MA, Wu X, Altae-Tran HR, Georgiev IS, Kwong PD, Boyd SD, Fire AZ, Mascola JR, Haynes BF.

Cell Host Microbe. 2014 Sep 10;16(3):304-13. doi: 10.1016/j.chom.2014.08.006.

4.

Topoisomerases facilitate transcription of long genes linked to autism.

King IF, Yandava CN, Mabb AM, Hsiao JS, Huang HS, Pearson BL, Calabrese JM, Starmer J, Parker JS, Magnuson T, Chamberlain SJ, Philpot BD, Zylka MJ.

Nature. 2013 Sep 5;501(7465):58-62. doi: 10.1038/nature12504. Epub 2013 Aug 28.

5.

Evolutionary dynamics of the accessory genome of Listeria monocytogenes.

den Bakker HC, Desjardins CA, Griggs AD, Peters JE, Zeng Q, Young SK, Kodira CD, Yandava C, Hepburn TA, Haas BJ, Birren BW, Wiedmann M.

PLoS One. 2013 Jun 25;8(6):e67511. doi: 10.1371/journal.pone.0067511. Print 2013.

6.

Comparative genomics of a plant-pathogenic fungus, Pyrenophora tritici-repentis, reveals transduplication and the impact of repeat elements on pathogenicity and population divergence.

Manning VA, Pandelova I, Dhillon B, Wilhelm LJ, Goodwin SB, Berlin AM, Figueroa M, Freitag M, Hane JK, Henrissat B, Holman WH, Kodira CD, Martin J, Oliver RP, Robbertse B, Schackwitz W, Schwartz DC, Spatafora JW, Turgeon BG, Yandava C, Young S, Zhou S, Zeng Q, Grigoriev IV, Ma LJ, Ciuffetti LM.

G3 (Bethesda). 2013 Jan;3(1):41-63. doi: 10.1534/g3.112.004044. Epub 2013 Jan 1.

7.

Rapid diversification of coevolving marine Synechococcus and a virus.

Marston MF, Pierciey FJ Jr, Shepard A, Gearin G, Qi J, Yandava C, Schuster SC, Henn MR, Martiny JB.

Proc Natl Acad Sci U S A. 2012 Mar 20;109(12):4544-9. doi: 10.1073/pnas.1120310109. Epub 2012 Mar 2.

8.

Comparative genomic analysis of human fungal pathogens causing paracoccidioidomycosis.

Desjardins CA, Champion MD, Holder JW, Muszewska A, Goldberg J, Bailão AM, Brigido MM, Ferreira ME, Garcia AM, Grynberg M, Gujja S, Heiman DI, Henn MR, Kodira CD, León-Narváez H, Longo LV, Ma LJ, Malavazi I, Matsuo AL, Morais FV, Pereira M, Rodríguez-Brito S, Sakthikumar S, Salem-Izacc SM, Sykes SM, Teixeira MM, Vallejo MC, Walter ME, Yandava C, Young S, Zeng Q, Zucker J, Felipe MS, Goldman GH, Haas BJ, McEwen JG, Nino-Vega G, Puccia R, San-Blas G, Soares CM, Birren BW, Cuomo CA.

PLoS Genet. 2011 Oct;7(10):e1002345. doi: 10.1371/journal.pgen.1002345. Epub 2011 Oct 27.

9.

Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea.

Amselem J, Cuomo CA, van Kan JA, Viaud M, Benito EP, Couloux A, Coutinho PM, de Vries RP, Dyer PS, Fillinger S, Fournier E, Gout L, Hahn M, Kohn L, Lapalu N, Plummer KM, Pradier JM, Quévillon E, Sharon A, Simon A, ten Have A, Tudzynski B, Tudzynski P, Wincker P, Andrew M, Anthouard V, Beever RE, Beffa R, Benoit I, Bouzid O, Brault B, Chen Z, Choquer M, Collémare J, Cotton P, Danchin EG, Da Silva C, Gautier A, Giraud C, Giraud T, Gonzalez C, Grossetete S, Güldener U, Henrissat B, Howlett BJ, Kodira C, Kretschmer M, Lappartient A, Leroch M, Levis C, Mauceli E, Neuvéglise C, Oeser B, Pearson M, Poulain J, Poussereau N, Quesneville H, Rascle C, Schumacher J, Ségurens B, Sexton A, Silva E, Sirven C, Soanes DM, Talbot NJ, Templeton M, Yandava C, Yarden O, Zeng Q, Rollins JA, Lebrun MH, Dickman M.

PLoS Genet. 2011 Aug;7(8):e1002230. doi: 10.1371/journal.pgen.1002230. Epub 2011 Aug 18.

10.

Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments.

Sullivan MB, Huang KH, Ignacio-Espinoza JC, Berlin AM, Kelly L, Weigele PR, DeFrancesco AS, Kern SE, Thompson LR, Young S, Yandava C, Fu R, Krastins B, Chase M, Sarracino D, Osburne MS, Henn MR, Chisholm SW.

Environ Microbiol. 2010 Nov;12(11):3035-56. doi: 10.1111/j.1462-2920.2010.02280.x.

11.

A catalog of reference genomes from the human microbiome.

Human Microbiome Jumpstart Reference Strains Consortium, Nelson KE, Weinstock GM, Highlander SK, Worley KC, Creasy HH, Wortman JR, Rusch DB, Mitreva M, Sodergren E, Chinwalla AT, Feldgarden M, Gevers D, Haas BJ, Madupu R, Ward DV, Birren BW, Gibbs RA, Methe B, Petrosino JF, Strausberg RL, Sutton GG, White OR, Wilson RK, Durkin S, Giglio MG, Gujja S, Howarth C, Kodira CD, Kyrpides N, Mehta T, Muzny DM, Pearson M, Pepin K, Pati A, Qin X, Yandava C, Zeng Q, Zhang L, Berlin AM, Chen L, Hepburn TA, Johnson J, McCorrison J, Miller J, Minx P, Nusbaum C, Russ C, Sykes SM, Tomlinson CM, Young S, Warren WC, Badger J, Crabtree J, Markowitz VM, Orvis J, Cree A, Ferriera S, Fulton LL, Fulton RS, Gillis M, Hemphill LD, Joshi V, Kovar C, Torralba M, Wetterstrand KA, Abouellleil A, Wollam AM, Buhay CJ, Ding Y, Dugan S, FitzGerald MG, Holder M, Hostetler J, Clifton SW, Allen-Vercoe E, Earl AM, Farmer CN, Liolios K, Surette MG, Xu Q, Pohl C, Wilczek-Boney K, Zhu D.

Science. 2010 May 21;328(5981):994-9. doi: 10.1126/science.1183605.

12.

Analysis of high-throughput sequencing and annotation strategies for phage genomes.

Henn MR, Sullivan MB, Stange-Thomann N, Osburne MS, Berlin AM, Kelly L, Yandava C, Kodira C, Zeng Q, Weiand M, Sparrow T, Saif S, Giannoukos G, Young SK, Nusbaum C, Birren BW, Chisholm SW.

PLoS One. 2010 Feb 5;5(2):e9083. doi: 10.1371/journal.pone.0009083.

13.

Dynamics of Pseudomonas aeruginosa genome evolution.

Mathee K, Narasimhan G, Valdes C, Qiu X, Matewish JM, Koehrsen M, Rokas A, Yandava CN, Engels R, Zeng E, Olavarietta R, Doud M, Smith RS, Montgomery P, White JR, Godfrey PA, Kodira C, Birren B, Galagan JE, Lory S.

Proc Natl Acad Sci U S A. 2008 Feb 26;105(8):3100-5. doi: 10.1073/pnas.0711982105. Epub 2008 Feb 19.

14.

Automated detection of single nucleotide polymorphism in beta-2 adrenergic receptor gene using LCx(R).

Yu H, Merchant B, Scheffel C, Yandava C, Drazen JM, Huff J.

Clin Chim Acta. 2001 Jun;308(1-2):17-24. Review.

PMID:
11412813
15.

Association of asthma with beta(2)-adrenergic receptor gene polymorphism and cigarette smoking.

Wang Z, Chen C, Niu T, Wu D, Yang J, Wang B, Fang Z, Yandava CN, Drazen JM, Weiss ST, Xu X.

Am J Respir Crit Care Med. 2001 May;163(6):1404-9. Erratum in: Am J Respir Crit Care Med. 2002 Sep 1;166(5):775.

PMID:
11371409
16.

Effect of polymorphism of the beta(2)-adrenergic receptor on response to regular use of albuterol in asthma.

Israel E, Drazen JM, Liggett SB, Boushey HA, Cherniack RM, Chinchilli VM, Cooper DM, Fahy JV, Fish JE, Ford JG, Kraft M, Kunselman S, Lazarus SC, Lemanske RF Jr, Martin RJ, McLean DE, Peters SP, Silverman EK, Sorkness CA, Szefler SJ, Weiss ST, Yandava CN; National Heart, Lung, and Blood Institute's Asthma Clinical Research Network.

Int Arch Allergy Immunol. 2001 Jan-Mar;124(1-3):183-6. Erratum in: Int Arch Allergy Immunol. 2012 Feb;157(2):212.

PMID:
11306963
17.

Polymorphism of the beta(2)-adrenergic receptor gene and desensitization in human airway smooth muscle.

Moore PE, Laporte JD, Abraham JH, Schwartzman IN, Yandava CN, Silverman ES, Drazen JM, Wand MP, Panettieri RA Jr, Shore SA.

Am J Respir Crit Care Med. 2000 Dec;162(6):2117-24.

PMID:
11112125
18.

Exhaled nitric oxide in patients with asthma: association with NOS1 genotype.

Wechsler ME, Grasemann H, Deykin A, Silverman EK, Yandava CN, Israel E, Wand M, Drazen JM.

Am J Respir Crit Care Med. 2000 Dec;162(6):2043-7.

PMID:
11112111
19.

Asthma exacerbations during long term beta agonist use: influence of beta(2) adrenoceptor polymorphism.

Taylor DR, Drazen JM, Herbison GP, Yandava CN, Hancox RJ, Town GI.

Thorax. 2000 Sep;55(9):762-7.

20.

The effect of polymorphisms of the beta(2)-adrenergic receptor on the response to regular use of albuterol in asthma.

Israel E, Drazen JM, Liggett SB, Boushey HA, Cherniack RM, Chinchilli VM, Cooper DM, Fahy JV, Fish JE, Ford JG, Kraft M, Kunselman S, Lazarus SC, Lemanske RF, Martin RJ, McLean DE, Peters SP, Silverman EK, Sorkness CA, Szefler SJ, Weiss ST, Yandava CN.

Am J Respir Crit Care Med. 2000 Jul;162(1):75-80.

21.

A neuronal NO synthase (NOS1) gene polymorphism is associated with asthma.

Grasemann H, Yandava CN, Storm van's Gravesande K, Deykin A, Pillari A, Ma J, Sonna LA, Lilly C, Stampfer MJ, Israel E, Silverman EK, Drazen JM.

Biochem Biophys Res Commun. 2000 Jun 7;272(2):391-4.

PMID:
10833424
22.

Neuronal NO synthase (NOS1) is a major candidate gene for asthma.

Grasemann H, Yandava CN, Drazen JM.

Clin Exp Allergy. 1999 Dec;29 Suppl 4:39-41.

PMID:
10641565
23.

Quantitative trait locus mapping of airway responsiveness to chromosomes 6 and 7 in inbred mice.

De Sanctis GT, Singer JB, Jiao A, Yandava CN, Lee YH, Haynes TC, Lander ES, Beier DR, Drazen JM.

Am J Physiol. 1999 Dec;277(6):L1118-23. doi: 10.1152/ajplung.1999.277.6.L1118.

PMID:
10600881
24.

Radiation hybrid and cytogenetic mapping of SOCS1 and SOCS2 to chromosomes 16p13 and 12q, respectively.

Yandava CN, Pillari A, Drazen JM.

Genomics. 1999 Oct 1;61(1):108-11.

PMID:
10512686
25.

Association between a sequence variant in the IL-4 gene promoter and FEV(1) in asthma.

Burchard EG, Silverman EK, Rosenwasser LJ, Borish L, Yandava C, Pillari A, Weiss ST, Hasday J, Lilly CM, Ford JG, Drazen JM.

Am J Respir Crit Care Med. 1999 Sep;160(3):919-22.

PMID:
10471619
26.

Mutations in the human 5-lipoxygenase gene.

In KH, Silverman ES, Asano K, Beier D, Fischer AR, Keith TP, Serino K, Yandava C, De Sanctis GT, Drazen JM.

Clin Rev Allergy Immunol. 1999 Spring-Summer;17(1-2):59-69.

PMID:
10436859
27.

Pharmacogenetic association between ALOX5 promoter genotype and the response to anti-asthma treatment.

Drazen JM, Yandava CN, Dubé L, Szczerback N, Hippensteel R, Pillari A, Israel E, Schork N, Silverman ES, Katz DA, Drajesk J.

Nat Genet. 1999 Jun;22(2):168-70.

PMID:
10369259
28.

Simple tandem repeat polymorphisms in the neuronal nitric oxide synthase gene in different ethnic populations.

Grasemann H, Drazen JM, Deykin A, Israel E, De Sanctis GT, Pillari A, Yandava CH.

Hum Hered. 1999 Jun;49(3):139-41.

PMID:
10364677
29.

Contribution of nitric oxide synthases 1, 2, and 3 to airway hyperresponsiveness and inflammation in a murine model of asthma.

De Sanctis GT, MacLean JA, Hamada K, Mehta S, Scott JA, Jiao A, Yandava CN, Kobzik L, Wolyniec WW, Fabian AJ, Venugopal CS, Grasemann H, Huang PL, Drazen JM.

J Exp Med. 1999 May 17;189(10):1621-30.

30.

Cytogenetic and radiation hybrid mapping of human arachidonate 5-lipoxygenase-activating protein (ALOX5AP) to chromosome 13q12.

Yandava CN, Kennedy BP, Pillari A, Duncan AM, Drazen JM.

Genomics. 1999 Feb 15;56(1):131-3.

PMID:
10036194
31.

Interleukin-8 receptor modulates IgE production and B-cell expansion and trafficking in allergen-induced pulmonary inflammation.

De Sanctis GT, MacLean JA, Qin S, Wolyniec WW, Grasemann H, Yandava CN, Jiao A, Noonan T, Stein-Streilein J, Green FH, Drazen JM.

J Clin Invest. 1999 Feb;103(4):507-15.

32.

Pharmacogenetics of the 5-lipoxygenase pathway in asthma.

Silverman E, In KH, Yandava C, Drazen JM.

Clin Exp Allergy. 1998 Nov;28 Suppl 5:164-70; discussion 171-3. Review.

PMID:
9988463
33.

Localization of the gene for thiamine-responsive megaloblastic anemia syndrome, on the long arm of chromosome 1, by homozygosity mapping.

Neufeld EJ, Mandel H, Raz T, Szargel R, Yandava CN, Stagg A, Fauré S, Barrett T, Buist N, Cohen N.

Am J Hum Genet. 1997 Dec;61(6):1335-41.

34.

Contribution of type I NOS to expired gas NO and bronchial responsiveness in mice.

De Sanctis GT, Mehta S, Kobzik L, Yandava C, Jiao A, Huang PL, Drazen JM.

Am J Physiol. 1997 Oct;273(4 Pt 1):L883-8.

PMID:
9357865
35.

Characterization of Alu repeats that are associated with trinucleotide and tetranucleotide repeat microsatellites.

Yandava CN, Gastier JM, Pulido JC, Brody T, Sheffield V, Murray J, Buetow K, Duyk GM.

Genome Res. 1997 Jul;7(7):716-24.

36.

Naturally occurring mutations in the human 5-lipoxygenase gene promoter that modify transcription factor binding and reporter gene transcription.

In KH, Asano K, Beier D, Grobholz J, Finn PW, Silverman EK, Silverman ES, Collins T, Fischer AR, Keith TP, Serino K, Kim SW, De Sanctis GT, Yandava C, Pillari A, Rubin P, Kemp J, Israel E, Busse W, Ledford D, Murray JJ, Segal A, Tinkleman D, Drazen JM.

J Clin Invest. 1997 Mar 1;99(5):1130-7.

37.

Protein sequence of the human neuronal nitric oxide synthase (Type I NOS): an error in the sequence database.

Grasemann H, Drazen JM, Yandava CN.

Nitric Oxide. 1997;1(6):441. No abstract available.

PMID:
9466948
38.

Chromosomal assignment of 2900 tri- and tetranucleotide repeat markers using NIGMS somatic cell hybrid panel 2.

Sunden SL, Businga T, Beck J, McClain A, Gastier JM, Pulido JC, Yandava CN, Brody T, Ghazizadeh J, Weber JL, Duyk GM, Murray JC, Buetow KH, Sheffield VC.

Genomics. 1996 Feb 15;32(1):15-20.

PMID:
8786107
39.

ARMS test for diagnosis of factor VLeiden mutation, a common cause of inherited thrombotic tendency.

Yandava CN, Zappulla DC, Korf BR, Neufeld EJ.

J Clin Lab Anal. 1996;10(6):414-7.

PMID:
8951612
40.

A collection of tri- and tetranucleotide repeat markers used to generate high quality, high resolution human genome-wide linkage maps.

Sheffield VC, Weber JL, Buetow KH, Murray JC, Even DA, Wiles K, Gastier JM, Pulido JC, Yandava C, Sunden SL, et al.

Hum Mol Genet. 1995 Oct;4(10):1837-44.

PMID:
8595404
41.

A trinucleotide repeat polymorphism in XT00444 (D13S635E).

Yandava CN, Meyers V, Watkins H, Duyk G.

Hum Mol Genet. 1994 Jul;3(7):1209. No abstract available.

PMID:
7981706
42.

Linkage of Bardet-Biedl syndrome to chromosome 16q and evidence for non-allelic genetic heterogeneity.

Kwitek-Black AE, Carmi R, Duyk GM, Buetow KH, Elbedour K, Parvari R, Yandava CN, Stone EM, Sheffield VC.

Nat Genet. 1993 Dec;5(4):392-6.

PMID:
8298649
44.

Role for the Epstein-Barr virus nuclear antigen 2 in viral promoter switching during initial stages of infection.

Woisetschlaeger M, Jin XW, Yandava CN, Furmanski LA, Strominger JL, Speck SH.

Proc Natl Acad Sci U S A. 1991 May 1;88(9):3942-6.

45.

Promoter switching in Epstein-Barr virus during the initial stages of infection of B lymphocytes.

Woisetschlaeger M, Yandava CN, Furmanski LA, Strominger JL, Speck SH.

Proc Natl Acad Sci U S A. 1990 Mar;87(5):1725-9.

46.

Lymphoproliferation and in vitro antibody synthesis in leprosy patients.

Yandava CN, Bhutani LK, Sharma AK, Nath I.

Int J Lepr Other Mycobact Dis. 1989 Sep;57(3):633-40.

PMID:
2674302
47.

Complex transcription of the Epstein-Barr virus BamHI fragment H rightward open reading frame 1 (BHRF1) in latently and lytically infected B lymphocytes.

Austin PJ, Flemington E, Yandava CN, Strominger JL, Speck SH.

Proc Natl Acad Sci U S A. 1988 Jun;85(11):3678-82.

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