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The Effects of Maternal Obesity on Porcine Placental Efficiency and Proteome.

Li JW, Hu J, Wei M, Guo YY, Yan PS.

Animals (Basel). 2019 Aug 12;9(8). pii: E546. doi: 10.3390/ani9080546.


Metabolic Regulation of Glycolysis and AMP Activated Protein Kinase Pathways during Black Raspberry-Mediated Oral Cancer Chemoprevention.

Knobloch TJ, Ryan NM, Bruschweiler-Li L, Wang C, Bernier MC, Somogyi A, Yan PS, Cooperstone JL, Mo X, Brüschweiler RP, Weghorst CM, Oghumu S.

Metabolites. 2019 Jul 11;9(7). pii: E140. doi: 10.3390/metabo9070140.


ROR1-targeted delivery of miR-29b induces cell cycle arrest and therapeutic benefit in vivo in a CLL mouse model.

Chiang CL, Goswami S, Frissora FW, Xie Z, Yan PS, Bundschuh R, Walker LA, Huang X, Mani R, Mo XM, Baskar S, Rader C, Phelps MA, Marcucci G, Byrd JC, Lee LJ, Muthusamy N.

Blood. 2019 Aug 1;134(5):432-444. doi: 10.1182/blood.2018882290. Epub 2019 May 31.


TET1 reprograms the epithelial ovarian cancer epigenome and reveals casein kinase 2α as a therapeutic target.

Chen LY, Huang RL, Chan MW, Yan PS, Huang TS, Wu RC, Suryo Rahmanto Y, Su PH, Weng YC, Chou JL, Chao TK, Wang YC, Shih IM, Lai HC.

J Pathol. 2019 Jul;248(3):363-376. doi: 10.1002/path.5266. Epub 2019 Apr 23.


[Comparison of contrast sensitivity and wavefront aberrations with myopic].

Gao HH, Du ZY, Yan PS, Zhang Y, Li T.

Zhonghua Yan Ke Za Zhi. 2018 Oct 11;54(10):748-755. doi: 10.3760/cma.j.issn.0412-4081.2018.10.006. Chinese.


Estimation of metabolisable energy and net energy of rice straw and wheat straw for beef cattle by indirect calorimetry.

Wei M, Cui ZH, Li JW, Yan PS.

Arch Anim Nutr. 2018 Aug;72(4):275-289. doi: 10.1080/1745039X.2018.1482076. Epub 2018 Jul 4.


Diverse AR-V7 cistromes in castration-resistant prostate cancer are governed by HoxB13.

Chen Z, Wu D, Thomas-Ahner JM, Lu C, Zhao P, Zhang Q, Geraghty C, Yan PS, Hankey W, Sunkel B, Cheng X, Antonarakis ES, Wang QE, Liu Z, Huang TH, Jin VX, Clinton SK, Luo J, Huang J, Wang Q.

Proc Natl Acad Sci U S A. 2018 Jun 26;115(26):6810-6815. doi: 10.1073/pnas.1718811115. Epub 2018 May 29. Erratum in: Proc Natl Acad Sci U S A. 2018 Sep 18;115(38):E9025.


FuSpot: a web-based tool for visual evaluation of fusion candidates.

Killian JA, Topiwala TM, Pelletier AR, Frankhouser DE, Yan PS, Bundschuh R.

BMC Genomics. 2018 Feb 13;19(1):139. doi: 10.1186/s12864-018-4486-3.


The effect of maternal obesity on fatty acid transporter expression and lipid metabolism in the full-term placenta of lean breed swine.

Tian L, Dong SS, Hu J, Yao JJ, Yan PS.

J Anim Physiol Anim Nutr (Berl). 2018 Feb;102(1):e242-e253. doi: 10.1111/jpn.12735. Epub 2017 May 15.


Correlation between Cystatin C and retinopathy of type-two diabetes mellitus patients.

Qian C, Wan GM, Yan PS, Wang WZ, Liang SZ, Dong Y.

J Biol Regul Homeost Agents. 2017 Jan-Mar;31(1):99-103.


Nerve growth factor protects against palmitic acid-induced injury in retinal ganglion cells.

Yan PS, Tang S, Zhang HF, Guo YY, Zeng ZW, Wen Q.

Neural Regen Res. 2016 Nov;11(11):1851-1856. doi: 10.4103/1673-5374.194758.


Clinical effect of intravitreous injection of triamcinolone acetonide in treating cystoid macular edema.

Yan PS, Qian C, Wan GM, Wang WZ, Dong Y, Li FZ.

J Biol Regul Homeost Agents. 2016 Jan-Mar;30(1):205-10.


Preclinical Investigation of the Novel Histone Deacetylase Inhibitor AR-42 in the Treatment of Cancer-Induced Cachexia.

Tseng YC, Kulp SK, Lai IL, Hsu EC, He WA, Frankhouser DE, Yan PS, Mo X, Bloomston M, Lesinski GB, Marcucci G, Guttridge DC, Bekaii-Saab T, Chen CS.

J Natl Cancer Inst. 2015 Oct 12;107(12):djv274. doi: 10.1093/jnci/djv274. Print 2015 Dec.


Fatty acid composition evaluation of edible parts of Eriocheir sinensis in intensive ponds of Gucheng waters.

Yu JY, Yan PS.

Genet Mol Res. 2015 May 22;14(2):5334-45. doi: 10.4238/2015.May.22.4.


Hypermethylation of the TGF-β target, ABCA1 is associated with poor prognosis in ovarian cancer patients.

Chou JL, Huang RL, Shay J, Chen LY, Lin SJ, Yan PS, Chao WT, Lai YH, Lai YL, Chao TK, Lee CI, Tai CK, Wu SF, Nephew KP, Huang TH, Lai HC, Chan MW.

Clin Epigenetics. 2015 Jan 14;7:1. doi: 10.1186/s13148-014-0036-2. eCollection 2015.


Agonist and antagonist switch DNA motifs recognized by human androgen receptor in prostate cancer.

Chen Z, Lan X, Thomas-Ahner JM, Wu D, Liu X, Ye Z, Wang L, Sunkel B, Grenade C, Chen J, Zynger DL, Yan PS, Huang J, Nephew KP, Huang TH, Lin S, Clinton SK, Li W, Jin VX, Wang Q.

EMBO J. 2015 Feb 12;34(4):502-16. doi: 10.15252/embj.201490306. Epub 2014 Dec 22.


Expression and prognostic impact of lncRNAs in acute myeloid leukemia.

Garzon R, Volinia S, Papaioannou D, Nicolet D, Kohlschmidt J, Yan PS, Mrózek K, Bucci D, Carroll AJ, Baer MR, Wetzler M, Carter TH, Powell BL, Kolitz JE, Moore JO, Eisfeld AK, Blachly JS, Blum W, Caligiuri MA, Stone RM, Marcucci G, Croce CM, Byrd JC, Bloomfield CD.

Proc Natl Acad Sci U S A. 2014 Dec 30;111(52):18679-84. doi: 10.1073/pnas.1422050112. Epub 2014 Dec 15.


Characterisation and immunomodulating activities of exo-polysaccharides from submerged cultivation of Hypsizigus marmoreus.

Zhang BZ, Inngjerdingen KT, Zou YF, Rise F, Michaelsen TE, Yan PS, Paulsen BS.

Food Chem. 2014 Nov 15;163:120-8. doi: 10.1016/j.foodchem.2014.04.092. Epub 2014 May 4.


Efficient purification of antiproliferative polysaccharides from Hypsizigus marmoreus with radial flow chromatography.

Yan PS, Cao LX, Zhang BZ.

Biotechnol Prog. 2014 Jul-Aug;30(4):872-8. doi: 10.1002/btpr.1926. Epub 2014 May 22.


Effects of heat treatment of soy protein isolate on the growth performance and immune function of broiler chickens.

Wu DW, Chen X, Yang X, Leng ZX, Yan PS, Zhou YM.

Poult Sci. 2014 Feb;93(2):326-34. doi: 10.3382/ps.2013-03507.


Molecular cloning, expression, and regulation of the ovalbumin gene in pigeon oviduct epithelial cells.

Zhang H, Lu LZ, Chen L, Tao ZR, Chen F, Zhong SL, Liu YL, Tian Y, Yan PS.

Genet Mol Res. 2014 Jan 10;13(1):117-26. doi: 10.4238/2014.January.10.2.


[Evaluation of quality of vision in early stage after sub-bowman keratomileusis].

Zhang Y, Du ZY, Yan PS.

Zhonghua Yan Ke Za Zhi. 2013 May;49(5):416-21. Chinese.


Amplification of distant estrogen response elements deregulates target genes associated with tamoxifen resistance in breast cancer.

Hsu PY, Hsu HK, Lan X, Juan L, Yan PS, Labanowska J, Heerema N, Hsiao TH, Chiu YC, Chen Y, Liu Y, Li L, Li R, Thompson IM, Nephew KP, Sharp ZD, Kirma NB, Jin VX, Huang TH.

Cancer Cell. 2013 Aug 12;24(2):197-212. doi: 10.1016/j.ccr.2013.07.007.


Potential of chitinolytic Serratia marcescens strain JPP1 for biological control of Aspergillus parasiticus and aflatoxin.

Wang K, Yan PS, Cao LX, Ding QL, Shao C, Zhao TF.

Biomed Res Int. 2013;2013:397142. doi: 10.1155/2013/397142. Epub 2013 Jun 20.


A new method for stranded whole transcriptome RNA-seq.

Miller DF, Yan PS, Buechlein A, Rodriguez BA, Yilmaz AS, Goel S, Lin H, Collins-Burow B, Rhodes LV, Braun C, Pradeep S, Rupaimoole R, Dalkilic M, Sood AK, Burow ME, Tang H, Huang TH, Liu Y, Rusch DB, Nephew KP.

Methods. 2013 Sep 15;63(2):126-34. doi: 10.1016/j.ymeth.2013.03.023. Epub 2013 Apr 1.


Diversity of culturable root-associated/endophytic bacteria and their chitinolytic and aflatoxin inhibition activity of peanut plant in China.

Wang K, Yan PS, Ding QL, Wu QX, Wang ZB, Peng J.

World J Microbiol Biotechnol. 2013 Jan;29(1):1-10. doi: 10.1007/s11274-012-1135-x. Epub 2012 Oct 30.


Cooperativity of stress-responsive transcription factors in core hypoxia-inducible factor binding regions.

Villar D, Ortiz-Barahona A, Gómez-Maldonado L, Pescador N, Sánchez-Cabo F, Hackl H, Rodriguez BA, Trajanoski Z, Dopazo A, Huang TH, Yan PS, Del Peso L.

PLoS One. 2012;7(9):e45708. doi: 10.1371/journal.pone.0045708. Epub 2012 Sep 24.


RANK (TNFRSF11A) is epigenetically inactivated and induces apoptosis in gliomas.

von dem Knesebeck A, Felsberg J, Waha A, Hartmann W, Scheffler B, Glas M, Hammes J, Mikeska T, Yan PS, Endl E, Simon M, Reifenberger G, Pietsch T, Waha A.

Neoplasia. 2012 Jun;14(6):526-34.


Short-read, high-throughput sequencing technology for STR genotyping.

Bornman DM, Hester ME, Schuetter JM, Kasoji MD, Minard-Smith A, Barden CA, Nelson SC, Godbold GD, Baker CH, Yang B, Walther JE, Tornes IE, Yan PS, Rodriguez B, Bundschuh R, Dickens ML, Young BA, Faith SA.

Biotech Rapid Dispatches. 2012 Apr;2012:1-6.


Tcl1 protein functions as an inhibitor of de novo DNA methylation in B-cell chronic lymphocytic leukemia (CLL).

Palamarchuk A, Yan PS, Zanesi N, Wang L, Rodrigues B, Murphy M, Balatti V, Bottoni A, Nazaryan N, Alder H, Rassenti L, Kipps TJ, Freitas M, Croce CM, Pekarsky Y.

Proc Natl Acad Sci U S A. 2012 Feb 14;109(7):2555-60. doi: 10.1073/pnas.1200003109. Epub 2012 Jan 30.


Preprocessing differential methylation hybridization microarray data.

Sun S, Huang YW, Yan PS, Huang TH, Lin S.

BioData Min. 2011 May 16;4:13. doi: 10.1186/1756-0381-4-13.


Aberrant TGFβ/SMAD4 signaling contributes to epigenetic silencing of a putative tumor suppressor, RunX1T1 in ovarian cancer.

Yeh KT, Chen TH, Yang HW, Chou JL, Chen LY, Yeh CM, Chen YH, Lin RI, Su HY, Chen GC, Deatherage DE, Huang YW, Yan PS, Lin HJ, Nephew KP, Huang TH, Lai HC, Chan MW.

Epigenetics. 2011 Jun;6(6):727-39. Epub 2011 Jun 1.


Identifying hypermethylated CpG islands using a quantile regression model.

Sun S, Chen Z, Yan PS, Huang YW, Huang TH, Lin S.

BMC Bioinformatics. 2011 Feb 15;12:54. doi: 10.1186/1471-2105-12-54.


Estrogen-mediated epigenetic repression of the imprinted gene cyclin-dependent kinase inhibitor 1C in breast cancer cells.

Rodriguez BA, Weng YI, Liu TM, Zuo T, Hsu PY, Lin CH, Cheng AL, Cui H, Yan PS, Huang TH.

Carcinogenesis. 2011 Jun;32(6):812-21. doi: 10.1093/carcin/bgr017. Epub 2011 Feb 8.


Functional characterization of Trip10 in cancer cell growth and survival.

Hsu CC, Leu YW, Tseng MJ, Lee KD, Kuo TY, Yen JY, Lai YL, Hung YC, Sun WS, Chen CM, Chu PY, Yeh KT, Yan PS, Chang YS, Huang TH, Hsiao SH.

J Biomed Sci. 2011 Feb 7;18:12. doi: 10.1186/1423-0127-18-12.


Tumour-specific methylation of PTPRG intron 1 locus in sporadic and Lynch syndrome colorectal cancer.

van Roon EH, de Miranda NF, van Nieuwenhuizen MP, de Meijer EJ, van Puijenbroek M, Yan PS, Huang TH, van Wezel T, Morreau H, Boer JM.

Eur J Hum Genet. 2011 Mar;19(3):307-12. doi: 10.1038/ejhg.2010.187. Epub 2010 Dec 8.


DNA methylation of the Trip10 promoter accelerates mesenchymal stem cell lineage determination.

Hsiao SH, Lee KD, Hsu CC, Tseng MJ, Jin VX, Sun WS, Hung YC, Yeh KT, Yan PS, Lai YY, Sun HS, Lu YJ, Chang YS, Tsai SJ, Huang TH, Leu YW.

Biochem Biophys Res Commun. 2010 Sep 24;400(3):305-12. doi: 10.1016/j.bbrc.2010.08.048. Epub 2010 Aug 19.


Anterior segment variations with age and accommodation demonstrated by slit-lamp-adapted optical coherence tomography.

Yan PS, Lin HT, Wang QL, Zhang ZP.

Ophthalmology. 2010 Dec;117(12):2301-7. doi: 10.1016/j.ophtha.2010.03.027. Epub 2010 Jun 29.


Estrogen-mediated epigenetic repression of large chromosomal regions through DNA looping.

Hsu PY, Hsu HK, Singer GA, Yan PS, Rodriguez BA, Liu JC, Weng YI, Deatherage DE, Chen Z, Pereira JS, Lopez R, Russo J, Wang Q, Lamartiniere CA, Nephew KP, Huang TH.

Genome Res. 2010 Jun;20(6):733-44. doi: 10.1101/gr.101923.109. Epub 2010 May 4.


[Slit lamp optical coherence tomography study of anterior segment changes after phacoemulsification and foldable intraocular lens implantation].

Yan PS, Zhang ZP, Lin HT, Wu WJ, Bai L.

Zhonghua Yan Ke Za Zhi. 2009 Sep;45(9):809-13. Chinese.


Epigenetic downregulation of mitogen-activated protein kinase phosphatase MKP-2 relieves its growth suppressive activity in glioma cells.

Waha A, Felsberg J, Hartmann W, von dem Knesebeck A, Mikeska T, Joos S, Wolter M, Koch A, Yan PS, Endl E, Wiestler OD, Reifenberger G, Pietsch T, Waha A.

Cancer Res. 2010 Feb 15;70(4):1689-99. doi: 10.1158/0008-5472.CAN-09-3218. Epub 2010 Feb 2.


Promoter hypermethylation of FBXO32, a novel TGF-beta/SMAD4 target gene and tumor suppressor, is associated with poor prognosis in human ovarian cancer.

Chou JL, Su HY, Chen LY, Liao YP, Hartman-Frey C, Lai YH, Yang HW, Deatherage DE, Kuo CT, Huang YW, Yan PS, Hsiao SH, Tai CK, Lin HJ, Davuluri RV, Chao TK, Nephew KP, Huang TH, Lai HC, Chan MW.

Lab Invest. 2010 Mar;90(3):414-25. doi: 10.1038/labinvest.2009.138. Epub 2010 Jan 11.


Identifying differentially methylated genes using mixed effect and generalized least square models.

Sun S, Yan PS, Huang TH, Lin S.

BMC Bioinformatics. 2009 Dec 9;10:404. doi: 10.1186/1471-2105-10-404.


Methylated DNA immunoprecipitation and microarray-based analysis: detection of DNA methylation in breast cancer cell lines.

Weng YI, Huang TH, Yan PS.

Methods Mol Biol. 2009;590:165-76. doi: 10.1007/978-1-60327-378-7_10.


Identification of candidate epigenetic biomarkers for ovarian cancer detection.

Huang YW, Jansen RA, Fabbri E, Potter D, Liyanarachchi S, Chan MW, Liu JC, Crijns AP, Brown R, Nephew KP, van der Zee AG, Cohn DE, Yan PS, Huang TH, Lin HJ.

Oncol Rep. 2009 Oct;22(4):853-61.


An integrative ChIP-chip and gene expression profiling to model SMAD regulatory modules.

Qin H, Chan MW, Liyanarachchi S, Balch C, Potter D, Souriraj IJ, Cheng AS, Agosto-Perez FJ, Nikonova EV, Yan PS, Lin HJ, Nephew KP, Saltz JH, Showe LC, Huang TH, Davuluri RV.

BMC Syst Biol. 2009 Jul 17;3:73. doi: 10.1186/1752-0509-3-73.


Methylation analysis by microarray.

Deatherage DE, Potter D, Yan PS, Huang TH, Lin S.

Methods Mol Biol. 2009;556:117-39. doi: 10.1007/978-1-60327-192-9_9.


[Selection of accurate IOL formula in patients with cataract and high hyperopia].

Bai L, Zhang ZP, Yi GL, Wu WJ, Lin HT, Yan PS.

Zhonghua Yan Ke Za Zhi. 2008 Dec;44(12):1063-5. Chinese.


Breast cancer-associated fibroblasts confer AKT1-mediated epigenetic silencing of Cystatin M in epithelial cells.

Lin HJ, Zuo T, Lin CH, Kuo CT, Liyanarachchi S, Sun S, Shen R, Deatherage DE, Potter D, Asamoto L, Lin S, Yan PS, Cheng AL, Ostrowski MC, Huang TH.

Cancer Res. 2008 Dec 15;68(24):10257-66. doi: 10.1158/0008-5472.CAN-08-0288.

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