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Items: 29

1.

Pou5f3, SoxB1, and Nanog remodel chromatin on high nucleosome affinity regions at zygotic genome activation.

Veil M, Yampolsky LY, GrĂ¼ning B, Onichtchouk D.

Genome Res. 2019 Mar;29(3):383-395. doi: 10.1101/gr.240572.118. Epub 2019 Jan 23.

PMID:
30674556
2.

The Trace Element Zinc in the Composition of Native Chorionic Gonadotropin.

Budko YV, Yampolsky LM, Fedorov YO, Khabarov AA.

Crit Rev Eukaryot Gene Expr. 2018;28(4):337-342. doi: 10.1615/CritRevEukaryotGeneExpr.2017019373.

PMID:
30311582
3.

Temperature gradient affects differentiation of gene expression and SNP allele frequencies in the dominant Lake Baikal zooplankton species.

Bowman LL, Kondrateva ES, Timofeyev MA, Yampolsky LY.

Mol Ecol. 2018 Jun;27(11):2544-2559. doi: 10.1111/mec.14704. Epub 2018 May 17.

PMID:
29691934
4.

Net Evolutionary Loss of Residue Polarity in Drosophilid Protein Cores Indicates Ongoing Optimization of Amino Acid Composition.

Yampolsky LY, Wolf YI, Bouzinier MA.

Genome Biol Evol. 2017 Oct 1;9(10):2879-2892. doi: 10.1093/gbe/evx191.

5.

Antioxidant capacity, lipid peroxidation, and lipid composition changes during long-term and short-term thermal acclimation in Daphnia.

Coggins BL, Collins JW, Holbrook KJ, Yampolsky LY.

J Comp Physiol B. 2017 Dec;187(8):1091-1106. doi: 10.1007/s00360-017-1090-9. Epub 2017 Apr 7.

PMID:
28389697
6.

Nuclear DNA content correlates with depth, body size, and diversification rate in amphipod crustaceans from ancient Lake Baikal, Russia.

Jeffery NW, Yampolsky L, Gregory TR.

Genome. 2017 Apr;60(4):303-309. doi: 10.1139/gen-2016-0128. Epub 2016 Nov 14.

PMID:
28177846
7.

Transcriptome-based phylogeny of endemic Lake Baikal amphipod species flock: fast speciation accompanied by frequent episodes of positive selection.

Naumenko SA, Logacheva MD, Popova NV, Klepikova AV, Penin AA, Bazykin GA, Etingova AE, Mugue NS, Kondrashov AS, Yampolsky LY.

Mol Ecol. 2017 Jan;26(2):536-553. doi: 10.1111/mec.13927. Epub 2017 Jan 2.

8.

Functional genomics of acclimation and adaptation in response to thermal stress in Daphnia.

Yampolsky LY, Zeng E, Lopez J, Williams PJ, Dick KB, Colbourne JK, Pfrender ME.

BMC Genomics. 2014 Oct 4;15:859. doi: 10.1186/1471-2164-15-859.

9.

Faster evolving Drosophila paralogs lose expression rate and ubiquity and accumulate more non-synonymous SNPs.

Yampolsky LY, Bouzinier MA.

Biol Direct. 2014 Jan 17;9:2. doi: 10.1186/1745-6150-9-2.

10.

Adaptive phenotypic plasticity and local adaptation for temperature tolerance in freshwater zooplankton.

Yampolsky LY, Schaer TM, Ebert D.

Proc Biol Sci. 2013 Dec 18;281(1776):20132744. doi: 10.1098/rspb.2013.2744. Print 2014 Feb 7.

11.

Evolution of gene expression and expression plasticity in long-term experimental populations of Drosophila melanogaster maintained under constant and variable ethanol stress.

Yampolsky LY, Glazko GV, Fry JD.

Mol Ecol. 2012 Sep;21(17):4287-99. doi: 10.1111/j.1365-294X.2012.05697.x. Epub 2012 Jul 9.

12.

Mentoring interdisciplinary undergraduate students via a team effort.

Karsai I, Knisley J, Knisley D, Yampolsky L, Godbole A.

CBE Life Sci Educ. 2011 Fall;10(3):250-8. doi: 10.1187/cbe.10-03-0027.

13.

Genetic variation of dietary restriction and the effects of nutrient-free water and amino acid supplements on lifespan and fecundity of Drosophila.

Dick KB, Ross CR, Yampolsky LY.

Genet Res (Camb). 2011 Aug;93(4):265-73. doi: 10.1017/S001667231100019X. Epub 2011 Jul 18.

PMID:
21767463
14.

Evolutionary patterns of amino acid substitutions in 12 Drosophila genomes.

Yampolsky LY, Bouzinier MA.

BMC Genomics. 2010 Dec 2;11 Suppl 4:S10. doi: 10.1186/1471-2164-11-S4-S10.

15.

Child sexual abuse: is it a risk factor for pregnancy?

Yampolsky L, Lev-Wiesel R, Ben-Zion IZ.

J Adv Nurs. 2010 Sep;66(9):2025-37. doi: 10.1111/j.1365-2648.2010.05387.x. Epub 2010 Jul 16.

PMID:
20636469
16.

Widespread transcriptional autosomal dosage compensation in Drosophila correlates with gene expression level.

McAnally AA, Yampolsky LY.

Genome Biol Evol. 2009 Dec 23;2:44-52. doi: 10.1093/gbe/evp054.

17.

Climbing mount probable: mutation as a cause of nonrandomness in evolution.

Stoltzfus A, Yampolsky LY.

J Hered. 2009 Sep-Oct;100(5):637-47. doi: 10.1093/jhered/esp048. Epub 2009 Jul 22. Review.

PMID:
19625453
18.

Amino acid exchangeability and the adaptive code hypothesis.

Stoltzfus A, Yampolsky LY.

J Mol Evol. 2007 Oct;65(4):456-62. Epub 2007 Sep 26.

PMID:
17896070
19.

Distribution of the strength of selection against amino acid replacements in human proteins.

Yampolsky LY, Kondrashov FA, Kondrashov AS.

Hum Mol Genet. 2005 Nov 1;14(21):3191-201. Epub 2005 Sep 20.

PMID:
16174645
20.

Persistence time of loss-of-function mutations at nonessential loci affecting eye color in Drosophila melanogaster.

Yampolsky LY, Allen C, Shabalina SA, Kondrashov AS.

Genetics. 2005 Dec;171(4):2133-8. Epub 2005 Aug 22.

21.

The exchangeability of amino acids in proteins.

Yampolsky LY, Stoltzfus A.

Genetics. 2005 Aug;170(4):1459-72. Epub 2005 Jun 8.

22.

Molecular and morphological evolution of the amphipod radiation of Lake Baikal.

MacDonald KS 3rd, Yampolsky L, Duffy JE.

Mol Phylogenet Evol. 2005 May;35(2):323-43.

PMID:
15804407
23.

Untangling the effects of codon mutation and amino acid exchangeability.

Yampolsky LY, Stoltzfus A.

Pac Symp Biocomput. 2005:433-44.

24.

Age-specific effects of novel mutations in Drosophila melanogaster I. Mortality.

Yampolsky LYu, Pearse LE, Promislow DE.

Genetica. 2000;110(1):11-29.

PMID:
11519872
25.

Bias in the introduction of variation as an orienting factor in evolution.

Yampolsky LY, Stoltzfus A.

Evol Dev. 2001 Mar-Apr;3(2):73-83.

PMID:
11341676
26.

Rapid decline of fitness in panmictic populations of Drosophila melanogaster maintained under relaxed natural selection.

Shabalina SA, Yampolsky LYu, Kondrashov AS.

Proc Natl Acad Sci U S A. 1997 Nov 25;94(24):13034-9.

27.

The effect of cryopreservation on the lethal mutation rate in Drosophila melanogaster.

Houle D, Kondrashov AS, Yampolsky LY, Caldwell S, Steponkus PL.

Genet Res. 1997 Jun;69(3):209-13.

PMID:
9290323
28.

DEVELOPMENTAL NOISE, PHENOTYPIC PLASTICITY, AND ALLOZYME HETEROZYGOSITY IN DAPHNIA.

Yampolsky LY, Scheiner SM.

Evolution. 1994 Oct;48(5):1715-1722. doi: 10.1111/j.1558-5646.1994.tb02207.x.

PMID:
28568411
29.

GENETIC VARIATION IN THE SEXUAL REPRODUCTION RATE WITHIN A POPULATION OF A CYCLIC PARTHENOGEN, DAPHNIA MAGNA.

Yampolsky LY.

Evolution. 1992 Jun;46(3):833-837. doi: 10.1111/j.1558-5646.1992.tb02089.x. No abstract available.

PMID:
28568674

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