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Items: 31

1.

Isolation and Purification of Fungal Luciferase from Neonothopanus nimbi.

Purtov KV, Gorokhovatsky AY, Kotlobay AA, Osipova ZM, Petushkov VN, Rodionova NS, Tsarkova AS, Chepurnykh TV, Yampolsky IV, Gitelson JI.

Dokl Biochem Biophys. 2018 May;480(1):177-180. doi: 10.1134/S1607672918030134. Epub 2018 Jul 14.

PMID:
30008105
2.

Corrigendum to "Luciferase of the Japanese syllid polychaete Odontosyllis undecimdonta" [Biochem. Biophys. Res. Commun. 2018 Jul 20;502(3):318-323].

Schultz DT, Kotlobay AA, Ziganshin R, Bannikov A, Markina NM, Chepurnyh TV, Shakhova ES, Palkina K, Haddock SHD, Yampolsky IV, Oba Y.

Biochem Biophys Res Commun. 2018 Sep 5;503(2):1179. doi: 10.1016/j.bbrc.2018.06.122. Epub 2018 Jun 25. No abstract available.

PMID:
29954603
3.

Luciferase of the Japanese syllid polychaete Odontosyllis umdecimdonta.

Schultz DT, Kotlobay AA, Ziganshin R, Bannikov A, Markina NM, Chepurnyh TV, Shakhova ES, Palkina K, Haddock SHD, Yampolsky IV, Oba Y.

Biochem Biophys Res Commun. 2018 Jul 20;502(3):318-323. doi: 10.1016/j.bbrc.2018.05.135. Epub 2018 May 26. Erratum in: Biochem Biophys Res Commun. 2018 Sep 5;503(2):1179.

PMID:
29792858
4.

SypHer3s: a genetically encoded fluorescent ratiometric probe with enhanced brightness and an improved dynamic range.

Ermakova YG, Pak VV, Bogdanova YA, Kotlobay AA, Yampolsky IV, Shokhina AG, Panova AS, Marygin RA, Staroverov DB, Bilan DS, Sies H, Belousov VV.

Chem Commun (Camb). 2018 Mar 15;54(23):2898-2901. doi: 10.1039/c7cc08740c.

PMID:
29497715
5.

Structure of fungal oxyluciferin, the product of the bioluminescence reaction.

Purtov KV, Osipova ZM, Petushkov VN, Rodionova NS, Tsarkova AS, Kotlobay AA, Chepurnykh TV, Gorokhovatsky AY, Yampolsky IV, Gitelson JI.

Dokl Biochem Biophys. 2017 Nov;477(1):360-363. doi: 10.1134/S1607672917060059. Epub 2018 Jan 3.

PMID:
29297129
6.

Unveiling Structural Motions of a Highly Fluorescent Superphotoacid by Locking and Fluorinating the GFP Chromophore in Solution.

Chen C, Liu W, Baranov MS, Baleeva NS, Yampolsky IV, Zhu L, Wang Y, Shamir A, Solntsev KM, Fang C.

J Phys Chem Lett. 2017 Dec 7;8(23):5921-5928. doi: 10.1021/acs.jpclett.7b02661. Epub 2017 Nov 22.

7.

Protein labeling for live cell fluorescence microscopy with a highly photostable renewable signal.

Bozhanova NG, Baranov MS, Klementieva NV, Sarkisyan KS, Gavrikov AS, Yampolsky IV, Zagaynova EV, Lukyanov SA, Lukyanov KA, Mishin AS.

Chem Sci. 2017 Oct 1;8(10):7138-7142. doi: 10.1039/c7sc01628j. Epub 2017 Aug 3.

8.

Identification of hispidin as a bioluminescent active compound and its recycling biosynthesis in the luminous fungal fruiting body.

Oba Y, Suzuki Y, Martins GNR, Carvalho RP, Pereira TA, Waldenmaier HE, Kanie S, Naito M, Oliveira AG, Dörr FA, Pinto E, Yampolsky IV, Stevani CV.

Photochem Photobiol Sci. 2017 Sep 13;16(9):1435-1440. doi: 10.1039/c7pp00216e.

PMID:
28766678
9.

Mechanism and color modulation of fungal bioluminescence.

Kaskova ZM, Dörr FA, Petushkov VN, Purtov KV, Tsarkova AS, Rodionova NS, Mineev KS, Guglya EB, Kotlobay A, Baleeva NS, Baranov MS, Arseniev AS, Gitelson JI, Lukyanov S, Suzuki Y, Kanie S, Pinto E, Di Mascio P, Waldenmaier HE, Pereira TA, Carvalho RP, Oliveira AG, Oba Y, Bastos EL, Stevani CV, Yampolsky IV.

Sci Adv. 2017 Apr 26;3(4):e1602847. doi: 10.1126/sciadv.1602847. eCollection 2017 Apr.

10.

Selected Least Studied but not Forgotten Bioluminescent Systems.

Oba Y, Stevani CV, Oliveira AG, Tsarkova AS, Chepurnykh TV, Yampolsky IV.

Photochem Photobiol. 2017 Mar;93(2):405-415. doi: 10.1111/php.12704. Epub 2017 Feb 22. Review.

PMID:
28039876
11.

1001 lights: luciferins, luciferases, their mechanisms of action and applications in chemical analysis, biology and medicine.

Kaskova ZM, Tsarkova AS, Yampolsky IV.

Chem Soc Rev. 2016 Oct 24;45(21):6048-6077. Review.

PMID:
27711774
12.

A Tale Of Two Luciferins: Fungal and Earthworm New Bioluminescent Systems.

Tsarkova AS, Kaskova ZM, Yampolsky IV.

Acc Chem Res. 2016 Nov 15;49(11):2372-2380. Epub 2016 Sep 26.

PMID:
27696815
13.

Fluorescence imaging using synthetic GFP chromophores.

Walker CL, Lukyanov KA, Yampolsky IV, Mishin AS, Bommarius AS, Duraj-Thatte AM, Azizi B, Tolbert LM, Solntsev KM.

Curr Opin Chem Biol. 2015 Aug;27:64-74. doi: 10.1016/j.cbpa.2015.06.002. Epub 2015 Jun 24. Review.

PMID:
26117808
14.

The Chemical Basis of Fungal Bioluminescence.

Purtov KV, Petushkov VN, Baranov MS, Mineev KS, Rodionova NS, Kaskova ZM, Tsarkova AS, Petunin AI, Bondar VS, Rodicheva EK, Medvedeva SE, Oba Y, Oba Y, Arseniev AS, Lukyanov S, Gitelson JI, Yampolsky IV.

Angew Chem Int Ed Engl. 2015 Jul 6;54(28):8124-8. doi: 10.1002/anie.201501779. Epub 2015 Jun 11.

PMID:
26094784
15.

Novel mechanism of bioluminescence: oxidative decarboxylation of a moiety adjacent to the light emitter of Fridericia luciferin.

Dubinnyi MA, Kaskova ZM, Rodionova NS, Baranov MS, Gorokhovatsky AY, Kotlobay A, Solntsev KM, Tsarkova AS, Petushkov VN, Yampolsky IV.

Angew Chem Int Ed Engl. 2015 Jun 8;54(24):7065-7. doi: 10.1002/anie.201501668. Epub 2015 Apr 27.

PMID:
25913753
16.

Novel peptide chemistry in terrestrial animals: natural luciferin analogues from the bioluminescent earthworm Fridericia heliota.

Dubinnyi MA, Tsarkova AS, Petushkov VN, Kaskova ZM, Rodionova NS, Kovalchuk SI, Ziganshin RH, Baranov MS, Mineev KS, Yampolsky IV.

Chemistry. 2015 Mar 2;21(10):3942-7. doi: 10.1002/chem.201406498. Epub 2015 Feb 4.

PMID:
25650756
17.

Red-shifted fluorescent aminated derivatives of a conformationally locked GFP chromophore.

Baranov MS, Solntsev KM, Baleeva NS, Mishin AS, Lukyanov SA, Lukyanov KA, Yampolsky IV.

Chemistry. 2014 Oct 6;20(41):13234-41. doi: 10.1002/chem.201403678. Epub 2014 Aug 29.

PMID:
25171432
18.

A novel type of luciferin from the Siberian luminous earthworm Fridericia heliota: structure elucidation by spectral studies and total synthesis.

Petushkov VN, Dubinnyi MA, Tsarkova AS, Rodionova NS, Baranov MS, Kublitski VS, Shimomura O, Yampolsky IV.

Angew Chem Int Ed Engl. 2014 May 26;53(22):5566-8. doi: 10.1002/anie.201400529. Epub 2014 Apr 15.

PMID:
24737705
19.

Structure of the red fluorescent protein from a lancelet (Branchiostoma lanceolatum): a novel GYG chromophore covalently bound to a nearby tyrosine.

Pletnev VZ, Pletneva NV, Lukyanov KA, Souslova EA, Fradkov AF, Chudakov DM, Chepurnykh T, Yampolsky IV, Wlodawer A, Dauter Z, Pletnev S.

Acta Crystallogr D Biol Crystallogr. 2013 Sep;69(Pt 9):1850-60. doi: 10.1107/S0907444913015424. Epub 2013 Aug 17.

20.

Chemical introduction of the green fluorescence: imaging of cysteine cathepsins by an irreversibly locked GFP fluorophore.

Frizler M, Yampolsky IV, Baranov MS, Stirnberg M, Gütschow M.

Org Biomol Chem. 2013 Sep 21;11(35):5913-21. doi: 10.1039/c3ob41341a.

PMID:
23912233
21.

A synthetic approach to GFP chromophore analogs from 3-azidocinnamates. Role of methyl rotors in chromophore photophysics.

Baranov MS, Solntsev KM, Lukyanov KA, Yampolsky IV.

Chem Commun (Camb). 2013 Jun 28;49(51):5778-80. doi: 10.1039/c3cc41948g.

PMID:
23689612
22.

Tryptophan-based chromophore in fluorescent proteins can be anionic.

Sarkisyan KS, Yampolsky IV, Solntsev KM, Lukyanov SA, Lukyanov KA, Mishin AS.

Sci Rep. 2012;2:608. doi: 10.1038/srep00608. Epub 2012 Aug 29.

23.

Conformationally locked chromophores as models of excited-state proton transfer in fluorescent proteins.

Baranov MS, Lukyanov KA, Borissova AO, Shamir J, Kosenkov D, Slipchenko LV, Tolbert LM, Yampolsky IV, Solntsev KM.

J Am Chem Soc. 2012 Apr 4;134(13):6025-32. doi: 10.1021/ja3010144. Epub 2012 Mar 20.

PMID:
22404323
24.

A synthetic GFP-like chromophore undergoes base-catalyzed autoxidation into acylimine red form.

Ivashkin PE, Lukyanov KA, Lukyanov S, Yampolsky IV.

J Org Chem. 2011 Apr 15;76(8):2782-91. doi: 10.1021/jo200150b. Epub 2011 Mar 22.

PMID:
21391723
25.

Synthesis and spectral and chemical properties of the yellow fluorescent protein zFP538 chromophore.

Yampolsky IV, Balashova TA, Lukyanov KA.

Biochemistry. 2009 Aug 25;48(33):8077-82. doi: 10.1021/bi900719x.

PMID:
19610669
26.

Green fluorescent proteins are light-induced electron donors.

Bogdanov AM, Mishin AS, Yampolsky IV, Belousov VV, Chudakov DM, Subach FV, Verkhusha VV, Lukyanov S, Lukyanov KA.

Nat Chem Biol. 2009 Jul;5(7):459-61. doi: 10.1038/nchembio.174.

27.

The first mutant of the Aequorea victoria green fluorescent protein that forms a red chromophore.

Mishin AS, Subach FV, Yampolsky IV, King W, Lukyanov KA, Verkhusha VV.

Biochemistry. 2008 Apr 22;47(16):4666-73. doi: 10.1021/bi702130s. Epub 2008 Mar 27.

28.

Synthesis and properties of the red chromophore of the green-to-red photoconvertible fluorescent protein Kaede and its analogs.

Yampolsky IV, Kislukhin AA, Amatov TT, Shcherbo D, Potapov VK, Lukyanov S, Lukyanov KA.

Bioorg Chem. 2008 Apr;36(2):96-104. doi: 10.1016/j.bioorg.2007.12.003. Epub 2008 Feb 11.

29.

Structural basis for the fast maturation of Arthropoda green fluorescent protein.

Evdokimov AG, Pokross ME, Egorov NS, Zaraisky AG, Yampolsky IV, Merzlyak EM, Shkoporov AN, Sander I, Lukyanov KA, Chudakov DM.

EMBO Rep. 2006 Oct;7(10):1006-12. Epub 2006 Aug 25.

30.

Synthesis and properties of the chromophore of the asFP595 chromoprotein from Anemonia sulcata.

Yampolsky IV, Remington SJ, Martynov VI, Potapov VK, Lukyanov S, Lukyanov KA.

Biochemistry. 2005 Apr 19;44(15):5788-93.

PMID:
15823037
31.

New class of blue animal pigments based on Frizzled and Kringle protein domains.

Bulina ME, Lukyanov KA, Yampolsky IV, Chudakov DM, Staroverov DB, Shcheglov AS, Gurskaya NG, Lukyanov S.

J Biol Chem. 2004 Oct 15;279(42):43367-70. Epub 2004 Aug 5.

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