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Items: 1 to 50 of 61

1.

Complete genome sequence of natural rubber-degrading, gram-negative bacterium, Rhizobacter gummiphilus strain NS21T.

Linh DV, Gibu N, Tabata M, Imai S, Hosoyama A, Yamazoe A, Kasai D, Fukuda M.

Biotechnol Rep (Amst). 2019 Apr 1;22:e00332. doi: 10.1016/j.btre.2019.e00332. eCollection 2019 Jun.

2.

Ecological impact assessment of a bioaugmentation site on remediation of chlorinated ethylenes by multi-omics analysis.

Watahiki S, Kimura N, Yamazoe A, Miura T, Sekiguchi Y, Noda N, Matsukura S, Kasai D, Takahata Y, Nojiri H, Fukuda M.

J Gen Appl Microbiol. 2019 Mar 8. doi: 10.2323/jgam.2018.10.003. [Epub ahead of print]

3.

Reclassification of Nocardia species based on whole genome sequence and associated phenotypic data.

Tamura T, Ohji S, Ichikawa N, Hosoyama A, Yamazoe A, Hamada M, Komaki H, Shibata C, Matsuzawa T, Gonoi T, Suzuki KI, Fujita N.

J Antibiot (Tokyo). 2018 Jul;71(7):633-641. doi: 10.1038/s41429-018-0043-1. Epub 2018 Apr 4.

PMID:
29618770
4.

Proteobacteria and Bacteroidetes are major phyla of filterable bacteria passing through 0.22 μm pore size membrane filter, in Lake Sanaru, Hamamatsu, Japan.

Maejima Y, Kushimoto K, Muraguchi Y, Fukuda K, Miura T, Yamazoe A, Kimbara K, Shintani M.

Biosci Biotechnol Biochem. 2018 Jul;82(7):1260-1263. doi: 10.1080/09168451.2018.1456317. Epub 2018 Mar 29.

PMID:
29598452
5.

Complete Genome Sequence of the Polychlorinated Biphenyl-Degrading Bacterium Pseudomonas putida KF715 (NBRC 110667) Isolated from Biphenyl-Contaminated Soil.

Suenaga H, Yamazoe A, Hosoyama A, Kimura N, Hirose J, Watanabe T, Fujihara H, Futagami T, Goto M, Furukawa K.

Genome Announc. 2017 Feb 16;5(7). pii: e01624-16. doi: 10.1128/genomeA.01624-16.

6.

Phylogenetic analysis reveals the taxonomically diverse distribution of the Pseudomonas putida group.

Yonezuka K, Shimodaira J, Tabata M, Ohji S, Hosoyama A, Kasai D, Yamazoe A, Fujita N, Ezaki T, Fukuda M.

J Gen Appl Microbiol. 2017 Mar 17;63(1):1-10. doi: 10.2323/jgam.2016.06.003. Epub 2016 Dec 17.

7.

Biodegradation of high concentrations of mixed polycyclic aromatic hydrocarbons by indigenous bacteria from a river sediment: a microcosm study and bacterial community analysis.

Muangchinda C, Yamazoe A, Polrit D, Thoetkiattikul H, Mhuantong W, Champreda V, Pinyakong O.

Environ Sci Pollut Res Int. 2017 Feb;24(5):4591-4602. doi: 10.1007/s11356-016-8185-9. Epub 2016 Dec 12.

PMID:
27957694
8.

Culture-independent study of bacterial communities in tropical river sediment.

Thoetkiattikul H, Mhuantong W, Pinyakong O, Wisawapipat W, Yamazoe A, Fujita N, Eurwilaichitr L, Champreda V.

Biosci Biotechnol Biochem. 2017 Jan;81(1):200-209. Epub 2016 Sep 27.

PMID:
27671140
9.

Draft Genome Sequence of Comamonas thiooxydans Strain PHE2-6 (NBRC 110656), a Chlorinated-Ethene-Degrading Bacterium.

Shimodaira J, Yonezuka K, Tabata M, Nagase S, Kasai D, Hosoyama A, Yamazoe A, Fujita N, Fukuda M.

Genome Announc. 2016 Jun 23;4(3). pii: e00487-16. doi: 10.1128/genomeA.00487-16.

10.

Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC 111660), a Polyethylene Glycol Degrader.

Ohtsubo Y, Nonoyama S, Nagata Y, Numata M, Tsuchikane K, Hosoyama A, Yamazoe A, Tsuda M, Fujita N, Kawai F.

Genome Announc. 2016 Jun 9;4(3). pii: e00530-16. doi: 10.1128/genomeA.00530-16.

11.

Complete Genome Sequence of Sphingopyxis macrogoltabida Strain 203N (NBRC 111659), a Polyethylene Glycol Degrader.

Ohtsubo Y, Nonoyama S, Nagata Y, Numata M, Tsuchikane K, Hosoyama A, Yamazoe A, Tsuda M, Fujita N, Kawai F.

Genome Announc. 2016 Jun 9;4(3). pii: e00529-16. doi: 10.1128/genomeA.00529-16.

12.

Isolation and characterization of a bacterial strain that degrades cis-dichloroethenein the absence of aromatic inducers.

Yonezuka K, Araki N, Shimodaira J, Ohji S, Hosoyama A, Numata M, Yamazoe A, Kasai D, Masai E, Fujita N, Ezaki T, Fukuda M.

J Gen Appl Microbiol. 2016 Jul 14;62(3):118-25. doi: 10.2323/jgam.2015.12.002. Epub 2016 May 23.

13.

Phylogenetics of family Enterobacteriaceae and proposal to reclassify Escherichia hermannii and Salmonella subterranea as Atlantibacter hermannii and Atlantibacter subterranea gen. nov., comb. nov.

Hata H, Natori T, Mizuno T, Kanazawa I, Eldesouky I, Hayashi M, Miyata M, Fukunaga H, Ohji S, Hosoyama A, Aono E, Yamazoe A, Tsuchikane K, Fujita N, Ezaki T.

Microbiol Immunol. 2016 May;60(5):303-11. doi: 10.1111/1348-0421.12374.

14.

Draft Genome Sequence of a Chlorinated-Ethene Degrader, Cupriavidus necator Strain PHE3-6 (NBRC 110655).

Yonezuka K, Shimodaira J, Tabata M, Nagase S, Kasai D, Hosoyama A, Yamazoe A, Fujita N, Fukuda M.

Genome Announc. 2016 Mar 3;4(2). pii: e01743-15. doi: 10.1128/genomeA.01743-15.

15.

Complete Genome Sequence of Sphingopyxis macrogoltabida Type Strain NBRC 15033, Originally Isolated as a Polyethylene Glycol Degrader.

Ohtsubo Y, Nagata Y, Numata M, Tsuchikane K, Hosoyama A, Yamazoe A, Tsuda M, Fujita N, Kawai F.

Genome Announc. 2015 Dec 10;3(6). pii: e01401-15. doi: 10.1128/genomeA.01401-15.

16.

Complete Genome Sequence of a Polypropylene Glycol-Degrading Strain, Microbacterium sp. No. 7.

Ohtsubo Y, Nagata Y, Numata M, Tsuchikane K, Hosoyama A, Yamazoe A, Tsuda M, Fujita N, Kawai F.

Genome Announc. 2015 Dec 10;3(6). pii: e01400-15. doi: 10.1128/genomeA.01400-15.

17.

Complete Genome Sequence of Polypropylene Glycol- and Polyethylene Glycol-Degrading Sphingopyxis macrogoltabida Strain EY-1.

Ohtsubo Y, Nagata Y, Numata M, Tsuchikane K, Hosoyama A, Yamazoe A, Tsuda M, Fujita N, Kawai F.

Genome Announc. 2015 Dec 3;3(6). pii: e01399-15. doi: 10.1128/genomeA.01399-15.

18.

Complete genome sequencing of Dehalococcoides sp. strain UCH007 using a differential reads picking method.

Uchino Y, Miura T, Hosoyama A, Ohji S, Yamazoe A, Ito M, Takahata Y, Suzuki K, Fujita N.

Stand Genomic Sci. 2015 Nov 14;10:102. doi: 10.1186/s40793-015-0095-9. eCollection 2015.

19.

Draft Genome Sequence of the Polychlorinated Biphenyl-Degrading Bacterium Pseudomonas stutzeri KF716 (NBRC 110668).

Hirose J, Yamazoe A, Hosoyama A, Kimura N, Suenaga H, Watanabe T, Fujihara H, Futagami T, Goto M, Furukawa K.

Genome Announc. 2015 Oct 22;3(5). pii: e01215-15. doi: 10.1128/genomeA.01215-15.

20.

Draft Genome Sequence of the Polychlorinated Biphenyl-Degrading Bacterium Comamonas testosteroni KF712 (NBRC 110673).

Hirose J, Yamazoe A, Hosoyama A, Kimura N, Suenaga H, Watanabe T, Fujihara H, Futagami T, Goto M, Furukawa K.

Genome Announc. 2015 Oct 15;3(5). pii: e01214-15. doi: 10.1128/genomeA.01214-15.

21.

Complete Genome Sequence of Polyvinyl Alcohol-Degrading Strain Sphingopyxis sp. 113P3 (NBRC 111507).

Ohtsubo Y, Nagata Y, Numata M, Tsuchikane K, Hosoyama A, Yamazoe A, Tsuda M, Fujita N, Kawai F.

Genome Announc. 2015 Oct 15;3(5). pii: e01169-15. doi: 10.1128/genomeA.01169-15.

22.

Effects of phosphate addition on methane fermentation in the batch and upflow anaerobic sludge blanket (UASB) reactors.

Suzuki S, Shintani M, Sanchez ZK, Kimura K, Numata M, Yamazoe A, Kimbara K.

Appl Microbiol Biotechnol. 2015 Dec;99(24):10457-66. doi: 10.1007/s00253-015-6942-1. Epub 2015 Sep 9.

PMID:
26350145
23.

Significance of Markers of Systemic Inflammation for Predicting Survival and Chemotherapeutic Outcomes and Monitoring Tumor Progression in Patients with Unresectable Metastatic Colorectal Cancer.

Shibutani M, Maeda K, Nagahara H, Ohtani H, Sakurai K, Yamazoe A, Kimura K, Toyokawa T, Amano R, Kubo N, Tanaka H, Muguruma K, Ohira M, Hirakawa K.

Anticancer Res. 2015 Sep;35(9):5037-46.

PMID:
26254405
24.

Draft Genome Sequence of Comamonas sp. Strain E6 (NBRC 107749), a Degrader of Phthalate Isomers through the Protocatechuate 4,5-Cleavage Pathway.

Shimodaira J, Kamimura N, Hosoyama A, Yamazoe A, Fujita N, Masai E.

Genome Announc. 2015 Jun 18;3(3). pii: e00643-15. doi: 10.1128/genomeA.00643-15.

25.

Draft Genome Sequence of Pseudomonas aeruginosa KF702 (NBRC 110665), a Polychlorinated Biphenyl-Degrading Bacterium Isolated from Biphenyl-Contaminated Soil.

Fujihara H, Yamazoe A, Hosoyama A, Suenaga H, Kimura N, Hirose J, Watanabe T, Futagami T, Goto M, Furukawa K.

Genome Announc. 2015 May 21;3(3). pii: e00517-15. doi: 10.1128/genomeA.00517-15.

26.

Draft Genome Sequence of Pseudomonas abietaniphila KF701 (NBRC110664), a Polychlorinated Biphenyl-Degrading Bacterium Isolated from Biphenyl-Contaminated Soil.

Fujihara H, Yamazoe A, Hosoyama A, Suenaga H, Kimura N, Hirose J, Watanabe T, Futagami T, Goto M, Furukawa K.

Genome Announc. 2015 May 14;3(3). pii: e00473-15. doi: 10.1128/genomeA.00473-15.

27.

The Impact of Injections of Different Nutrients on the Bacterial Community and Its Dechlorination Activity in Chloroethene-Contaminated Groundwater.

Miura T, Yamazoe A, Ito M, Ohji S, Hosoyama A, Takahata Y, Fujita N.

Microbes Environ. 2015;30(2):164-71. doi: 10.1264/jsme2.ME14127. Epub 2015 Apr 15.

28.

Draft Genome Sequence of Pseudomonas toyotomiensis KF710, a Polychlorinated Biphenyl-Degrading Bacterium Isolated from Biphenyl-Contaminated Soil.

Watanabe T, Yamazoe A, Hosoyama A, Fujihara H, Suenaga H, Hirose J, Futagami T, Goto M, Kimura N, Furukawa K.

Genome Announc. 2015 Apr 2;3(2). pii: e00223-15. doi: 10.1128/genomeA.00223-15.

29.

Complete Genome Sequences of Sulfurospirillum Strains UCH001 and UCH003 Isolated from Groundwater in Japan.

Miura T, Uchino Y, Tsuchikane K, Ohtsubo Y, Ohji S, Hosoyama A, Ito M, Takahata Y, Yamazoe A, Suzuki K, Fujita N.

Genome Announc. 2015 Mar 26;3(2). pii: e00236-15. doi: 10.1128/genomeA.00236-15.

30.

Draft Genome Sequence of Cupriavidus pauculus Strain KF709, a Biphenyl-Utilizing Bacterium Isolated from Biphenyl-Contaminated Soil.

Watanabe T, Yamazoe A, Hosoyama A, Fujihara H, Suenaga H, Hirose J, Futagami T, Goto M, Kimura N, Furukawa K.

Genome Announc. 2015 Mar 26;3(2). pii: e00222-15. doi: 10.1128/genomeA.00222-15.

31.

Draft Genome Sequence of the Polychlorinated Biphenyl-Degrading Bacterium Cupriavidus basilensis KF708 (NBRC 110671) Isolated from Biphenyl-Contaminated Soil.

Suenaga H, Yamazoe A, Hosoyama A, Kimura N, Hirose J, Watanabe T, Fujihara H, Futagami T, Goto M, Furukawa K.

Genome Announc. 2015 Mar 19;3(2). pii: e00143-15. doi: 10.1128/genomeA.00143-15.

32.

Draft Genome Sequence of the Polychlorinated Biphenyl-Degrading Bacterium Pseudomonas putida KF703 (NBRC 110666) Isolated from Biphenyl-Contaminated Soil.

Suenaga H, Yamazoe A, Hosoyama A, Kimura N, Hirose J, Watanabe T, Fujihara H, Futagami T, Goto M, Furukawa K.

Genome Announc. 2015 Mar 19;3(2). pii: e00142-15. doi: 10.1128/genomeA.00142-15.

33.

Draft Genome Sequence of Pseudomonas abietaniphila KF717 (NBRC 110669), Isolated from Biphenyl-Contaminated Soil in Japan.

Kimura N, Yamazoe A, Hosoyama A, Hirose J, Watanabe T, Suenaga H, Fujihara H, Futagami T, Goto M, Furukawa K.

Genome Announc. 2015 Mar 19;3(2). pii: e00059-15. doi: 10.1128/genomeA.00059-15.

34.

Draft Genome Sequence of Acinetobacter calcoaceticus Strain P23, a Plant Growth-Promoting Bacterium of Duckweed.

Sugawara M, Hosoyama A, Yamazoe A, Morikawa M.

Genome Announc. 2015 Feb 26;3(1). pii: e00026-15. doi: 10.1128/genomeA.00026-15.

35.

Complete Genome Sequence of a Dimethyl Sulfide-Utilizing Bacterium, Acinetobacter guillouiae Strain 20B (NBRC 110550).

Yee L, Hosoyama A, Ohji S, Tsuchikane K, Shimodaira J, Yamazoe A, Fujita N, Suzuki-Minakuchi C, Nojiri H.

Genome Announc. 2014 Oct 16;2(5). pii: e01048-14. doi: 10.1128/genomeA.01048-14.

36.

Complete Genome Sequence of Polychlorinated Biphenyl Degrader Comamonas testosteroni TK102 (NBRC 109938).

Fukuda K, Hosoyama A, Tsuchikane K, Ohji S, Yamazoe A, Fujita N, Shintani M, Kimbara K.

Genome Announc. 2014 Sep 11;2(5). pii: e00865-14. doi: 10.1128/genomeA.00865-14.

37.

Complete Genome Sequence of an Alkane Degrader, Alcanivorax sp. Strain NBRC 101098.

Miura T, Tsuchikane K, Numata M, Hashimoto M, Hosoyama A, Ohji S, Yamazoe A, Fujita N.

Genome Announc. 2014 Aug 14;2(4). pii: e00766-14. doi: 10.1128/genomeA.00766-14.

38.

Thermotoga profunda sp. nov. and Thermotoga caldifontis sp. nov., anaerobic thermophilic bacteria isolated from terrestrial hot springs.

Mori K, Yamazoe A, Hosoyama A, Ohji S, Fujita N, Ishibashi J, Kimura H, Suzuki K.

Int J Syst Evol Microbiol. 2014 Jun;64(Pt 6):2128-36. doi: 10.1099/ijs.0.060137-0. Epub 2014 Mar 27.

PMID:
24676729
39.

The Complete Genome Sequence of Pseudomonas putida NBRC 14164T Confirms High Intraspecies Variation.

Ohji S, Yamazoe A, Hosoyama A, Tsuchikane K, Ezaki T, Fujita N.

Genome Announc. 2014 Feb 13;2(1). pii: e00029-14. doi: 10.1128/genomeA.00029-14.

40.

Complete Genome Sequence of the Thermophilic Polychlorinated Biphenyl Degrader Geobacillus sp. Strain JF8 (NBRC 109937).

Shintani M, Ohtsubo Y, Fukuda K, Hosoyama A, Ohji S, Yamazoe A, Fujita N, Nagata Y, Tsuda M, Hatta T, Kimbara K.

Genome Announc. 2014 Jan 23;2(1). pii: e01213-13. doi: 10.1128/genomeA.01213-13.

41.

Single-cell analyses revealed transfer ranges of IncP-1, IncP-7, and IncP-9 plasmids in a soil bacterial community.

Shintani M, Matsui K, Inoue J, Hosoyama A, Ohji S, Yamazoe A, Nojiri H, Kimbara K, Ohkuma M.

Appl Environ Microbiol. 2014 Jan;80(1):138-45. doi: 10.1128/AEM.02571-13. Epub 2013 Oct 18.

42.

Complete Genome Sequence of the Carbazole Degrader Pseudomonas resinovorans Strain CA10 (NBRC 106553).

Shintani M, Hosoyama A, Ohji S, Tsuchikane K, Takarada H, Yamazoe A, Fujita N, Nojiri H.

Genome Announc. 2013 Jul 25;1(4). pii: e00488-13. doi: 10.1128/genomeA.00488-13.

43.

Rhizobacter gummiphilus sp. nov., a rubber-degrading bacterium isolated from the soil of a botanical garden in Japan.

Imai S, Yoshida R, Endo Y, Fukunaga Y, Yamazoe A, Kasai D, Masai E, Fukuda M.

J Gen Appl Microbiol. 2013;59(3):199-205.

44.

Draft Genome Sequences of Elizabethkingia meningoseptica.

Matyi SA, Hoyt PR, Hosoyama A, Yamazoe A, Fujita N, Gustafson JE.

Genome Announc. 2013 Jul 11;1(4). pii: e00444-13. doi: 10.1128/genomeA.00444-13.

45.

A genome sequence-based approach to taxonomy of the genus Nocardia.

Tamura T, Matsuzawa T, Oji S, Ichikawa N, Hosoyama A, Katsumata H, Yamazoe A, Hamada M, Suzuki K, Gonoi T, Fujita N.

Antonie Van Leeuwenhoek. 2012 Oct;102(3):481-91. Epub 2012 Jul 27.

PMID:
22836677
46.

Alkane-degrading properties of Dietzia sp. H0B, a key player in the Prestige oil spill biodegradation (NW Spain).

Alonso-Gutiérrez J, Teramoto M, Yamazoe A, Harayama S, Figueras A, Novoa B.

J Appl Microbiol. 2011 Oct;111(4):800-10. doi: 10.1111/j.1365-2672.2011.05104.x. Epub 2011 Aug 4.

47.

Degradation of natural estrogen and identification of the metabolites produced by soil isolates of Rhodococcus sp. and Sphingomonas sp.

Kurisu F, Ogura M, Saitoh S, Yamazoe A, Yagi O.

J Biosci Bioeng. 2010 Jun;109(6):576-82. doi: 10.1016/j.jbiosc.2009.11.006. Epub 2009 Dec 2.

PMID:
20471597
48.

Active core structure of terfestatin A, a new specific inhibitor of auxin signaling.

Hayashi K, Yamazoe A, Ishibashi Y, Kusaka N, Oono Y, Nozaki H.

Bioorg Med Chem. 2008 May 1;16(9):5331-44. doi: 10.1016/j.bmc.2008.02.085. Epub 2008 Mar 4.

PMID:
18343120
50.

Abundance, diversity, and dynamics of viruses on microorganisms in activated sludge processes.

Otawa K, Lee SH, Yamazoe A, Onuki M, Satoh H, Mino T.

Microb Ecol. 2007 Jan;53(1):143-52. Epub 2006 Dec 13.

PMID:
17165120

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