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Items: 46

1.

Generative Cell Specification Requires Transcription Factors Evolutionarily Conserved in Land Plants.

Yamaoka S, Nishihama R, Yoshitake Y, Ishida S, Inoue K, Saito M, Okahashi K, Bao H, Nishida H, Yamaguchi K, Shigenobu S, Ishizaki K, Yamato KT, Kohchi T.

Curr Biol. 2018 Feb 5;28(3):479-486.e5. doi: 10.1016/j.cub.2017.12.053. Epub 2018 Jan 25.

PMID:
29395928
2.

Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome.

Bowman JL, Kohchi T, Yamato KT, Jenkins J, Shu S, Ishizaki K, Yamaoka S, Nishihama R, Nakamura Y, Berger F, Adam C, Aki SS, Althoff F, Araki T, Arteaga-Vazquez MA, Balasubrmanian S, Barry K, Bauer D, Boehm CR, Briginshaw L, Caballero-Perez J, Catarino B, Chen F, Chiyoda S, Chovatia M, Davies KM, Delmans M, Demura T, Dierschke T, Dolan L, Dorantes-Acosta AE, Eklund DM, Florent SN, Flores-Sandoval E, Fujiyama A, Fukuzawa H, Galik B, Grimanelli D, Grimwood J, Grossniklaus U, Hamada T, Haseloff J, Hetherington AJ, Higo A, Hirakawa Y, Hundley HN, Ikeda Y, Inoue K, Inoue SI, Ishida S, Jia Q, Kakita M, Kanazawa T, Kawai Y, Kawashima T, Kennedy M, Kinose K, Kinoshita T, Kohara Y, Koide E, Komatsu K, Kopischke S, Kubo M, Kyozuka J, Lagercrantz U, Lin SS, Lindquist E, Lipzen AM, Lu CW, De Luna E, Martienssen RA, Minamino N, Mizutani M, Mizutani M, Mochizuki N, Monte I, Mosher R, Nagasaki H, Nakagami H, Naramoto S, Nishitani K, Ohtani M, Okamoto T, Okumura M, Phillips J, Pollak B, Reinders A, Rövekamp M, Sano R, Sawa S, Schmid MW, Shirakawa M, Solano R, Spunde A, Suetsugu N, Sugano S, Sugiyama A, Sun R, Suzuki Y, Takenaka M, Takezawa D, Tomogane H, Tsuzuki M, Ueda T, Umeda M, Ward JM, Watanabe Y, Yazaki K, Yokoyama R, Yoshitake Y, Yotsui I, Zachgo S, Schmutz J.

Cell. 2017 Oct 5;171(2):287-304.e15. doi: 10.1016/j.cell.2017.09.030.

3.

"Fusion" in fertilization: interdisciplinary collaboration among plant and animal scientists.

Yamato KT, Kuchitsu K.

J Plant Res. 2017 May;130(3):419-421. doi: 10.1007/s10265-017-0937-1. Epub 2017 Apr 10. No abstract available.

PMID:
28396963
4.

n-Hexanal and (Z)-3-hexenal are generated from arachidonic acid and linolenic acid by a lipoxygenase in Marchantia polymorpha L.

Tawfik MM, Yamato KT, Kohchi T, Koeduka T, Matsui K.

Biosci Biotechnol Biochem. 2017 Jun;81(6):1148-1155. doi: 10.1080/09168451.2017.1285688. Epub 2017 Feb 6.

PMID:
28162041
5.

Dynamic reorganization of the endomembrane system during spermatogenesis in Marchantia polymorpha.

Minamino N, Kanazawa T, Nishihama R, Yamato KT, Ishizaki K, Kohchi T, Nakano A, Ueda T.

J Plant Res. 2017 May;130(3):433-441. doi: 10.1007/s10265-017-0909-5. Epub 2017 Feb 3.

PMID:
28160149
6.

Transcriptome and proteome analyses provide insight into laticifer's defense of Euphorbia tirucalli against pests.

Kitajima S, Miura K, Aoki W, Yamato KT, Taira T, Murakami R, Aburaya S.

Plant Physiol Biochem. 2016 Nov;108:434-446. doi: 10.1016/j.plaphy.2016.08.008. Epub 2016 Aug 18.

PMID:
27566924
7.

An Evolutionarily Conserved Plant RKD Factor Controls Germ Cell Differentiation.

Koi S, Hisanaga T, Sato K, Shimamura M, Yamato KT, Ishizaki K, Kohchi T, Nakajima K.

Curr Biol. 2016 Jul 11;26(13):1775-1781. doi: 10.1016/j.cub.2016.05.013. Epub 2016 Jun 23.

8.

Identification of miRNAs and Their Targets in the Liverwort Marchantia polymorpha by Integrating RNA-Seq and Degradome Analyses.

Lin PC, Lu CW, Shen BN, Lee GZ, Bowman JL, Arteaga-Vazquez MA, Liu LY, Hong SF, Lo CF, Su GM, Kohchi T, Ishizaki K, Zachgo S, Althoff F, Takenaka M, Yamato KT, Lin SS.

Plant Cell Physiol. 2016 Feb;57(2):339-58. doi: 10.1093/pcp/pcw020. Epub 2016 Feb 9.

9.

Transcriptional Framework of Male Gametogenesis in the Liverwort Marchantia polymorpha L.

Higo A, Niwa M, Yamato KT, Yamada L, Sawada H, Sakamoto T, Kurata T, Shirakawa M, Endo M, Shigenobu S, Yamaguchi K, Ishizaki K, Nishihama R, Kohchi T, Araki T.

Plant Cell Physiol. 2016 Feb;57(2):325-38. doi: 10.1093/pcp/pcw005. Epub 2016 Feb 8.

PMID:
26858289
10.

The Naming of Names: Guidelines for Gene Nomenclature in Marchantia.

Bowman JL, Araki T, Arteaga-Vazquez MA, Berger F, Dolan L, Haseloff J, Ishizaki K, Kyozuka J, Lin SS, Nagasaki H, Nakagami H, Nakajima K, Nakamura Y, Ohashi-Ito K, Sawa S, Shimamura M, Solano R, Tsukaya H, Ueda T, Watanabe Y, Yamato KT, Zachgo S, Kohchi T.

Plant Cell Physiol. 2016 Feb;57(2):257-61. doi: 10.1093/pcp/pcv193. Epub 2015 Dec 7. Review.

11.

Cryopreservation of Gemmae from the Liverwort Marchantia polymorpha L.

Tanaka D, Ishizaki K, Kohchi T, Yamato KT.

Plant Cell Physiol. 2016 Feb;57(2):300-6. doi: 10.1093/pcp/pcv173. Epub 2015 Nov 11.

12.

Abscisic acid-induced gene expression in the liverwort Marchantia polymorpha is mediated by evolutionarily conserved promoter elements.

Ghosh TK, Kaneko M, Akter K, Murai S, Komatsu K, Ishizaki K, Yamato KT, Kohchi T, Takezawa D.

Physiol Plant. 2016 Apr;156(4):407-20. doi: 10.1111/ppl.12385. Epub 2015 Oct 12.

PMID:
26456006
13.

Molecular Genetic Tools and Techniques for Marchantia polymorpha Research.

Ishizaki K, Nishihama R, Yamato KT, Kohchi T.

Plant Cell Physiol. 2016 Feb;57(2):262-70. doi: 10.1093/pcp/pcv097. Epub 2015 Jun 26. Review.

PMID:
26116421
14.

SNARE Molecules in Marchantia polymorpha: Unique and Conserved Features of the Membrane Fusion Machinery.

Kanazawa T, Era A, Minamino N, Shikano Y, Fujimoto M, Uemura T, Nishihama R, Yamato KT, Ishizaki K, Nishiyama T, Kohchi T, Nakano A, Ueda T.

Plant Cell Physiol. 2016 Feb;57(2):307-24. doi: 10.1093/pcp/pcv076. Epub 2015 May 27.

PMID:
26019268
15.

Arachidonic acid-dependent carbon-eight volatile synthesis from wounded liverwort (Marchantia polymorpha).

Kihara H, Tanaka M, Yamato KT, Horibata A, Yamada A, Kita S, Ishizaki K, Kajikawa M, Fukuzawa H, Kohchi T, Akakabe Y, Matsui K.

Phytochemistry. 2014 Nov;107:42-9. doi: 10.1016/j.phytochem.2014.08.008. Epub 2014 Aug 28.

PMID:
25174554
16.

Phototropin encoded by a single-copy gene mediates chloroplast photorelocation movements in the liverwort Marchantia polymorpha.

Komatsu A, Terai M, Ishizaki K, Suetsugu N, Tsuboi H, Nishihama R, Yamato KT, Wada M, Kohchi T.

Plant Physiol. 2014 Sep;166(1):411-27. doi: 10.1104/pp.114.245100. Epub 2014 Aug 5.

17.

Co-option of a photoperiodic growth-phase transition system during land plant evolution.

Kubota A, Kita S, Ishizaki K, Nishihama R, Yamato KT, Kohchi T.

Nat Commun. 2014 Apr 22;5:3668. doi: 10.1038/ncomms4668.

PMID:
24752248
18.

Physcomitrella patens has kinase-LRR R gene homologs and interacting proteins.

Tanigaki Y, Ito K, Obuchi Y, Kosaka A, Yamato KT, Okanami M, Lehtonen MT, Valkonen JP, Akita M.

PLoS One. 2014 Apr 18;9(4):e95118. doi: 10.1371/journal.pone.0095118. eCollection 2014.

19.

Plastid transformation of sporelings and suspension-cultured cells from the liverwort Marchantia polymorpha L.

Chiyoda S, Yamato KT, Kohchi T.

Methods Mol Biol. 2014;1132:439-47. doi: 10.1007/978-1-62703-995-6_30.

PMID:
24599873
20.

Visualization of auxin-mediated transcriptional activation using a common auxin-responsive reporter system in the liverwort Marchantia polymorpha.

Ishizaki K, Nonomura M, Kato H, Yamato KT, Kohchi T.

J Plant Res. 2012 Sep;125(5):643-51. doi: 10.1007/s10265-012-0477-7. Epub 2012 Feb 4.

PMID:
22311005
21.

Comparative study of gene expression and major proteins' function of laticifers in lignified and unlignified organs of mulberry.

Kitajima S, Taira T, Oda K, Yamato KT, Inukai Y, Hori Y.

Planta. 2012 Mar;235(3):589-601. doi: 10.1007/s00425-011-1533-6. Epub 2011 Oct 13.

PMID:
21993816
22.

ANGUSTIFOLIA, a plant homolog of CtBP/BARS, functions outside the nucleus.

Minamisawa N, Sato M, Cho KH, Ueno H, Takechi K, Kajikawa M, Yamato KT, Ohyama K, Toyooka K, Kim GT, Horiguchi G, Takano H, Ueda T, Tsukaya H.

Plant J. 2011 Dec;68(5):788-99. doi: 10.1111/j.1365-313X.2011.04731.x. Epub 2011 Sep 14.

23.

Evolutionarily conserved regulatory mechanisms of abscisic acid signaling in land plants: characterization of ABSCISIC ACID INSENSITIVE1-like type 2C protein phosphatase in the liverwort Marchantia polymorpha.

Tougane K, Komatsu K, Bhyan SB, Sakata Y, Ishizaki K, Yamato KT, Kohchi T, Takezawa D.

Plant Physiol. 2010 Mar;152(3):1529-43. doi: 10.1104/pp.110.153387. Epub 2010 Jan 22.

24.

Application of Lifeact reveals F-actin dynamics in Arabidopsis thaliana and the liverwort, Marchantia polymorpha.

Era A, Tominaga M, Ebine K, Awai C, Saito C, Ishizaki K, Yamato KT, Kohchi T, Nakano A, Ueda T.

Plant Cell Physiol. 2009 Jun;50(6):1041-8. doi: 10.1093/pcp/pcp055. Epub 2009 Apr 15.

25.

Cloning and characterization of a squalene synthase gene from a petroleum plant, Euphorbia tirucalli L.

Uchida H, Yamashita H, Kajikawa M, Ohyama K, Nakayachi O, Sugiyama R, Yamato KT, Muranaka T, Fukuzawa H, Takemura M, Ohyama K.

Planta. 2009 May;229(6):1243-52. doi: 10.1007/s00425-009-0906-6. Epub 2009 Mar 13.

PMID:
19283408
26.

Direct transformation of the liverwort Marchantia polymorpha L. by particle bombardment using immature thalli developing from spores.

Chiyoda S, Ishizaki K, Kataoka H, Yamato KT, Kohchi T.

Plant Cell Rep. 2008 Sep;27(9):1467-73. doi: 10.1007/s00299-008-0570-5. Epub 2008 Jun 14.

PMID:
18553085
27.

Agrobacterium-mediated transformation of the haploid liverwort Marchantia polymorpha L., an emerging model for plant biology.

Ishizaki K, Chiyoda S, Yamato KT, Kohchi T.

Plant Cell Physiol. 2008 Jul;49(7):1084-91. doi: 10.1093/pcp/pcn085. Epub 2008 Jun 5.

PMID:
18535011
28.

Production of arachidonic and eicosapentaenoic acids in plants using bryophyte fatty acid Delta6-desaturase, Delta6-elongase, and Delta5-desaturase genes.

Kajikawa M, Matsui K, Ochiai M, Tanaka Y, Kita Y, Ishimoto M, Kohzu Y, Shoji S, Yamato KT, Ohyama K, Fukuzawa H, Kohchi T.

Biosci Biotechnol Biochem. 2008 Feb;72(2):435-44. Epub 2008 Feb 7.

29.

Gene organization of the liverwort Y chromosome reveals distinct sex chromosome evolution in a haploid system.

Yamato KT, Ishizaki K, Fujisawa M, Okada S, Nakayama S, Fujishita M, Bando H, Yodoya K, Hayashi K, Bando T, Hasumi A, Nishio T, Sakata R, Yamamoto M, Yamaki A, Kajikawa M, Yamano T, Nishide T, Choi SH, Shimizu-Ueda Y, Hanajiri T, Sakaida M, Kono K, Takenaka M, Yamaoka S, Kuriyama C, Kohzu Y, Nishida H, Brennicke A, Shin-i T, Kohara Y, Kohchi T, Fukuzawa H, Ohyama K.

Proc Natl Acad Sci U S A. 2007 Apr 10;104(15):6472-7. Epub 2007 Mar 29.

30.

Simple and efficient plastid transformation system for the liverwort Marchantia polymorpha L. suspension-culture cells.

Chiyoda S, Linley PJ, Yamato KT, Fukuzawa H, Yokota A, Kohchi T.

Transgenic Res. 2007 Feb;16(1):41-9. Epub 2006 Nov 11.

PMID:
17103028
31.

Isolation and functional characterization of fatty acid delta5-elongase gene from the liverwort Marchantia polymorpha L.

Kajikawa M, Yamato KT, Sakai Y, Fukuzawa H, Ohyama K, Kohchi T.

FEBS Lett. 2006 Jan 9;580(1):149-54. Epub 2005 Dec 6.

32.

A front-end desaturase from Chlamydomonas reinhardtii produces pinolenic and coniferonic acids by omega13 desaturation in methylotrophic yeast and tobacco.

Kajikawa M, Yamato KT, Kohzu Y, Shoji S, Matsui K, Tanaka Y, Sakai Y, Fukuzawa H.

Plant Cell Physiol. 2006 Jan;47(1):64-73. Epub 2005 Nov 2.

PMID:
16267098
33.

Cloning and characterization of a cDNA encoding beta-amyrin synthase from petroleum plant Euphorbia tirucalli L.

Kajikawa M, Yamato KT, Fukuzawa H, Sakai Y, Uchida H, Ohyama K.

Phytochemistry. 2005 Aug;66(15):1759-66.

PMID:
16005035
34.
35.

Expression profiling-based identification of CO2-responsive genes regulated by CCM1 controlling a carbon-concentrating mechanism in Chlamydomonas reinhardtii.

Miura K, Yamano T, Yoshioka S, Kohinata T, Inoue Y, Taniguchi F, Asamizu E, Nakamura Y, Tabata S, Yamato KT, Ohyama K, Fukuzawa H.

Plant Physiol. 2004 Jul;135(3):1595-607. Epub 2004 Jul 2.

36.

Evolution of ribosomal DNA unit on the X chromosome independent of autosomal units in the liverwort Marchantia polymorpha.

Fujisawa M, Nakayama S, Nishio T, Fujishita M, Hayashi K, Ishizaki K, Kajikawa M, Yamato KT, Fukuzawa H, Ohyama K.

Chromosome Res. 2003;11(7):695-703.

PMID:
14606631
37.

MpFAE3, a beta-ketoacyl-CoA synthase gene in the liverwort Marchantia polymorpha L., is preferentially involved in elongation of palmitic acid to stearic acid.

Kajikawa M, Yamato KT, Kanamaru H, Sakuradani E, Shimizu S, Fukuzawa H, Sakai Y, Ohyama K.

Biosci Biotechnol Biochem. 2003 Aug;67(8):1667-74.

38.

Functional analysis of a beta-ketoacyl-CoA synthase gene, MpFAE2, by gene silencing in the liverwort Marchantia polymorpha L.

Kajikawa M, Yamaoka S, Yamato KT, Kanamaru H, Sakuradani E, Shimizu S, Fukuzawa H, Ohyama K.

Biosci Biotechnol Biochem. 2003 Mar;67(3):605-12.

39.

Multicopy genes uniquely amplified in the Y chromosome-specific repeats of the liverwort Marchantia polymorpha.

Ishizaki K, Shimizu-Ueda Y, Okada S, Yamamoto M, Fujisawa M, Yamato KT, Fukuzawa H, Ohyama K.

Nucleic Acids Res. 2002 Nov 1;30(21):4675-81.

40.

Isolation of X and Y chromosome-specific DNA markers from a liverwort, Marchantia polymorpha, by representational difference analysis.

Fujisawa M, Hayashi K, Nishio T, Bando T, Okada S, Yamato KT, Fukuzawa H, Ohyama K.

Genetics. 2001 Nov;159(3):981-5.

41.

The Y chromosome in the liverwort Marchantia polymorpha has accumulated unique repeat sequences harboring a male-specific gene.

Okada S, Sone T, Fujisawa M, Nakayama S, Takenaka M, Ishizaki K, Kono K, Shimizu-Ueda Y, Hanajiri T, Yamato KT, Fukuzawa H, Brennicke A, Ohyama K.

Proc Natl Acad Sci U S A. 2001 Jul 31;98(16):9454-9.

42.

Construction of male and female PAC genomic libraries suitable for identification of Y-chromosome-specific clones from the liverwort, Marchantia polymorpha.

Okada S, Fujisawa M, Sone T, Nakayama S, Nishiyama R, Takenaka M, Yamaoka S, Sakaida M, Kono K, Takahama M, Yamato KT, Fukuzawa H, Brennicke A, Ohyama K.

Plant J. 2000 Nov;24(3):421-8.

43.

Direct transformation and plant regeneration of the haploid liverwort Marchantia polymorpha L.

Takenaka M, Yamaoka S, Hanajiri T, Shimizu-Ueda Y, Yamato KT, Fukuzawa H, Ohyama K.

Transgenic Res. 2000 Jun;9(3):179-85.

PMID:
11032366
44.

Comparison of expressed sequence tags from male and female sexual organs of Marchantia polymorpha.

Nishiyama R, Yamato KT, Miura K, Sakaida M, Okada S, Kono K, Takahama M, Sone T, Takenaka M, Fukuzawa H, Ohyama K.

DNA Res. 2000 Jun 30;7(3):165-74.

PMID:
10907846
45.

Bryophyte 5S rDNA was inserted into 45S rDNA repeat units after the divergence from higher land plants.

Sone T, Fujisawa M, Takenaka M, Nakagawa S, Yamaoka S, Sakaida M, Nishiyama R, Yamato KT, Ohmido N, Fukui K, Fukuzawa H, Ohyama K.

Plant Mol Biol. 1999 Nov;41(5):679-85.

PMID:
10645727
46.

Expressed sequence tags from immature female sexual organ of a liverwort, Marchantia polymorpha.

Nagai J, Yamato KT, Sakaida M, Yoda H, Fukuzawa H, Ohyama K.

DNA Res. 1999 Feb 26;6(1):1-11.

PMID:
10231024

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