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Items: 1 to 50 of 154

1.

Rotational Mechanism Model of the Bacterial V1 Motor Based on Structural and Computational Analyses.

Singharoy A, Chipot C, Ekimoto T, Suzuki K, Ikeguchi M, Yamato I, Murata T.

Front Physiol. 2019 Feb 5;10:46. doi: 10.3389/fphys.2019.00046. eCollection 2019. Review.

2.

Metastable asymmetrical structure of a shaftless V1 motor.

Maruyama S, Suzuki K, Imamura M, Sasaki H, Matsunami H, Mizutani K, Saito Y, Imai FL, Ishizuka-Katsura Y, Kimura-Someya T, Shirouzu M, Uchihashi T, Ando T, Yamato I, Murata T.

Sci Adv. 2019 Jan 30;5(1):eaau8149. doi: 10.1126/sciadv.aau8149. eCollection 2019 Jan.

3.

Quantum probability in decision making from quantum information representation of neuronal states.

Khrennikov A, Basieva I, Pothos EM, Yamato I.

Sci Rep. 2018 Nov 1;8(1):16225. doi: 10.1038/s41598-018-34531-3.

4.

Regeneration of Transected Recurrent Laryngeal Nerve Using Hybrid-Transplantation of Skeletal Muscle-Derived Stem Cells and Bioabsorbable Scaffold.

Kazuno A, Maki D, Yamato I, Nakajima N, Seta H, Soeda S, Ozawa S, Uchiyama Y, Tamaki T.

J Clin Med. 2018 Sep 12;7(9). pii: E276. doi: 10.3390/jcm7090276.

5.

Voluntary Exercise Positively Affects the Recovery of Long-Nerve Gap Injury Following Tube-Bridging with Human Skeletal Muscle-Derived Stem Cell Transplantation.

Seta H, Maki D, Kazuno A, Yamato I, Nakajima N, Soeda S, Uchiyama Y, Tamaki T.

J Clin Med. 2018 Apr 2;7(4). pii: E67. doi: 10.3390/jcm7040067.

6.

Editorial.

Baladrón C, Khrennikov A, Yamato I.

Prog Biophys Mol Biol. 2017 Nov;130(Pt A):1. doi: 10.1016/j.pbiomolbio.2017.08.013. Epub 2017 Aug 26. No abstract available.

PMID:
28851518
7.

A model of differentiation in quantum bioinformatics.

Asano M, Basieva I, Khrennikov A, Yamato I.

Prog Biophys Mol Biol. 2017 Nov;130(Pt A):88-98. doi: 10.1016/j.pbiomolbio.2017.05.013. Epub 2017 Jun 1. Review.

PMID:
28579516
8.

Energy and information flows in biological systems: Bioenergy transduction of V1-ATPase rotary motor and dynamics of thermodynamic entropy in information flows.

Yamato I, Murata T, Khrennikov A.

Prog Biophys Mol Biol. 2017 Nov;130(Pt A):33-38. doi: 10.1016/j.pbiomolbio.2017.04.004. Epub 2017 Apr 17. Review.

PMID:
28427899
9.

Rotation Mechanism of Molecular Motor V1-ATPase Studied by Multiscale Molecular Dynamics Simulation.

Isaka Y, Ekimoto T, Kokabu Y, Yamato I, Murata T, Ikeguchi M.

Biophys J. 2017 Mar 14;112(5):911-920. doi: 10.1016/j.bpj.2017.01.029.

10.

[Huge Hepatocellular Carcinoma with Portal Vein and Inferior Vena Cava Thrombi Treated with Curative Liver Resection and Perioperative Hepatic Arterial Infusion Chemotherapy - A Case Report].

Obara S, Nomi T, Yamato I, Hokuto D, Yasuda S, Kawaguchi C, Yoshikawa T, Sho M, Yamada T, Akahori T, Kinoshita S, Nagai M, Kanehiro H, Nakajima Y.

Gan To Kagaku Ryoho. 2016 Nov;43(12):1779-1781. Japanese.

PMID:
28133129
11.

[A Case of Advanced Hepatocellular Carcinoma, Its Disease Progression Could Be Controlled by Multimodal Treatment].

Yoshikawa T, Nomi T, Hokuto D, Yamato I, Yasuda S, Obara S, Kawaguchi C, Kinoshita S, Nishiwada S, Nagai M, Akahori T, Yamada T, Sho M, Kanehiro H, Nakajima Y.

Gan To Kagaku Ryoho. 2016 Nov;43(12):1754-1756. Japanese.

PMID:
28133121
12.

[Long-Term Survival in a Case of Sigmoid Colon Cancer with Multiple Liver Metastases Treated with Repeated Hepatectomies].

Nakamura Y, Koyama F, Nomi T, Yamato I, Ueda T, Hokutou D, Inoue T, Yasuda S, Kawaguchi C, Obara S, Nakamoto T, Sasaki Y, Yoshikawa T, Fujii H, Nakajima Y.

Gan To Kagaku Ryoho. 2016 Nov;43(12):1736-1738. Japanese.

PMID:
28133115
13.

Intraarterial Therapy Using Micellar Nanoparticles Incorporating SN-38 in a Rabbit Liver Tumor Model.

Nishiofuku H, Tanaka T, Fukuoka Y, Sato T, Masada T, Tatsumoto S, Sho M, Yamato I, Yasuda S, Matsushima S, Takano M, Ohbayashi C, Kichikawa K.

J Vasc Interv Radiol. 2017 Mar;28(3):457-464. doi: 10.1016/j.jvir.2016.10.032. Epub 2016 Dec 29.

PMID:
28041782
14.

Operating principles of rotary molecular motors: differences between F1 and V1 motors.

Yamato I, Kakinuma Y, Murata T.

Biophys Physicobiol. 2016 Feb 27;13:37-44. eCollection 2016. Review.

15.

Pharmacokinetics and Histopathological Findings of Chemoembolization Using Cisplatin Powder Mixed with Degradable Starch Microspheres in a Rabbit Liver Tumor Model.

Sato T, Tanaka T, Nishiofuku H, Fukuoka Y, Sakaguchi H, Masada T, Tatsumoto S, Marugami N, Takano M, Yamato I, Sho M, Ohbayashi C, Hirai T, Kichikawa K.

Cardiovasc Intervent Radiol. 2017 Mar;40(3):438-444. doi: 10.1007/s00270-016-1512-1. Epub 2016 Nov 21.

PMID:
27872985
16.

Crystal structures of the ATP-binding and ADP-release dwells of the V1 rotary motor.

Suzuki K, Mizutani K, Maruyama S, Shimono K, Imai FL, Muneyuki E, Kakinuma Y, Ishizuka-Katsura Y, Shirouzu M, Yokoyama S, Yamato I, Murata T.

Nat Commun. 2016 Oct 27;7:13235. doi: 10.1038/ncomms13235.

17.

The prognosis of liver resection for patients with four or more colorectal liver metastases has not improved in the era of modern chemotherapy.

Hokuto D, Nomi T, Yamato I, Yasuda S, Obara S, Yoshikawa T, Kawaguchi C, Yamada T, Kanehiro H, Nakajima Y.

J Surg Oncol. 2016 Dec;114(8):959-965. doi: 10.1002/jso.24461. Epub 2016 Sep 28.

PMID:
27683191
18.

The Administration of Celecoxib as an Analgesic after Liver Resection Is Safe.

Hokuto D, Nomi T, Kawaguchi C, Yoshikawa T, Yasuda S, Obara S, Yamato I, Yamada T, Kanehiro H, Nakajima Y.

Dig Surg. 2017;34(2):108-113. doi: 10.1159/000449042. Epub 2016 Sep 17.

PMID:
27640209
19.

Laparoscopic resection of a hepatic mucinous cystic neoplasm: A case report.

Obara S, Nomi T, Yamato I, Hokuto D, Yasuda S, Nishiwada S, Kawaguchi C, Yoshikawa T, Yamada T, Kanehiro H, Nakajima Y.

Int J Surg Case Rep. 2016;24:18-21. doi: 10.1016/j.ijscr.2016.04.036. Epub 2016 Apr 28.

20.

Three-body system metaphor for the two-slit experiment and Escherichia coli lactose-glucose metabolism.

Asano M, Khrennikov A, Ohya M, Tanaka Y, Yamato I.

Philos Trans A Math Phys Eng Sci. 2016 May 28;374(2068). pii: 20150243. doi: 10.1098/rsta.2015.0243.

21.

Binding interactions of the peripheral stalk subunit isoforms from human V-ATPase.

Rahman S, Yamato I, Saijo S, Mizutani K, Takamuku Y, Ishizuka-Katsura Y, Ohsawa N, Terada T, Shirouzu M, Yokoyama S, Murata T.

Biosci Biotechnol Biochem. 2016 May;80(5):878-90. doi: 10.1080/09168451.2015.1135043. Epub 2016 Feb 10.

PMID:
26865189
22.

Impact of Mechanical Bowel Preparation on Postoperative Outcomes after Liver Resection for Patients with Hepatocellular Carcinoma: A Single-Center Retrospective Cohort Study.

Hokuto D, Nomi T, Yamato I, Yasuda S, Obara S, Nakajima Y.

Dig Surg. 2016;33(1):51-7. doi: 10.1159/000441394. Epub 2015 Nov 21.

PMID:
26587899
23.

Huge hepatocellular carcinoma with multiple intrahepatic metastases: An aggressive multimodal treatment.

Yasuda S, Nomi T, Hokuto D, Yamato I, Obara S, Yamada T, Kanehiro H, Nakajima Y.

Int J Surg Case Rep. 2015;16:44-7. doi: 10.1016/j.ijscr.2015.09.016. Epub 2015 Sep 18.

24.

Hepatic artery injury during left hepatic trisectionectomy for colorectal liver metastasis treated by portal vein arterialization.

Hokuto D, Nomi T, Yamato I, Yasuda S, Obara S, Yamada T, Kanehiro H, Nakajima Y.

Int J Surg Case Rep. 2015;13:119-24. doi: 10.1016/j.ijscr.2015.07.004. Epub 2015 Jul 9.

25.

Clinical significance and therapeutic potential of prostate cancer antigen-1/ALKBH3 in human renal cell carcinoma.

Hotta K, Sho M, Fujimoto K, Shimada K, Yamato I, Anai S, Harada H, Tsujikawa K, Konishi N, Shinohara N, Nakajima Y.

Oncol Rep. 2015 Aug;34(2):648-54. doi: 10.3892/or.2015.4017. Epub 2015 May 29.

PMID:
26035443
26.

Nectin-4 expression contributes to tumor proliferation, angiogenesis and patient prognosis in human pancreatic cancer.

Nishiwada S, Sho M, Yasuda S, Shimada K, Yamato I, Akahori T, Kinoshita S, Nagai M, Konishi N, Nakajima Y.

J Exp Clin Cancer Res. 2015 Mar 28;34:30. doi: 10.1186/s13046-015-0144-7.

27.

Clinical significance of CD155 expression in human pancreatic cancer.

Nishiwada S, Sho M, Yasuda S, Shimada K, Yamato I, Akahori T, Kinoshita S, Nagai M, Konishi N, Nakajima Y.

Anticancer Res. 2015 Apr;35(4):2287-97. Erratum in: Anticancer Res. 2015 Jul;35(7):4371.

PMID:
25862891
28.

Clinical impact of herpesvirus entry mediator expression in human hepatocellular carcinoma.

Hokuto D, Sho M, Yamato I, Yasuda S, Obara S, Nomi T, Nakajima Y.

Eur J Cancer. 2015 Jan;51(2):157-65. doi: 10.1016/j.ejca.2014.11.004. Epub 2014 Nov 25.

PMID:
25468715
29.

Torque generation of Enterococcus hirae V-ATPase.

Ueno H, Minagawa Y, Hara M, Rahman S, Yamato I, Muneyuki E, Noji H, Murata T, Iino R.

J Biol Chem. 2014 Nov 7;289(45):31212-23. doi: 10.1074/jbc.M114.598177. Epub 2014 Sep 25.

30.

Eosinophilic cholangitis coexisted with idiopathic thrombocytopenic purpura: Report of a case.

Hokuto D, Yamato I, Nomi T, Yasuda S, Obara S, Yamada T, Chihiro K, Nakajima Y.

Hepatol Res. 2015 May;45(5):595-600. doi: 10.1111/hepr.12380. Epub 2014 Jul 24.

PMID:
24976135
31.

A model of epigenetic evolution based on theory of open quantum systems.

Asano M, Basieva I, Khrennikov A, Ohya M, Tanaka Y, Yamato I.

Syst Synth Biol. 2013 Dec;7(4):161-73. doi: 10.1007/s11693-013-9109-3. Epub 2013 Jun 18.

32.

Mutant LV(476-7)AA of A-subunit of Enterococcus hirae V1-ATPase: High affinity of A3B3 complex to DF axis and low ATPase activity.

Alam J, Yamato I, Arai S, Saijo S, Mizutani K, Ishizuka-Katsura Y, Ohsawa N, Terada T, Shirouzu M, Yokoyama S, Iwata S, Kakinuma Y, Murata T.

Springerplus. 2013 Dec 27;2:689. doi: 10.1186/2193-1801-2-689. eCollection 2013.

33.

Significant involvement of herpesvirus entry mediator in human esophageal squamous cell carcinoma.

Migita K, Sho M, Shimada K, Yasuda S, Yamato I, Takayama T, Matsumoto S, Wakatsuki K, Hotta K, Tanaka T, Ito M, Konishi N, Nakajima Y.

Cancer. 2014 Mar 15;120(6):808-17. doi: 10.1002/cncr.28491. Epub 2013 Nov 18.

34.

Basic properties of rotary dynamics of the molecular motor Enterococcus hirae V1-ATPase.

Minagawa Y, Ueno H, Hara M, Ishizuka-Katsura Y, Ohsawa N, Terada T, Shirouzu M, Yokoyama S, Yamato I, Muneyuki E, Noji H, Murata T, Iino R.

J Biol Chem. 2013 Nov 8;288(45):32700-7. doi: 10.1074/jbc.M113.506329. Epub 2013 Oct 2.

35.

Loose binding of the DF axis with the A3B3 complex stimulates the initial activity of Enterococcus hirae V1-ATPase.

Alam MJ, Arai S, Saijo S, Suzuki K, Mizutani K, Ishizuka-Katsura Y, Ohsawa N, Terada T, Shirouzu M, Yokoyama S, Iwata S, Kakinuma Y, Yamato I, Murata T.

PLoS One. 2013 Sep 13;8(9):e74291. doi: 10.1371/journal.pone.0074291. eCollection 2013.

36.

Quantum-like model for the adaptive dynamics of the genetic regulation of E. coli's metabolism of glucose/lactose.

Asano M, Basieva I, Khrennikov A, Ohya M, Tanaka Y, Yamato I.

Syst Synth Biol. 2012 Jun;6(1-2):1-7. doi: 10.1007/s11693-012-9091-1. Epub 2012 Apr 11.

37.

Simultaneous blockade of programmed death 1 and vascular endothelial growth factor receptor 2 (VEGFR2) induces synergistic anti-tumour effect in vivo.

Yasuda S, Sho M, Yamato I, Yoshiji H, Wakatsuki K, Nishiwada S, Yagita H, Nakajima Y.

Clin Exp Immunol. 2013 Jun;172(3):500-6. doi: 10.1111/cei.12069.

38.

Clinical impact of tumor-infiltrating CD45RO⁺ memory T cells on human gastric cancer.

Wakatsuki K, Sho M, Yamato I, Takayama T, Matsumoto S, Tanaka T, Migita K, Ito M, Hotta K, Nakajima Y.

Oncol Rep. 2013 May;29(5):1756-62. doi: 10.3892/or.2013.2302. Epub 2013 Feb 22.

PMID:
23440298
39.

Biochemical and biophysical properties of interactions between subunits of the peripheral stalk region of human V-ATPase.

Rahman S, Yamato I, Saijo S, Mizutani K, Ishizuka-Katsura Y, Ohsawa N, Terada T, Shirouzu M, Yokoyama S, Iwata S, Murata T.

PLoS One. 2013;8(2):e55704. doi: 10.1371/journal.pone.0055704. Epub 2013 Feb 11.

40.

Rotation mechanism of Enterococcus hirae V1-ATPase based on asymmetric crystal structures.

Arai S, Saijo S, Suzuki K, Mizutani K, Kakinuma Y, Ishizuka-Katsura Y, Ohsawa N, Terada T, Shirouzu M, Yokoyama S, Iwata S, Yamato I, Murata T.

Nature. 2013 Jan 31;493(7434):703-7. doi: 10.1038/nature11778. Epub 2013 Jan 13.

PMID:
23334411
41.

[Resection of the remnant pancreas for recurrent pancreatic cancer after distal pancreatectomy-a case report].

Kinoshita S, Sho M, Akahori T, Nomi T, Yamato I, Hokutoh D, Yasuda S, Nakajima Y.

Gan To Kagaku Ryoho. 2012 Nov;39(12):1883-5. Japanese.

PMID:
23267918
42.

Quantum-like model of diauxie in Escherichia coli: operational description of precultivation effect.

Asano M, Basieva I, Khrennikov A, Ohya M, Tanaka Y, Yamato I.

J Theor Biol. 2012 Dec 7;314:130-7. doi: 10.1016/j.jtbi.2012.08.022. Epub 2012 Sep 12.

PMID:
22982333
43.

Postoperative outcomes of patients with hepatocellular carcinoma negative for all virus-related markers.

Yamato I, Takayama T, Midorikawa Y, Higaki T, Nakayama H, Moriguchi M, Nakajima Y, Matsuoka S, Ogawa M, Moriyama M.

Surg Today. 2013 Aug;43(8):865-70. doi: 10.1007/s00595-012-0308-4. Epub 2012 Aug 28.

PMID:
22926553
44.

PCA-1/ALKBH3 contributes to pancreatic cancer by supporting apoptotic resistance and angiogenesis.

Yamato I, Sho M, Shimada K, Hotta K, Ueda Y, Yasuda S, Shigi N, Konishi N, Tsujikawa K, Nakajima Y.

Cancer Res. 2012 Sep 15;72(18):4829-39. doi: 10.1158/0008-5472.CAN-12-0328. Epub 2012 Jul 23.

45.

Pathological and clinical impact of neoadjuvant chemoradiotherapy using full-dose gemcitabine and concurrent radiation for resectable pancreatic cancer.

Sho M, Akahori T, Tanaka T, Kinoshita S, Tamamoto T, Nomi T, Yamato I, Hokuto D, Yasuda S, Kawaguchi C, Nishiofuku H, Marugami N, Enomonoto Y, Kasai T, Hasegawa M, Kichikawa K, Nakajima Y.

J Hepatobiliary Pancreat Sci. 2013 Feb;20(2):197-205. doi: 10.1007/s00534-012-0532-8.

PMID:
22766692
46.

Mutagenesis of the residues forming an ion binding pocket of the NtpK subunit of Enterococcus hirae V-ATPase.

Kawano-Kawada M, Iwaki T, Hosaka T, Murata T, Yamato I, Homma M, Kakinuma Y.

J Bacteriol. 2012 Sep;194(17):4546-9. doi: 10.1128/JB.00714-12. Epub 2012 Jun 22.

47.

Quantum-like interference effect in gene expression: glucose-lactose destructive interference.

Basieva I, Khrennikov A, Ohya M, Yamato I.

Syst Synth Biol. 2011 Jun;5(1-2):59-68. doi: 10.1007/s11693-011-9081-8. Epub 2011 Mar 20.

48.

Calculating the Na⁺ translocating V-ATPase catalytic site affinity for substrate binding by homology modeled NtpA monomer using molecular dynamics/free energy calculation.

Muhammed Z, Arai S, Saijo S, Yamato I, Murata T, Suenaga A.

J Mol Graph Model. 2012 Jul;37:59-66. doi: 10.1016/j.jmgm.2012.03.006. Epub 2012 Mar 30.

PMID:
22622011
49.

Potent inhibition of dinuclear zinc(II) peptidase, an aminopeptidase from Aeromonas proteolytica, by 8-quinolinol derivatives: inhibitor design based on Zn2+ fluorophores, kinetic, and X-ray crystallographic study.

Hanaya K, Suetsugu M, Saijo S, Yamato I, Aoki S.

J Biol Inorg Chem. 2012 Apr;17(4):517-29. doi: 10.1007/s00775-012-0873-4. Epub 2012 Feb 5.

PMID:
22311113
50.

Crystal structure of the central axis DF complex of the prokaryotic V-ATPase.

Saijo S, Arai S, Hossain KM, Yamato I, Suzuki K, Kakinuma Y, Ishizuka-Katsura Y, Ohsawa N, Terada T, Shirouzu M, Yokoyama S, Iwata S, Murata T.

Proc Natl Acad Sci U S A. 2011 Dec 13;108(50):19955-60. doi: 10.1073/pnas.1108810108. Epub 2011 Nov 23.

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