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Items: 1 to 50 of 143

1.

Rapid sequencing-based diagnosis of infectious bacterial species from meningitis patients in Zambia.

Nakagawa S, Inoue S, Kryukov K, Yamagishi J, Ohno A, Hayashida K, Nakazwe R, Kalumbi M, Mwenya D, Asami N, Sugimoto C, Mutengo MM, Imanishi T.

Clin Transl Immunology. 2019 Nov 5;8(11):e01087. doi: 10.1002/cti2.1087. eCollection 2019.

PMID:
31709051
2.

Complete Genome Sequence of Rickettsia asiatica Strain Maytaro1284, a Member of Spotted Fever Group Rickettsiae Isolated from an Ixodes ovatus Tick in Japan.

Thu MJ, Qiu Y, Yamagishi J, Kusakisako K, Ogata S, Moustafa MAM, Isoda N, Sugimoto C, Katakura K, Nonaka N, Nakao R.

Microbiol Resour Announc. 2019 Sep 12;8(37). pii: e00886-19. doi: 10.1128/MRA.00886-19.

3.

Transcriptome analysis of the effect of C-C chemokine receptor 5 deficiency on cell response to Toxoplasma gondii in brain cells.

Kobayashi K, Umeda K, Ihara F, Tanaka S, Yamagishi J, Suzuki Y, Nishikawa Y.

BMC Genomics. 2019 Sep 11;20(1):705. doi: 10.1186/s12864-019-6076-4.

4.

Bayesian reconstruction of a vancomycin-resistant Enterococcus transmission route using epidemiologic data and genomic variants from whole genome sequencing.

Fujikura Y, Hamamoto T, Kanayama A, Kaku K, Yamagishi J, Kawana A.

J Hosp Infect. 2019 Aug 16. pii: S0195-6701(19)30323-8. doi: 10.1016/j.jhin.2019.08.011. [Epub ahead of print]

5.

Transitions in morphological forms and rapid development of the asexual schizonts of Eimeria tenella through serial passaging in chicks.

Matsubayashi M, Yamaguchi H, Hatta T, Kawahara F, Hatabu T, Iseki H, Yamagishi J, Isobe T, Teramoto I, Kaneko A, Kita K, Tsuji N, Sasai K.

Infect Genet Evol. 2019 Nov;75:103993. doi: 10.1016/j.meegid.2019.103993. Epub 2019 Aug 5.

PMID:
31394291
6.

Genetic diversity and population structure of Glossina morsitans morsitans in the active foci of human African trypanosomiasis in Zambia and Malawi.

Nakamura Y, Yamagishi J, Hayashida K, Osada N, Chatanga E, Mweempwa C, Chilongo K, Chisi J, Musaya J, Inoue N, Namangala B, Sugimoto C.

PLoS Negl Trop Dis. 2019 Jul 25;13(7):e0007568. doi: 10.1371/journal.pntd.0007568. eCollection 2019 Jul.

7.

Initiated Babesia ovata Sexual Stages under In Vitro Conditions Were Recognized by Anti-CCp2 Antibodies, Showing Changes in the DNA Content by Imaging Flow Cytometry.

Nguyen TT, Dang-Trinh MA, Higuchi L, Mosqueda J, Hakimi H, Asada M, Yamagishi J, Umemiya-Shirafuji R, Kawazu SI.

Pathogens. 2019 Jul 17;8(3). pii: E104. doi: 10.3390/pathogens8030104.

8.

Prevalence of hemoprotozoan parasites in small ruminants along a human-livestock-wildlife interface in western Uganda.

Kasozi KI, Namayanja M, Gaithuma AK, Mahero M, Matovu E, Yamagishi J, Sugimoto C, MacLeod E.

Vet Parasitol Reg Stud Reports. 2019 Aug;17:100309. doi: 10.1016/j.vprsr.2019.100309. Epub 2019 May 31.

PMID:
31303220
9.

Field diagnosis and genotyping of chikungunya virus using a dried reverse transcription loop-mediated isothermal amplification (LAMP) assay and MinION sequencing.

Hayashida K, Orba Y, Sequeira PC, Sugimoto C, Hall WW, Eshita Y, Suzuki Y, Runtuwene L, Brasil P, Calvet G, Rodrigues CDS, Santos CCD, Mares-Guia MAM, Yamagishi J, Filippis AMB, Sawa H.

PLoS Negl Trop Dis. 2019 Jun 3;13(6):e0007480. doi: 10.1371/journal.pntd.0007480. eCollection 2019 Jun.

10.

Characterisation of a rice vacuolar invertase isoform, OsINV2, for growth and yield-related traits.

Morey SR, Hirose T, Hashida Y, Miyao A, Hirochika H, Ohsugi R, Yamagishi J, Aoki N.

Funct Plant Biol. 2019 May 2. doi: 10.1071/FP18291. [Epub ahead of print]

PMID:
31043226
11.

Consensus and variations in cell line specificity among human metapneumovirus strains.

Nao N, Sato K, Yamagishi J, Tahara M, Nakatsu Y, Seki F, Katoh H, Ohnuma A, Shirogane Y, Hayashi M, Suzuki T, Kikuta H, Nishimura H, Takeda M.

PLoS One. 2019 Apr 23;14(4):e0215822. doi: 10.1371/journal.pone.0215822. eCollection 2019.

12.

Molecular detection of Rickettsia felis in dogs, rodents and cat fleas in Zambia.

Moonga LC, Hayashida K, Nakao R, Lisulo M, Kaneko C, Nakamura I, Eshita Y, Mweene AS, Namangala B, Sugimoto C, Yamagishi J.

Parasit Vectors. 2019 Apr 11;12(1):168. doi: 10.1186/s13071-019-3435-6.

13.

Identification of Mouse and Human Antibody Repertoires by Next-Generation Sequencing.

Sun L, Kono N, Toh H, Xue H, Sano K, Suzuki T, Ainai A, Orba Y, Yamagishi J, Hasegawa H, Takahashi Y, Itamura S, Ohnishi K.

J Vis Exp. 2019 Mar 15;(145). doi: 10.3791/58804.

PMID:
30933062
14.

Environmental Compensation Effect and Synergistic Mechanism of Optimized Nitrogen Management Increasing Nitrogen Use Efficiency in Indica Hybrid Rice.

Zhou W, Yang Z, Wang T, Fu Y, Chen Y, Hu B, Yamagishi J, Ren W.

Front Plant Sci. 2019 Mar 4;10:245. doi: 10.3389/fpls.2019.00245. eCollection 2019.

15.

Draft Genome Sequence of Trypanosoma equiperdum Strain IVM-t1.

Davaasuren B, Yamagishi J, Mizushima D, Narantsatsral S, Otgonsuren D, Myagmarsuren P, Battsetseg B, Battur B, Inoue N, Suganuma K.

Microbiol Resour Announc. 2019 Feb 28;8(9). pii: e01119-18. doi: 10.1128/MRA.01119-18. eCollection 2019 Feb.

16.

A single test approach for accurate and sensitive detection and taxonomic characterization of Trypanosomes by comprehensive analysis of internal transcribed spacer 1 amplicons.

Gaithuma AK, Yamagishi J, Martinelli A, Hayashida K, Kawai N, Marsela M, Sugimoto C.

PLoS Negl Trop Dis. 2019 Feb 25;13(2):e0006842. doi: 10.1371/journal.pntd.0006842. eCollection 2019 Feb.

17.

East/Central/South African Genotype in a Chikungunya Outbreak, Dhaka, Bangladesh, 2017.

Rahman M, Yamagishi J, Rahim R, Hasan A, Sobhan A.

Emerg Infect Dis. 2019 Feb;25(2):370-372. doi: 10.3201/eid2502.180188.

18.

Novel Characteristics of Mitochondrial Electron Transport Chain from Eimeria tenella.

Matsubayashi M, Inaoka DK, Komatsuya K, Hatta T, Kawahara F, Sakamoto K, Hikosaka K, Yamagishi J, Sasai K, Shiba T, Harada S, Tsuji N, Kita K.

Genes (Basel). 2019 Jan 8;10(1). pii: E29. doi: 10.3390/genes10010029.

19.

Development and validation of direct dry loop mediated isothermal amplification for diagnosis of Trypanosoma evansi.

Salim B, Hayashida K, Mossaad E, Nakao R, Yamagishi J, Sugimoto C.

Vet Parasitol. 2018 Aug 30;260:53-57. doi: 10.1016/j.vetpar.2018.08.009. Epub 2018 Aug 23.

20.

Establishment of a mouse-tick infection model for Theileria orientalis and analysis of its transcriptome.

Hayashida K, Umemiya-Shirafuji R, Sivakumar T, Yamagishi J, Suzuki Y, Sugimoto C, Yokoyama N.

Int J Parasitol. 2018 Oct;48(12):915-924. doi: 10.1016/j.ijpara.2018.05.012. Epub 2018 Aug 31.

PMID:
30176237
21.

Genetic Analysis of Babesia Isolates from Cattle with Clinical Babesiosis in Sri Lanka.

Sivakumar T, Tuvshintulga B, Zhyldyz A, Kothalawala H, Yapa PR, Kanagaratnam R, Vimalakumar SC, Abeysekera TS, Weerasingha AS, Yamagishi J, Igarashi I, Silva SSP, Yokoyama N.

J Clin Microbiol. 2018 Oct 25;56(11). pii: e00895-18. doi: 10.1128/JCM.00895-18. Print 2018 Nov.

22.

Corrigendum: Interactive transcriptome analysis of malaria patients and infecting Plasmodium falciparum.

Yamagishi J, Natori A, Tolba MEM, Mongan AE, Sugimoto C, Katayama T, Kawashima S, Makalowski W, Maeda R, Eshita Y, Tuda J, Suzuki Y.

Genome Res. 2018 Aug;28(8):1253. doi: 10.1101/gr.240291.118. No abstract available.

23.

Nanopore sequencing of drug-resistance-associated genes in malaria parasites, Plasmodium falciparum.

Runtuwene LR, Tuda JSB, Mongan AE, Makalowski W, Frith MC, Imwong M, Srisutham S, Nguyen Thi LA, Tuan NN, Eshita Y, Maeda R, Yamagishi J, Suzuki Y.

Sci Rep. 2018 May 29;8(1):8286. doi: 10.1038/s41598-018-26334-3.

24.

An innovative diagnostic technology for the codon mutation C580Y in kelch13 of Plasmodium falciparum with MinION nanopore sequencer.

Imai K, Tarumoto N, Runtuwene LR, Sakai J, Hayashida K, Eshita Y, Maeda R, Tuda J, Ohno H, Murakami T, Maesaki S, Suzuki Y, Yamagishi J, Maeda T.

Malar J. 2018 May 29;17(1):217. doi: 10.1186/s12936-018-2362-x.

25.

Targeting of RNA Polymerase II by a nuclear Legionella pneumophila Dot/Icm effector SnpL.

Schuelein R, Spencer H, Dagley LF, Li PF, Luo L, Stow JL, Abraham G, Naderer T, Gomez-Valero L, Buchrieser C, Sugimoto C, Yamagishi J, Webb AI, Pasricha S, Hartland EL.

Cell Microbiol. 2018 Sep;20(9):e12852. doi: 10.1111/cmi.12852. Epub 2018 May 18.

PMID:
29691989
26.

Establishment of a stable transfection system for genetic manipulation of Babesia gibsoni.

Liu M, Adjou Moumouni PF, Asada M, Hakimi H, Masatani T, Vudriko P, Lee SH, Kawazu SI, Yamagishi J, Xuan X.

Parasit Vectors. 2018 Apr 23;11(1):260. doi: 10.1186/s13071-018-2853-1.

27.

Genetic Evidence for the Role of a Rice Vacuolar Invertase as a Molecular Sink Strength Determinant.

Morey SR, Hirose T, Hashida Y, Miyao A, Hirochika H, Ohsugi R, Yamagishi J, Aoki N.

Rice (N Y). 2018 Jan 17;11(1):6. doi: 10.1186/s12284-018-0201-x.

28.

Comparative genomics and proteomic analyses between lethal and nonlethal strains of Plasmodium berghei.

Niikura M, Inoue SI, Fukutomi T, Yamagishi J, Asahi H, Kobayashi F.

Exp Parasitol. 2018 Feb;185:1-9. doi: 10.1016/j.exppara.2018.01.001. Epub 2018 Jan 4.

PMID:
29307564
29.

Identification and characterization of interchangeable cross-species functional promoters between Babesia gibsoni and Babesia bovis.

Liu M, Adjou Moumouni PF, Cao S, Asada M, Wang G, Gao Y, Guo H, Li J, Vudriko P, Efstratiou A, Ringo AE, Lee SH, Hakimi H, Masatani T, Sunaga F, Kawazu SI, Yamagishi J, Jia L, Inoue N, Xuan X.

Ticks Tick Borne Dis. 2018 Feb;9(2):330-333. doi: 10.1016/j.ttbdis.2017.11.008. Epub 2017 Nov 21.

PMID:
29174364
30.

Transcriptional profiling of Toll-like receptor 2-deficient primary murine brain cells during Toxoplasma gondii infection.

Umeda K, Tanaka S, Ihara F, Yamagishi J, Suzuki Y, Nishikawa Y.

PLoS One. 2017 Nov 14;12(11):e0187703. doi: 10.1371/journal.pone.0187703. eCollection 2017.

31.

Whole-genome assembly of Babesia ovata and comparative genomics between closely related pathogens.

Yamagishi J, Asada M, Hakimi H, Tanaka TQ, Sugimoto C, Kawazu SI.

BMC Genomics. 2017 Oct 27;18(1):832. doi: 10.1186/s12864-017-4230-4.

32.

A novel diagnostic method for malaria using loop-mediated isothermal amplification (LAMP) and MinION™ nanopore sequencer.

Imai K, Tarumoto N, Misawa K, Runtuwene LR, Sakai J, Hayashida K, Eshita Y, Maeda R, Tuda J, Murakami T, Maesaki S, Suzuki Y, Yamagishi J, Maeda T.

BMC Infect Dis. 2017 Sep 13;17(1):621. doi: 10.1186/s12879-017-2718-9.

33.

Transient transfection of intraerythrocytic Babesia gibsoni using elongation factor-1 alpha promoter.

Liu M, Asada M, Cao S, Adjou Moumouni PF, Vudriko P, Efstratiou A, Hakimi H, Masatani T, Sunaga F, Kawazu SI, Yamagishi J, Xuan X.

Mol Biochem Parasitol. 2017 Sep;216:56-59. doi: 10.1016/j.molbiopara.2017.07.003. Epub 2017 Jul 17.

PMID:
28729071
34.

Serotyping dengue virus with isothermal amplification and a portable sequencer.

Yamagishi J, Runtuwene LR, Hayashida K, Mongan AE, Thi LAN, Thuy LN, Nhat CN, Limkittikul K, Sirivichayakul C, Sathirapongsasuti N, Frith M, Makalowski W, Eshita Y, Sugano S, Suzuki Y.

Sci Rep. 2017 Jun 14;7(1):3510. doi: 10.1038/s41598-017-03734-5.

35.

A TLR3-Specific Adjuvant Relieves Innate Resistance to PD-L1 Blockade without Cytokine Toxicity in Tumor Vaccine Immunotherapy.

Takeda Y, Kataoka K, Yamagishi J, Ogawa S, Seya T, Matsumoto M.

Cell Rep. 2017 May 30;19(9):1874-1887. doi: 10.1016/j.celrep.2017.05.015.

36.

PEGylation of a TLR2-agonist-based vaccine delivery system improves antigen trafficking and the magnitude of ensuing antibody and CD8+ T cell responses.

Sekiya T, Yamagishi J, Gray JHV, Whitney PG, Martinelli A, Zeng W, Wong CY, Sugimoto C, Jackson DC, Chua BY.

Biomaterials. 2017 Aug;137:61-72. doi: 10.1016/j.biomaterials.2017.05.018. Epub 2017 May 11.

PMID:
28544973
37.

Catalytic Decomposition of NO by Cationic Platinum Oxide Cluster Pt3O4.

Yamagishi J, Miyajima K, Kudoh S, Mafuné F.

J Phys Chem Lett. 2017 May 18;8(10):2143-2147. doi: 10.1021/acs.jpclett.7b00591. Epub 2017 Apr 28.

PMID:
28445054
38.

Use of the Oxford Nanopore MinION sequencer for MLST genotyping of vancomycin-resistant enterococci.

Tarumoto N, Sakai J, Sujino K, Yamaguchi T, Ohta M, Yamagishi J, Runtuwene LR, Murakami T, Suzuki Y, Maeda T, Maesaki S.

J Hosp Infect. 2017 Jul;96(3):296-298. doi: 10.1016/j.jhin.2017.02.020. Epub 2017 Feb 24. No abstract available.

PMID:
28389092
39.

Genetic polymorphisms in Plasmodium falciparum chloroquine resistance genes, pfcrt and pfmdr1, in North Sulawesi, Indonesia.

Reteng P, Vrisca V, Sukarno I, Djarkoni IH, Kalangi JA, Jacobs GE, Runtuwene LR, Eshita Y, Maeda R, Suzuki Y, Mongan AE, Warouw SM, Yamagishi J, Tuda J.

BMC Res Notes. 2017 Apr 4;10(1):147. doi: 10.1186/s13104-017-2468-1.

40.

Genetic Predisposition To Acquire a Polybasic Cleavage Site for Highly Pathogenic Avian Influenza Virus Hemagglutinin.

Nao N, Yamagishi J, Miyamoto H, Igarashi M, Manzoor R, Ohnuma A, Tsuda Y, Furuyama W, Shigeno A, Kajihara M, Kishida N, Yoshida R, Takada A.

MBio. 2017 Feb 14;8(1). pii: e02298-16. doi: 10.1128/mBio.02298-16.

41.

Symbiotic Cell Differentiation and Cooperative Growth in Multicellular Aggregates.

Yamagishi JF, Saito N, Kaneko K.

PLoS Comput Biol. 2016 Oct 17;12(10):e1005042. doi: 10.1371/journal.pcbi.1005042. eCollection 2016 Oct.

42.

A pre-metazoan origin of the CRK gene family and co-opted signaling network.

Shigeno-Nakazawa Y, Kasai T, Ki S, Kostyanovskaya E, Pawlak J, Yamagishi J, Okimoto N, Taiji M, Okada M, Westbrook J, Satta Y, Kigawa T, Imamoto A.

Sci Rep. 2016 Sep 30;6:34349. doi: 10.1038/srep34349.

43.

Characterization of an epimastigote-stage-specific hemoglobin receptor of Trypanosoma congolense.

Yamasaki S, Suganuma K, Yamagishi J, Asada M, Yokoyama N, Kawazu S, Inoue N.

Parasit Vectors. 2016 May 23;9(1):299. doi: 10.1186/s13071-016-1563-9.

44.

Mycophenolic Acid and Its Derivatives as Potential Chemotherapeutic Agents Targeting Inosine Monophosphate Dehydrogenase in Trypanosoma congolense.

Suganuma K, Sarwono AE, Mitsuhashi S, Jąkalski M, Okada T, Nthatisi M, Yamagishi J, Ubukata M, Inoue N.

Antimicrob Agents Chemother. 2016 Jun 20;60(7):4391-3. doi: 10.1128/AAC.02816-15. Print 2016 Jul.

45.

Comparison of Boiling and Robotics Automation Method in DNA Extraction for Metagenomic Sequencing of Human Oral Microbes.

Yamagishi J, Sato Y, Shinozaki N, Ye B, Tsuboi A, Nagasaki M, Yamashita R.

PLoS One. 2016 Apr 22;11(4):e0154389. doi: 10.1371/journal.pone.0154389. eCollection 2016.

46.

Identification and functional analysis of a novel mitochondria-localized 2-Cys peroxiredoxin, BbTPx-2, from Babesia bovis.

Masatani T, Asada M, Hakimi H, Hayashi K, Yamagishi J, Kawazu S, Xuan X.

Parasitol Res. 2016 Aug;115(8):3139-45. doi: 10.1007/s00436-016-5071-9. Epub 2016 Apr 19.

PMID:
27095567
47.

Establishment of transient and stable transfection systems for Babesia ovata.

Hakimi H, Yamagishi J, Kegawa Y, Kaneko O, Kawazu S, Asada M.

Parasit Vectors. 2016 Mar 23;9:171. doi: 10.1186/s13071-016-1439-z.

48.

Transcriptional profiles of virulent and precocious strains of Eimeria tenella at sporozoite stage; novel biological insight into attenuated asexual development.

Matsubayashi M, Kawahara F, Hatta T, Yamagishi J, Miyoshi T, Anisuzzaman, Sasai K, Isobe T, Kita K, Tsuji N.

Infect Genet Evol. 2016 Jun;40:54-62. doi: 10.1016/j.meegid.2016.02.021. Epub 2016 Feb 23.

PMID:
26917363
49.

Characterization of Toxoplasma gondii glyoxalase 1 and evaluation of inhibitory effects of curcumin on the enzyme and parasite cultures.

Goo YK, Yamagishi J, Ueno A, Terkawi MA, Aboge GO, Kwak D, Hong Y, Chung DI, Igarashi M, Nishikawa Y, Xuan X.

Parasit Vectors. 2015 Dec 23;8:654. doi: 10.1186/s13071-015-1268-5.

50.

Inter-Individual Differences in the Oral Bacteriome Are Greater than Intra-Day Fluctuations in Individuals.

Sato Y, Yamagishi J, Yamashita R, Shinozaki N, Ye B, Yamada T, Yamamoto M, Nagasaki M, Tsuboi A.

PLoS One. 2015 Jun 29;10(6):e0131607. doi: 10.1371/journal.pone.0131607. eCollection 2015.

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