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Items: 1 to 50 of 345

1.

Crystal structure of (S)-3-O-geranylgeranylglyceryl phosphate synthase from Thermoplasma acidophilum in complex with the substrate sn-glycerol 1-phosphate.

Nemoto N, Miyazono KI, Tanokura M, Yamagishi A.

Acta Crystallogr F Struct Biol Commun. 2019 Jul 1;75(Pt 7):470-479. doi: 10.1107/S2053230X19007453. Epub 2019 Jun 17.

PMID:
31282866
2.

Establishment of mesophilic-like catalytic properties in a thermophilic enzyme without affecting its thermal stability.

Akanuma S, Bessho M, Kimura H, Furukawa R, Yokobori SI, Yamagishi A.

Sci Rep. 2019 Jun 27;9(1):9346. doi: 10.1038/s41598-019-45560-x.

3.
4.

Proteomic and Metabolomic Profiling of Deinococcus radiodurans Recovering After Exposure to Simulated Low Earth Orbit Vacuum Conditions.

Ott E, Kawaguchi Y, Özgen N, Yamagishi A, Rabbow E, Rettberg P, Weckwerth W, Milojevic T.

Front Microbiol. 2019 Apr 29;10:909. doi: 10.3389/fmicb.2019.00909. eCollection 2019.

5.

Oxytocin administration modulates rats' helping behavior depending on social context.

Yamagishi A, Okada M, Masuda M, Sato N.

Neurosci Res. 2019 Apr 3. pii: S0168-0102(19)30017-3. doi: 10.1016/j.neures.2019.04.001. [Epub ahead of print]

PMID:
30953682
6.

Expression of total and phospho 4EBP1 in metastatic and non-metastatic renal cell carcinoma.

Naito S, Ichiyanagi O, Ito H, Kabasawa T, Kanno H, Narisawa T, Fukuhara H, Yagi M, Kurota Y, Yamagishi A, Sakurai T, Nishida H, Kawazoe H, Yamanobe T, Kato T, Makhov P, Kolenko VM, Yamakawa M, Tsuchiya N.

Oncol Lett. 2019 Apr;17(4):3910-3918. doi: 10.3892/ol.2019.10033. Epub 2019 Feb 12.

7.

Inhibitors of the VEGF Receptor Suppress HeLa S3 Cell Proliferation via Misalignment of Chromosomes and Rotation of the Mitotic Spindle, Causing a Delay in M-Phase Progression.

Okumura D, Hagino M, Yamagishi A, Kaibori Y, Munira S, Saito Y, Nakayama Y.

Int J Mol Sci. 2018 Dec 12;19(12). pii: E4014. doi: 10.3390/ijms19124014.

8.
9.

Environmental Data and Survival Data of Deinococcus aetherius from the Exposure Facility of the Japan Experimental Module of the International Space Station Obtained by the Tanpopo Mission.

Yamagishi A, Kawaguchi Y, Hashimoto H, Yano H, Imai E, Kodaira S, Uchihori Y, Nakagawa K.

Astrobiology. 2018 Nov;18(11):1369-1374. doi: 10.1089/ast.2017.1751. Epub 2018 Oct 5.

PMID:
30289276
10.

Stereoselective interactions as manifested by vibrational circular dichroism spectra: the interplay between chiral metal complexes co-adsorbed in a montmorillonite clay.

Sato H, Takimoto K, Mori H, Yamagishi A.

Phys Chem Chem Phys. 2018 Oct 10;20(39):25421-25427. doi: 10.1039/c8cp04753g.

PMID:
30272071
11.

A genome editing vector that enables easy selection and identification of knockout cells.

Nagasaki A, Kato Y, Meguro K, Yamagishi A, Nakamura C, Uyeda TQP.

Plasmid. 2018 Jun;98:37-44. doi: 10.1016/j.plasmid.2018.08.005. Epub 2018 Sep 6.

PMID:
30196057
12.

Selection and Characterization of DNA Aptamers Against FokI Nuclease Domain.

Nishio M, Yamagishi A, Tsukakoshi K, Kato Y, Nakamura C, Ikebukuro K.

Methods Mol Biol. 2018;1867:165-174. doi: 10.1007/978-1-4939-8799-3_12.

PMID:
30155822
13.

The Case of IgG4-Related Ophthalmic Disease with Perivascular Lesions of Superior Ophthalmic Vein Associated with Optic Nerve Disturbance.

Yamagishi A, Oshitari T, Tawada A, Baba T, Yamamoto S.

Neuroophthalmology. 2017 Nov 3;42(4):251-255. doi: 10.1080/01658107.2017.1394328. eCollection 2018 Aug.

14.

Isolation of Previously Uncultured Slow-Growing Bacteria by Using a Simple Modification in the Preparation of Agar Media.

Kato S, Yamagishi A, Daimon S, Kawasaki K, Tamaki H, Kitagawa W, Abe A, Tanaka M, Sone T, Asano K, Kamagata Y.

Appl Environ Microbiol. 2018 Sep 17;84(19). pii: e00807-18. doi: 10.1128/AEM.00807-18. Print 2018 Oct 1.

15.

Insight into Notch Signaling Steps That Involve pecanex from Dominant-Modifier Screens in Drosophila.

Yamakawa T, Atsumi Y, Kubo S, Yamagishi A, Morita I, Matsuno K.

Genetics. 2018 Aug;209(4):1099-1119. doi: 10.1534/genetics.118.300935. Epub 2018 May 31.

PMID:
29853475
16.

To take or not to take the shortcut: Flexible spatial behaviour of rats based on cognitive map in a lattice maze.

Sato N, Fujishita C, Yamagishi A.

Behav Processes. 2018 Jun;151:39-43. doi: 10.1016/j.beproc.2018.03.010. Epub 2018 Mar 8.

PMID:
29526812
17.

Draft Genome Sequence of the Radioresistant Bacterium Deinococcus aerius TR0125, Isolated from the High Atmosphere above Japan.

Satoh K, Arai H, Sanzen T, Kawaguchi Y, Hayashi H, Yokobori SI, Yamagishi A, Oono Y, Narumi I.

Genome Announc. 2018 Mar 1;6(9). pii: e00080-18. doi: 10.1128/genomeA.00080-18.

18.

Comprehensive reduction of amino acid set in a protein suggests the importance of prebiotic amino acids for stable proteins.

Shibue R, Sasamoto T, Shimada M, Zhang B, Yamagishi A, Akanuma S.

Sci Rep. 2018 Jan 19;8(1):1227. doi: 10.1038/s41598-018-19561-1.

19.

Proteometabolomic response of Deinococcus radiodurans exposed to UVC and vacuum conditions: Initial studies prior to the Tanpopo space mission.

Ott E, Kawaguchi Y, Kölbl D, Chaturvedi P, Nakagawa K, Yamagishi A, Weckwerth W, Milojevic T.

PLoS One. 2017 Dec 15;12(12):e0189381. doi: 10.1371/journal.pone.0189381. eCollection 2017.

20.

Creation of artificial protein-protein interactions using α-helices as interfaces.

Yagi S, Akanuma S, Yamagishi A.

Biophys Rev. 2018 Apr;10(2):411-420. doi: 10.1007/s12551-017-0352-9. Epub 2017 Dec 6. Review.

21.

Stereochemical effects on dynamics in two-component systems of gelators with perfluoroalkyl and alkyl chains as revealed by vibrational circular dichroism.

Sato H, Yajima T, Yamagishi A.

Phys Chem Chem Phys. 2018 Jan 31;20(5):3210-3215. doi: 10.1039/c7cp06264h.

PMID:
29075736
22.

Selection of a platinum-binding sequence in a loop of a four-helix bundle protein.

Yagi S, Akanuma S, Kaji A, Niiro H, Akiyama H, Uchida T, Yamagishi A.

J Biosci Bioeng. 2018 Feb;125(2):192-198. doi: 10.1016/j.jbiosc.2017.09.006. Epub 2017 Oct 17.

PMID:
29050803
23.

Solid state vibrational circular dichroism towards molecular recognition: chiral metal complexes intercalated in a clay mineral.

Sato H, Tamura K, Takimoto K, Yamagishi A.

Phys Chem Chem Phys. 2018 Jan 31;20(5):3141-3147. doi: 10.1039/c7cp05114j.

PMID:
28902193
24.

Microfluidic device coupled with a microfabricated oxygen electrode for the measurement of bactericidal activity of neutrophil-like cells.

Yamagishi A, Tanabe K, Yokokawa M, Morimoto Y, Kinoshita M, Suzuki H.

Anal Chim Acta. 2017 Sep 8;985:1-6. doi: 10.1016/j.aca.2017.07.049. Epub 2017 Jul 28.

PMID:
28864179
25.

The Position of the GFP Tag on Actin Affects the Filament Formation in Mammalian Cells.

Nagasaki A, T Kijima S, Yumoto T, Imaizumi M, Yamagishi A, Kim H, Nakamura C, Q P Uyeda T.

Cell Struct Funct. 2017;42(2):131-140. doi: 10.1247/csf.17016.

26.

Characterization of a thermostable mutant of Agaricus brasiliensis laccase created by phylogeny-based design.

Hamuro Y, Tajima K, Matsumoto-Akanuma A, Sakamoto S, Furukawa R, Yamagishi A, Ohno N, Akanuma S.

J Biosci Bioeng. 2017 Dec;124(6):623-629. doi: 10.1016/j.jbiosc.2017.07.004. Epub 2017 Aug 26.

PMID:
28847577
27.

Hydroxylation of a conserved tRNA modification establishes non-universal genetic code in echinoderm mitochondria.

Nagao A, Ohara M, Miyauchi K, Yokobori SI, Yamagishi A, Watanabe K, Suzuki T.

Nat Struct Mol Biol. 2017 Sep;24(9):778-782. doi: 10.1038/nsmb.3449. Epub 2017 Aug 7.

PMID:
28783151
28.

Renoprotective Procedures with a Cold Ischemia Time of <60 min Minimize the Deterioration of Kidney Function in Open Nephron-Sparing Surgery for Renal Cell Carcinoma.

Nishida H, Yamagishi A, Yagi M, Kanno H, Kurota Y, Sakurai T, Naito S, Shibasaki T, Kawazoe H, Ichiyanagi O, Kato T, Nagaoka A, Tomita Y, Tsuchiya N.

Urol Int. 2017;99(3):283-289. doi: 10.1159/000479037. Epub 2017 Jul 20.

PMID:
28723695
29.

Quantitative measurements of intercellular adhesion between a macrophage and cancer cells using a cup-attached AFM chip.

Kim H, Yamagishi A, Imaizumi M, Onomura Y, Nagasaki A, Miyagi Y, Okada T, Nakamura C.

Colloids Surf B Biointerfaces. 2017 Jul 1;155:366-372. doi: 10.1016/j.colsurfb.2017.04.039. Epub 2017 Apr 23.

PMID:
28454065
30.

Reconstructed ancestral enzymes suggest long-term cooling of Earth's photic zone since the Archean.

Garcia AK, Schopf JW, Yokobori SI, Akanuma S, Yamagishi A.

Proc Natl Acad Sci U S A. 2017 May 2;114(18):4619-4624. doi: 10.1073/pnas.1702729114. Epub 2017 Apr 17.

31.

Modified Marionette Technique for Laparoscopic Colorectal Surgery.

Shinji S, Kan H, Yamada T, Koizumi M, Yamagishi A, Yokoyama Y, Takahashi G, Iwai T, Hara K, Takeda K, Ohta K, Uchida E.

J Nippon Med Sch. 2017;84(1):49-53. doi: 10.1272/jnms.84.49.

32.

Archaeal and bacterial communities in deep-sea hydrogenetic ferromanganese crusts on old seamounts of the northwestern Pacific.

Nitahara S, Kato S, Usui A, Urabe T, Suzuki K, Yamagishi A.

PLoS One. 2017 Feb 24;12(2):e0173071. doi: 10.1371/journal.pone.0173071. eCollection 2017.

33.

[CEREBRAL VENOUS SINUS THROMBOSIS IN PATIENTS WITH METASTATIC TESTICULAR CANCER DURING CHEMOTHERAPY: REPORTS OF TWO CASES].

Kuboki Y, Yamagishi A, Kurokawa M, Kikuta M, Takai S, Takai Y, Ushijima M, Kurota Y, Yagi M, Sakurai T, Nishida H, Shibasaki T, Kawazoe H, Ichiyanagi O, Kato T, Nagaoka A, Tsuchiya N, Konno Y.

Nihon Hinyokika Gakkai Zasshi. 2017;108(4):225-228. doi: 10.5980/jpnjurol.108.225. Japanese.

34.

DNA aptamers against FokI nuclease domain for genome editing applications.

Nishio M, Matsumoto D, Kato Y, Abe K, Lee J, Tsukakoshi K, Yamagishi A, Nakamura C, Ikebukuro K.

Biosens Bioelectron. 2017 Jul 15;93:26-31. doi: 10.1016/j.bios.2016.11.042. Epub 2016 Nov 22.

PMID:
27899266
35.

Quest for Ancestors of Eukaryal Cells Based on Phylogenetic Analyses of Aminoacyl-tRNA Synthetases.

Furukawa R, Nakagawa M, Kuroyanagi T, Yokobori SI, Yamagishi A.

J Mol Evol. 2017 Jan;84(1):51-66. doi: 10.1007/s00239-016-9768-2. Epub 2016 Nov 26.

PMID:
27889804
36.

High efficiency penetration of antibody-immobilized nanoneedle thorough plasma membrane for in situ detection of cytoskeletal proteins in living cells.

Kawamura R, Shimizu K, Matsumoto Y, Yamagishi A, Silberberg YR, Iijima M, Kuroda S, Fukazawa K, Ishihara K, Nakamura C.

J Nanobiotechnology. 2016 Nov 3;14(1):74.

38.

Changes in Relatives' Perspectives on Quality of Death, Quality of Care, Pain Relief, and Caregiving Burden Before and After a Region-Based Palliative Care Intervention.

Maeda I, Miyashita M, Yamagishi A, Kinoshita H, Shirahige Y, Izumi N, Yamaguchi T, Igarashi M, Kato M, Morita T.

J Pain Symptom Manage. 2016 Nov;52(5):637-645. doi: 10.1016/j.jpainsymman.2016.03.022. Epub 2016 Sep 21.

PMID:
27664834
39.

Core Amino Acid Residues in the Morphology-Regulating Protein, Mms6, for Intracellular Magnetite Biomineralization.

Yamagishi A, Narumiya K, Tanaka M, Matsunaga T, Arakaki A.

Sci Rep. 2016 Oct 19;6:35670. doi: 10.1038/srep35670.

40.

The pattern of GPI-80 expression is a useful marker for unusual myeloid maturation in peripheral blood.

Takeda Y, Kato T, Ito H, Kurota Y, Yamagishi A, Sakurai T, Araki A, Nara H, Tsuchiya N, Asao H.

Clin Exp Immunol. 2016 Dec;186(3):373-386. doi: 10.1111/cei.12859. Epub 2016 Oct 4.

41.

Comparative Subcellular Localization Analysis of Magnetosome Proteins Reveals a Unique Localization Behavior of Mms6 Protein onto Magnetite Crystals.

Arakaki A, Kikuchi D, Tanaka M, Yamagishi A, Yoda T, Matsunaga T.

J Bacteriol. 2016 Sep 22;198(20):2794-802. doi: 10.1128/JB.00280-16. Print 2016 Oct 15.

42.

Chylous ascites associated with intestinal obstruction from volvulus due to Petersen's hernia: report of a case.

Akama Y, Shimizu T, Fujita I, Kanazawa Y, Kakinuma D, Kanno H, Yamagishi A, Arai H, Uchida E.

Surg Case Rep. 2016 Dec;2(1):77. doi: 10.1186/s40792-016-0207-9. Epub 2016 Jul 28.

43.

Control of magnetite nanocrystal morphology in magnetotactic bacteria by regulation of mms7 gene expression.

Yamagishi A, Tanaka M, Lenders JJ, Thiesbrummel J, Sommerdijk NA, Matsunaga T, Arakaki A.

Sci Rep. 2016 Jul 15;6:29785. doi: 10.1038/srep29785.

44.

Structural changes of layered alkylsiloxanes during the reversible melting-solidification process.

Fujii K, Hayashi S, Hashizume H, Shimomura S, Jimura K, Fujita T, Iyi N, Yamagishi A, Sato H, Ando T.

Phys Chem Chem Phys. 2016 Jul 28;18(28):19146-57. doi: 10.1039/c6cp02363k. Epub 2016 Jun 30.

PMID:
27356967
45.

Mechanoporation of living cells for delivery of macromolecules using nanoneedle array.

Matsumoto D, Yamagishi A, Saito M, Sathuluri RR, Silberberg YR, Iwata F, Kobayashi T, Nakamura C.

J Biosci Bioeng. 2016 Dec;122(6):748-752. doi: 10.1016/j.jbiosc.2016.05.006. Epub 2016 Jun 15.

PMID:
27316458
46.

Investigation of the Interplanetary Transfer of Microbes in the Tanpopo Mission at the Exposed Facility of the International Space Station.

Kawaguchi Y, Yokobori S, Hashimoto H, Yano H, Tabata M, Kawai H, Yamagishi A.

Astrobiology. 2016 May;16(5):363-76. doi: 10.1089/ast.2015.1415.

PMID:
27176813
47.

Application of Hectorite-Coated Silica Gel Particles as a Packing Material for Chromatographic Resolution.

Okada T, Kumasaki A, Shimizu K, Yamagishi A, Sato H.

J Chromatogr Sci. 2016 Aug;54(7):1238-43. doi: 10.1093/chromsci/bmw058. Epub 2016 Apr 29.

PMID:
27130880
48.

Utility of KRAS mutation detection using circulating cell-free DNA from patients with colorectal cancer.

Yamada T, Iwai T, Takahashi G, Kan H, Koizumi M, Matsuda A, Shinji S, Yamagishi A, Yokoyama Y, Tatsuguchi A, Kawagoe T, Kitano S, Nakayama M, Matsumoto S, Uchida E.

Cancer Sci. 2016 Jul;107(7):936-43. doi: 10.1111/cas.12959. Epub 2016 Jun 13.

49.

Emission behaviour of a series of bimetallic Cd(ii)-Au(i) coordination polymers.

Yamagishi A, Kawasaki T, Hiruma K, Sato H, Kitazawa T.

Dalton Trans. 2016 May 4;45(18):7823-8. doi: 10.1039/c6dt00537c.

PMID:
27063188
50.

Helical Inversion of Gel Fibrils by Elongation of Perfluoroalkyl Chains as Studied by Vibrational Circular Dichroism.

Sato H, Yajima T, Yamagishi A.

Chirality. 2016 May;28(5):361-4. doi: 10.1002/chir.22592. Epub 2016 Mar 18.

PMID:
26992437

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